Clone BS08575 Report

Search the DGRC for BS08575

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptcbs-RA
Protein status:BS08575.pep: full length peptide match
Sequenced Size:1868

Clone Sequence Records

BS08575.3prime Sequence

936 bp (782 high quality bases) assembled on 2006-01-10

> BS08575.3prime
ATGGTCTAGAAAGCTTTTAAGTTGGTTTCATGCCAAACCAACTCATCTTC
CAATTCAATGTGTCGTGTAGCAGCTTTTCCTCCTCGGTTGTCAATTGAAG
TAATGTGGATACGGCACGAACAAGATGGCGAGCTTCCACCTCGCGACTGG
TCAAGAACTTAACAATTACGTGTTTCAAATATTGAAAATTAACTTCGTCC
ATTATGACGCAATTTCCCTTGTCGCCAGTTGAAAATGCCTCCAGCGATGA
ACTTGAGATTCTGTGACCTGGTGTCGTTGTCGGATGAGATTCACTGTCCG
TGGATATCTGCGCACTGCGTAGTTCCTTCTGCACTGTTTTTTTCAAGTCA
ATCAAACGCTGATTCAGTGTTTTTATTGTCTTATTCTTTTCGATTATTTC
CAACTGAACTCGCTCGAATTCGGTCAACTTGTCGGCATTATCCTGTGCTG
TGCTGCTGACCTGCTGCAACGTTTGCCGTGCCTCGGATATATCCCTCACC
AGCTGATTATTCCTCTCCTGGAGGTCGCTGGCTTCGCTGCGCTCCAAGCG
CAGCTGTTGCCGTAAAATGTCTTCGCTCTGGGCGATTTCCGCATTGCGAA
GTATTGCAGTCATTTTCTCCTCTCGTTCGATTTCCAGTTGCATTATGGTT
TCGTCCAGCTGCTCCTGCTTTTCAGTCACCTGAACCCGTAGCTTTTGGGC
CACCTGCTCGGCATTCGAGGAGTACTCGCTGAACCTGTCATCCGCTGCCG
TGAGACGAGTCTTGAGATCTTTTACCTCTGTTTCCAAATTTTGAGATTTA
TTGCGCTCAAAGAGGACTTGCTGCTCGTTCTCCTCTCGGCACTCTTTCAG
GGGCACACTAAGTTCATCGATTTCCTCCTCCAGCAGCTTGACCTTATCGT
CCCGCTGCTTTATTTCATCTTTGGCTTTTTCGAGTT

BS08575.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4840-PA 1836 CG4840-RA 917..1836 936..17 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
cbs-RA 2257 CG4840-RA 1156..2075 936..17 4585 99.9 Minus
cbs-RB 2233 CG4840-RB 1156..2051 936..17 4215 97.3 Minus
cbs-RC 2227 CG4840-RC 1156..1924 936..168 3830 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13452322..13452735 793..380 2070 100 Minus
2R 25286936 2R 13452789..13453032 381..138 1220 100 Minus
2R 25286936 2R 13453087..13453211 141..17 625 100 Minus
2R 25286936 2R 13451926..13452026 894..794 490 99 Minus
2R 25286936 2R 13451832..13451877 936..891 230 100 Minus
Blast to na_te.dros performed on 2015-02-03 09:30:19 has no hits.

BS08575.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:19 Download gff for BS08575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4840-PA 917..1836 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:03 Download gff for BS08575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4840-PA 917..1836 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:03 Download gff for BS08575.3prime
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 1156..2080 13..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:01:01 Download gff for BS08575.3prime
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 1156..2080 13..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:01:01 Download gff for BS08575.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13451832..13451875 893..936 100 -> Minus
2R 13451928..13452026 794..892 98 -> Minus
2R 13452322..13452735 380..793 100 -> Minus
2R 13452791..13453030 140..379 100 -> Minus
2R 13453089..13453216 13..139 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:03 Download gff for BS08575.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9339433..9339531 794..892 98 -> Minus
arm_2R 9339337..9339380 893..936 100 -> Minus
arm_2R 9339827..9340240 380..793 100 -> Minus
arm_2R 9340296..9340535 140..379 100 -> Minus
arm_2R 9340594..9340721 13..139 98   Minus

