Clone Sequence Records
BS08573.3prime Sequence
939 bp (817 high quality bases) assembled on 2006-01-10
> BS08573.3prime
ATGGTCTAGAAAGCTTTTAATTTGTGCTATTGTCCAGGGCTTCGGTCTTG
ATGGGCACCAGCGAGGGCGGTATGTTCAGTGTCTTTCCCGGGCAGGCGGC
TTCGTATTGGTGCTTCAGGCTCTCCATTTCGTAGACGCAGGTGGATAGGG
CGGTGCGAAGCTCGCAGAGCAATACCATATCGGAACGAAGCTCGTTGAAG
GAGGTGCAAATGTCCTCCGTGGGCGGCGGAGCGGGATCAACTTTAAACTC
CTGGATTGCCTGCTCGAGGGCTTTCACTTTGCGCTGGCCGATATTCGCCG
GCAGCTTCATCCTCTGCGAGCGCAGAGAAACCCCGGAACCGCGCAGGTCG
GCGAACTTGATGCCGCTGCTACCGATCTCTATGGCATTAACCACCGAGTC
CACCCTGGAGGGTCGCGGCTGCTGATGTACCTTCTTTTTGTGCAGCTTCT
TCTCGTACTTTCGCGTACTCGGCGTATTCGATGCGTGCTCATTCTGCTGA
TCCGCTTGCGAAATAAGCTTCTGCAAGTCTTGTGTCTTGCGCTCGCGTTC
CTTTTTGCGCGCCTCGATTTTCTTCATCTCGTTGATAAGCATATTCTCCT
CCTCCACCTGTTGTGTCGTGCGTTTGAACAGCTTCTCCAGCTGCTCCTTG
CGGCGCCGTTCGTGCTCGACGTCATACACAAATACTTTCTTCTCACTCGT
CTGATTCTTGGCCTTGGCGAGCAGAGCGACCACCTCATAGTAGCGTTCTT
TGAGCTCCTCCACAGTTTTGGTTCCATGCTGCTGACGGTTCCAACGATCT
GCCATCACAATGAAGCGAAGATCGAACCTTCTGGCCAGGTCGAATAGGTG
ATCGGTCTGCACCTTGCTCCAGTTGTTGATGTTGTTCCTTAAGTGGGCAT
TGTACTCCGTCATCGTGTACGAGGGCACCTCCCAGTGCT
BS08573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11132-PA | 1302 | DMAP1-RA | 387..1302 | 932..17 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1584 | CG11132-RA | 522..1437 | 932..17 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20644777..20645368 | 829..238 | 2960 | 100 | Minus |
2R | 25286936 | 2R | 20645427..20645582 | 238..83 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20644614..20644720 | 932..826 | 535 | 100 | Minus |
2R | 25286936 | 2R | 20645651..20645718 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:56:04 has no hits.
BS08573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:15 Download gff for
BS08573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-PA | 380..1302 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:57 Download gff for
BS08573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11132-PA | 380..1302 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:19 Download gff for
BS08573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 515..1444 | 11..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:00 Download gff for
BS08573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 515..1444 | 11..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:00 Download gff for
BS08573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20645428..20645582 | 83..237 | 100 | -> | Minus |
2R | 20645653..20645725 | 11..82 | 95 | | Minus |
2R | 20644607..20644718 | 828..939 | 98 | -> | Minus |
2R | 20644779..20645368 | 238..827 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:19 Download gff for
BS08573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16532112..16532223 | 828..939 | 98 | -> | Minus |
arm_2R | 16532284..16532873 | 238..827 | 100 | -> | Minus |
arm_2R | 16532933..16533087 | 83..237 | 100 | -> | Minus |
arm_2R | 16533158..16533230 | 11..82 | 95 | | Minus |
BS08573.5prime Sequence
835 bp (800 high quality bases) assembled on 2006-01-10
> BS08573.5prime
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGAT
BS08573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11132-PA | 1302 | DMAP1-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1584 | CG11132-RA | 135..954 | 16..835 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20644328..20644720 | 117..509 | 1965 | 100 | Plus |
2R | 25286936 | 2R | 20644777..20645106 | 506..835 | 1650 | 100 | Plus |
2R | 25286936 | 2R | 20644170..20644272 | 16..118 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:59:21 has no hits.
