Clone BS08573 Report

Search the DGRC for BS08573

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptDMAP1-RA
Protein status:BS08573.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08573.3prime Sequence

939 bp (817 high quality bases) assembled on 2006-01-10

> BS08573.3prime
ATGGTCTAGAAAGCTTTTAATTTGTGCTATTGTCCAGGGCTTCGGTCTTG
ATGGGCACCAGCGAGGGCGGTATGTTCAGTGTCTTTCCCGGGCAGGCGGC
TTCGTATTGGTGCTTCAGGCTCTCCATTTCGTAGACGCAGGTGGATAGGG
CGGTGCGAAGCTCGCAGAGCAATACCATATCGGAACGAAGCTCGTTGAAG
GAGGTGCAAATGTCCTCCGTGGGCGGCGGAGCGGGATCAACTTTAAACTC
CTGGATTGCCTGCTCGAGGGCTTTCACTTTGCGCTGGCCGATATTCGCCG
GCAGCTTCATCCTCTGCGAGCGCAGAGAAACCCCGGAACCGCGCAGGTCG
GCGAACTTGATGCCGCTGCTACCGATCTCTATGGCATTAACCACCGAGTC
CACCCTGGAGGGTCGCGGCTGCTGATGTACCTTCTTTTTGTGCAGCTTCT
TCTCGTACTTTCGCGTACTCGGCGTATTCGATGCGTGCTCATTCTGCTGA
TCCGCTTGCGAAATAAGCTTCTGCAAGTCTTGTGTCTTGCGCTCGCGTTC
CTTTTTGCGCGCCTCGATTTTCTTCATCTCGTTGATAAGCATATTCTCCT
CCTCCACCTGTTGTGTCGTGCGTTTGAACAGCTTCTCCAGCTGCTCCTTG
CGGCGCCGTTCGTGCTCGACGTCATACACAAATACTTTCTTCTCACTCGT
CTGATTCTTGGCCTTGGCGAGCAGAGCGACCACCTCATAGTAGCGTTCTT
TGAGCTCCTCCACAGTTTTGGTTCCATGCTGCTGACGGTTCCAACGATCT
GCCATCACAATGAAGCGAAGATCGAACCTTCTGGCCAGGTCGAATAGGTG
ATCGGTCTGCACCTTGCTCCAGTTGTTGATGTTGTTCCTTAAGTGGGCAT
TGTACTCCGTCATCGTGTACGAGGGCACCTCCCAGTGCT

BS08573.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11132-PA 1302 DMAP1-RA 387..1302 932..17 4580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1584 CG11132-RA 522..1437 932..17 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644777..20645368 829..238 2960 100 Minus
2R 25286936 2R 20645427..20645582 238..83 780 100 Minus
2R 25286936 2R 20644614..20644720 932..826 535 100 Minus
2R 25286936 2R 20645651..20645718 84..17 340 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:56:04 has no hits.

BS08573.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:15 Download gff for BS08573.3prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-PA 380..1302 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:57 Download gff for BS08573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11132-PA 380..1302 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:19 Download gff for BS08573.3prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 515..1444 11..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:00 Download gff for BS08573.3prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 515..1444 11..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:00 Download gff for BS08573.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20645428..20645582 83..237 100 -> Minus
2R 20645653..20645725 11..82 95   Minus
2R 20644607..20644718 828..939 98 -> Minus
2R 20644779..20645368 238..827 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:19 Download gff for BS08573.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16532112..16532223 828..939 98 -> Minus
arm_2R 16532284..16532873 238..827 100 -> Minus
arm_2R 16532933..16533087 83..237 100 -> Minus
arm_2R 16533158..16533230 11..82 95   Minus

BS08573.5prime Sequence

835 bp (800 high quality bases) assembled on 2006-01-10

> BS08573.5prime
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGAT

BS08573.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11132-PA 1302 DMAP1-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1584 CG11132-RA 135..954 16..835 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644328..20644720 117..509 1965 100 Plus
2R 25286936 2R 20644777..20645106 506..835 1650 100 Plus
2R 25286936 2R 20644170..20644272 16..118 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:59:21 has no hits.