BS08575.5prime Sequence

901 bp (758 high quality bases) assembled on 2006-01-10

> BS08575.5prime
GAAGTTATCAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGG
AAACTGGCGATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAAC
AACAACAACAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAA
CTCAGCTGATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAAT
TGTGCGAGCTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACC
GTCACGCAGGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAA
GACCAACGAGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGG
ACATATACTGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAG
ATTGACAAGCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGA
TCGCATGGGTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCG
AGGAACTAGAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGC
GACGAACTAGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCT
GACCACAACACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGC
GCATGAAAATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAAC
TCCGAGCAACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACA
GCACTTAGAGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGA
GTGGCCAGAATCTGGCGCTGGGAACCCAAGTTAGTCGTCTATCCAAGCAA
GTGGCCGAAGAGACCACCGAAAAGCGAAAGGCCCTTAAATCCCGCGACGA
T

BS08575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4840-PA 1836 CG4840-RA 1..885 17..901 4400 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
cbs-RC 2227 CG4840-RC 240..1124 17..901 4410 99.9 Plus
cbs-RB 2233 CG4840-RB 240..1124 17..901 4410 99.9 Plus
cbs-RA 2257 CG4840-RA 240..1124 17..901 4410 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13451088..13451800 189..901 3550 99.9 Plus
2R 25286936 2R 13450825..13450998 17..190 870 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:02:31 has no hits.

BS08575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:20 Download gff for BS08575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4840-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:05 Download gff for BS08575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4840-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:47 Download gff for BS08575.5prime
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 240..1124 17..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:02 Download gff for BS08575.5prime
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 240..1124 17..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:02 Download gff for BS08575.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13450825..13450998 17..190 100 -> Plus
2R 13451090..13451800 191..901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:47 Download gff for BS08575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9338330..9338503 17..190 100 -> Plus
arm_2R 9338595..9339305 191..901 99   Plus

BS08575.complete Sequence

1868 bp assembled on 2009-08-24

GenBank Submission: KX806431

> BS08575.complete
GAAGTTATCAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGG
AAACTGGCGATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAAC
AACAACAACAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAA
CTCAGCTGATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAAT
TGTGCGAGCTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACC
GTCACGCAGGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAA
GACCAACGAGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGG
ACATATACTGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAG
ATTGACAAGCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGA
TCGCATGGGTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCG
AGGAACTAGAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGC
GACGAACTAGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCT
GACCACAACACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGC
GCATGAAAATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAAC
TCCGAGCAACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACA
GCACTTAGAGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGA
GTGGCCAGAATCTGGCGCTGGAAACCCAAGTTAGTCGTCTATCCAAGCAA
GTGGCCGAAGAGACCACCGAAAAGCGAAAGGCCCTTAAATCCCGCGACGA
TGCCATTGAAAGCCGCAAGCAGGTATCATTCGAACTCGAAAAAGCCAAAG
ATGAAATAAAGCAGCGGGACGATAAGGTCAAGCTGCTGGAGGAGGAAATC
GATGAACTTAGTGTGGCCCTGAAAGAGTGCCGAGAGGAGAACGAGCAGCA
AGTCCTCTTTGAGCGCAATAAATCTCAAAATTTGGAAACAGAGGTAAAAG
ATCTCAAGACTCGTCTCACGGCAGCGGATGACAGGTTCAGCGAGTACTCC
TCGAATGCCGAGCAGGTGGCCCAAAAGCTACGGGTTCAGGTGACTGAAAA
GCAGGAGCAGCTGGACGAAACCATAATGCAACTGGAAATCGAACGAGAGG
AGAAAATGACTGCAATACTTCGCAATGCGGAAATCGCCCAGAGCGAAGAC
ATTTTACGGCAACAGCTGCGCTTGGAGCGCAGCGAAGCCAGCGACCTCCA
GGAGAGGAATAATCAGCTGGTGAGGGATATATCCGAGGCACGGCAAACGT
TGCAGCAGGTCAGCAGCACAGCACAGGATAATGCCGACAAGTTGACCGAA
TTCGAGCGAGTTCAGTTGGAAATAATCGAAAAGAATAAGACAATAAAAAC
ACTGAATCAGCGTTTGATTGACTTGAAAAAAACAGTGCAGAAGGAACTAC
GCAGTGCGCAGATATCCACGGACAGTGAATCTCATCCGACAACGACACCA
GGTCACAGAATCTCAAGTTCATCGCTGGAGGCATTTTCAACTGGCGACAA
GGGAAATTGCGTCATAATGGACGAAGTTAATTTTCAATATTTGAAACACG
TAATTGTTAAGTTCTTGACCAGTCGCGAGGTGGAAGCTCGCCATCTTGTT
CGTGCCGTATCCACATTACTTCAATTGACAACCGAGGAGGAAAAGCTGCT
ACACGACACATTGAATTGGAAGATGAGTTGGTTTGGCATGAAACCAACTT
AAAAGCTTTCTAGACCAT