BS08573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:16 Download gff for
BS08573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:59 Download gff for
BS08573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11132-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:34 Download gff for
BS08573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 135..954 | 16..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:34 Download gff for
BS08573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 135..954 | 16..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:34 Download gff for
BS08573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20644170..20644271 | 16..117 | 100 | -> | Plus |
2R | 20644329..20644718 | 118..507 | 100 | -> | Plus |
2R | 20644779..20645106 | 508..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:34 Download gff for
BS08573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16531675..16531776 | 16..117 | 100 | -> | Plus |
arm_2R | 16531834..16532223 | 118..507 | 100 | -> | Plus |
arm_2R | 16532284..16532611 | 508..835 | 100 | | Plus |
BS08573.complete Sequence
1334 bp (1334 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636201
> BS08573.complete
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGAATGAGCAC
GCATCGAATACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAA
GAAGGTACATCAGCAGCCGCGACCCTCCAGGGTGGACTCGGTGGTTAATG
CCATAGAGATCGGTAGCAGCGGCATCAAGTTCGCCGACCTGCGCGGTTCC
GGGGTTTCTCTGCGCTCGCAGAGGATGAAGCTGCCGGCGAATATCGGCCA
GCGCAAAGTGAAAGCCCTCGAGCAGGCAATCCAGGAGTTTAAAGTTGATC
CCGCTCCGCCGCCCACGGAGGACATTTGCACCTCCTTCAACGAGCTTCGT
TCCGATATGGTATTGCTCTGCGAGCTTCGCACCGCCCTATCCACCTGCGT
CTACGAAATGGAGAGCCTGAAGCACCAATACGAAGCCGCCTGCCCGGGAA
AGACACTGAACATACCGCCCTCGCTGGTGCCCATCAAGACCGAAGCCCTG
GACAATAGCACAAATTAAAAGCTTTCTAGACCAT
BS08573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1302 | CG11132-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1584 | CG11132-RA | 135..1437 | 16..1318 | 6515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20644777..20645368 | 506..1097 | 2960 | 100 | Plus |
2R | 25286936 | 2R | 20644328..20644720 | 117..509 | 1965 | 100 | Plus |
2R | 25286936 | 2R | 20645427..20645582 | 1097..1252 | 780 | 100 | Plus |
2R | 25286936 | 2R | 20644170..20644272 | 16..118 | 515 | 100 | Plus |
2R | 25286936 | 2R | 20645651..20645718 | 1251..1318 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:40:55 has no hits.
BS08573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:37 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 1..1302 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:23 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 133..1442 | 16..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:03 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 136..1435 | 17..1316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:37 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 133..1442 | 16..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:14 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 136..1435 | 17..1316 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:14 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20644171..20644271 | 17..117 | 100 | -> | Plus |
2R | 20644329..20644718 | 118..507 | 100 | -> | Plus |
2R | 20644779..20645368 | 508..1097 | 100 | -> | Plus |
2R | 20645428..20645582 | 1098..1252 | 100 | -> | Plus |
2R | 20645653..20645716 | 1253..1316 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:03 Download gff for
BS08573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16531676..16531776 | 17..117 | 100 | -> | Plus |
arm_2R | 16531834..16532223 | 118..507 | 100 | -> | Plus |
arm_2R | 16532284..16532873 | 508..1097 | 100 | -> | Plus |
arm_2R | 16532933..16533087 | 1098..1252 | 100 | -> | Plus |
arm_2R | 16533158..16533221 | 1253..1316 | 100 | | Plus |
BS08573.pep Sequence
Translation from 16 to 1317
> BS08573.pep
MSADVRDILDMERANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVF
ALLYTDKKDAPPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPA
RNDSAVFHHWKRVTDNSTDYPFAKFNKQLEVPSYTMTEYNAHLRNNINNW
SKVQTDHLFDLARRFDLRFIVMADRWNRQQHGTKTVEELKERYYEVVALL
AKAKNQTSEKKVFVYDVEHERRRKEQLEKLFKRTTQQVEEENMLINEMKK
IEARKKERERKTQDLQKLISQADQQNEHASNTPSTRKYEKKLHKKKVHQQ
PRPSRVDSVVNAIEIGSSGIKFADLRGSGVSLRSQRMKLPANIGQRKVKA
LEQAIQEFKVDPAPPPTEDICTSFNELRSDMVLLCELRTALSTCVYEMES
LKHQYEAACPGKTLNIPPSLVPIKTEALDNSTN*
BS08573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-PA | 433 | CG11132-PA | 1..433 | 1..433 | 2248 | 100 | Plus |