BS08573.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:16 Download gff for BS08573.5prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:59 Download gff for BS08573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11132-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:34 Download gff for BS08573.5prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 135..954 16..835 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:34 Download gff for BS08573.5prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 135..954 16..835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:34 Download gff for BS08573.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20644170..20644271 16..117 100 -> Plus
2R 20644329..20644718 118..507 100 -> Plus
2R 20644779..20645106 508..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:34 Download gff for BS08573.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16531675..16531776 16..117 100 -> Plus
arm_2R 16531834..16532223 118..507 100 -> Plus
arm_2R 16532284..16532611 508..835 100   Plus

BS08573.complete Sequence

1334 bp (1334 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636201

> BS08573.complete
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGAATGAGCAC
GCATCGAATACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAA
GAAGGTACATCAGCAGCCGCGACCCTCCAGGGTGGACTCGGTGGTTAATG
CCATAGAGATCGGTAGCAGCGGCATCAAGTTCGCCGACCTGCGCGGTTCC
GGGGTTTCTCTGCGCTCGCAGAGGATGAAGCTGCCGGCGAATATCGGCCA
GCGCAAAGTGAAAGCCCTCGAGCAGGCAATCCAGGAGTTTAAAGTTGATC
CCGCTCCGCCGCCCACGGAGGACATTTGCACCTCCTTCAACGAGCTTCGT
TCCGATATGGTATTGCTCTGCGAGCTTCGCACCGCCCTATCCACCTGCGT
CTACGAAATGGAGAGCCTGAAGCACCAATACGAAGCCGCCTGCCCGGGAA
AGACACTGAACATACCGCCCTCGCTGGTGCCCATCAAGACCGAAGCCCTG
GACAATAGCACAAATTAAAAGCTTTCTAGACCAT

BS08573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1302 CG11132-PA 1..1302 17..1318 6510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1584 CG11132-RA 135..1437 16..1318 6515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644777..20645368 506..1097 2960 100 Plus
2R 25286936 2R 20644328..20644720 117..509 1965 100 Plus
2R 25286936 2R 20645427..20645582 1097..1252 780 100 Plus
2R 25286936 2R 20644170..20644272 16..118 515 100 Plus
2R 25286936 2R 20645651..20645718 1251..1318 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:40:55 has no hits.

BS08573.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:37 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:23 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 133..1442 16..1324 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:03 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 136..1435 17..1316 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:37 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 133..1442 16..1324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:14 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 136..1435 17..1316 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:14 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20644171..20644271 17..117 100 -> Plus
2R 20644329..20644718 118..507 100 -> Plus
2R 20644779..20645368 508..1097 100 -> Plus
2R 20645428..20645582 1098..1252 100 -> Plus
2R 20645653..20645716 1253..1316 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:03 Download gff for BS08573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16531676..16531776 17..117 100 -> Plus
arm_2R 16531834..16532223 118..507 100 -> Plus
arm_2R 16532284..16532873 508..1097 100 -> Plus
arm_2R 16532933..16533087 1098..1252 100 -> Plus
arm_2R 16533158..16533221 1253..1316 100   Plus

BS08573.pep Sequence

Translation from 16 to 1317

> BS08573.pep
MSADVRDILDMERANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVF
ALLYTDKKDAPPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPA
RNDSAVFHHWKRVTDNSTDYPFAKFNKQLEVPSYTMTEYNAHLRNNINNW
SKVQTDHLFDLARRFDLRFIVMADRWNRQQHGTKTVEELKERYYEVVALL
AKAKNQTSEKKVFVYDVEHERRRKEQLEKLFKRTTQQVEEENMLINEMKK
IEARKKERERKTQDLQKLISQADQQNEHASNTPSTRKYEKKLHKKKVHQQ
PRPSRVDSVVNAIEIGSSGIKFADLRGSGVSLRSQRMKLPANIGQRKVKA
LEQAIQEFKVDPAPPPTEDICTSFNELRSDMVLLCELRTALSTCVYEMES
LKHQYEAACPGKTLNIPPSLVPIKTEALDNSTN*

BS08573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-PA 433 CG11132-PA 1..433 1..433 2248 100 Plus