BS08575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
cbs-RA 1836 CG4840-PA 1..1836 17..1852 9180 100 Plus
cbs-RB 1812 CG4840-PB 1..1691 17..1707 8455 100 Plus
cbs-RC 1806 CG4840-PC 1..1685 17..1701 8425 100 Plus
cbs-RB 1812 CG4840-PB 1690..1812 1730..1852 615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
cbs-RA 2257 CG4840-RA 240..2075 17..1852 9180 100 Plus
cbs-RB 2233 CG4840-RB 240..1930 17..1707 8455 100 Plus
cbs-RC 2227 CG4840-RC 240..1924 17..1701 8425 100 Plus
cbs-RB 2233 CG4840-RB 1929..2051 1730..1852 615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13451088..13451877 189..978 3950 100 Plus
2R 25286936 2R 13452322..13452735 1076..1489 2070 100 Plus
2R 25286936 2R 13452789..13453032 1488..1731 1220 100 Plus
2R 25286936 2R 13450825..13450998 17..190 870 100 Plus
2R 25286936 2R 13453087..13453211 1728..1852 625 100 Plus
2R 25286936 2R 13451926..13452026 975..1075 505 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:33:10 has no hits.

BS08575.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:00 Download gff for BS08575.complete
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 168..1995 23..1850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:53 Download gff for BS08575.complete
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 246..2073 23..1850 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:17 Download gff for BS08575.complete
Subject Subject Range Query Range Percent Splice Strand
cbs-RA 246..2073 23..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:17 Download gff for BS08575.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13453089..13453209 1730..1850 100   Plus
2R 13450831..13450998 23..190 100 -> Plus
2R 13451090..13451875 191..976 100 -> Plus
2R 13451928..13452026 977..1075 100 -> Plus
2R 13452322..13452735 1076..1489 100 -> Plus
2R 13452791..13453030 1490..1729 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:53 Download gff for BS08575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9340594..9340714 1730..1850 100   Plus
arm_2R 9338336..9338503 23..190 100 -> Plus
arm_2R 9338595..9339380 191..976 100 -> Plus
arm_2R 9339433..9339531 977..1075 100 -> Plus
arm_2R 9339827..9340240 1076..1489 100 -> Plus
arm_2R 9340296..9340535 1490..1729 100 -> Plus

BS08575.pep Sequence

Translation from 16 to 1851

> BS08575.pep
MFATLKNKIKEETGDDVVQSANQRYPGNNNNNYRLRSRRVSINSNSADDV
GGGGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQEEKTRVDKTNEIL
LESVRVAQTQKDIYCEEQEKIQNLQQIEIDKLKNLLSFREQESVDRMGLM
RQQTQQIESLSEELERLRPIESVAEDLRDELEQLRHSTQQEKNLLTTTLA
AVQEENRHLKKRMKIVEESRLESLGKLNSEQQVQALIREHKLLEQHLEEA
HLQLSDIKGSWSGQNLALETQVSRLSKQVAEETTEKRKALKSRDDAIESR
KQVSFELEKAKDEIKQRDDKVKLLEEEIDELSVALKECREENEQQVLFER
NKSQNLETEVKDLKTRLTAADDRFSEYSSNAEQVAQKLRVQVTEKQEQLD
ETIMQLEIEREEKMTAILRNAEIAQSEDILRQQLRLERSEASDLQERNNQ
LVRDISEARQTLQQVSSTAQDNADKLTEFERVQLEIIEKNKTIKTLNQRL
IDLKKTVQKELRSAQISTDSESHPTTTPGHRISSSSLEAFSTGDKGNCVI
MDEVNFQYLKHVIVKFLTSREVEARHLVRAVSTLLQLTTEEEKLLHDTLN
WKMSWFGMKPT*

BS08575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
cbs-PA 611 CG4840-PA 1..611 1..611 3018 100 Plus
cbs-PB 603 CG4840-PB 1..603 1..611 2961 98.7 Plus
cbs-PC 601 CG4840-PC 1..601 1..611 2951 98.4 Plus
Rootletin-PF 2048 CG6129-PF 810..1304 53..511 225 21.2 Plus
Rootletin-PE 2048 CG6129-PE 810..1304 53..511 225 21.2 Plus
Rootletin-PF 2048 CG6129-PF 599..1013 55..478 178 19.7 Plus