Clone Sequence Records
BS08575.3prime Sequence
936 bp (782 high quality bases) assembled on 2006-01-10
> BS08575.3prime
ATGGTCTAGAAAGCTTTTAAGTTGGTTTCATGCCAAACCAACTCATCTTC
CAATTCAATGTGTCGTGTAGCAGCTTTTCCTCCTCGGTTGTCAATTGAAG
TAATGTGGATACGGCACGAACAAGATGGCGAGCTTCCACCTCGCGACTGG
TCAAGAACTTAACAATTACGTGTTTCAAATATTGAAAATTAACTTCGTCC
ATTATGACGCAATTTCCCTTGTCGCCAGTTGAAAATGCCTCCAGCGATGA
ACTTGAGATTCTGTGACCTGGTGTCGTTGTCGGATGAGATTCACTGTCCG
TGGATATCTGCGCACTGCGTAGTTCCTTCTGCACTGTTTTTTTCAAGTCA
ATCAAACGCTGATTCAGTGTTTTTATTGTCTTATTCTTTTCGATTATTTC
CAACTGAACTCGCTCGAATTCGGTCAACTTGTCGGCATTATCCTGTGCTG
TGCTGCTGACCTGCTGCAACGTTTGCCGTGCCTCGGATATATCCCTCACC
AGCTGATTATTCCTCTCCTGGAGGTCGCTGGCTTCGCTGCGCTCCAAGCG
CAGCTGTTGCCGTAAAATGTCTTCGCTCTGGGCGATTTCCGCATTGCGAA
GTATTGCAGTCATTTTCTCCTCTCGTTCGATTTCCAGTTGCATTATGGTT
TCGTCCAGCTGCTCCTGCTTTTCAGTCACCTGAACCCGTAGCTTTTGGGC
CACCTGCTCGGCATTCGAGGAGTACTCGCTGAACCTGTCATCCGCTGCCG
TGAGACGAGTCTTGAGATCTTTTACCTCTGTTTCCAAATTTTGAGATTTA
TTGCGCTCAAAGAGGACTTGCTGCTCGTTCTCCTCTCGGCACTCTTTCAG
GGGCACACTAAGTTCATCGATTTCCTCCTCCAGCAGCTTGACCTTATCGT
CCCGCTGCTTTATTTCATCTTTGGCTTTTTCGAGTT
BS08575.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4840-PA | 1836 | CG4840-RA | 917..1836 | 936..17 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbs-RA | 2257 | CG4840-RA | 1156..2075 | 936..17 | 4585 | 99.9 | Minus |
cbs-RB | 2233 | CG4840-RB | 1156..2051 | 936..17 | 4215 | 97.3 | Minus |
cbs-RC | 2227 | CG4840-RC | 1156..1924 | 936..168 | 3830 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13452322..13452735 | 793..380 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 13452789..13453032 | 381..138 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 13453087..13453211 | 141..17 | 625 | 100 | Minus |
2R | 25286936 | 2R | 13451926..13452026 | 894..794 | 490 | 99 | Minus |
2R | 25286936 | 2R | 13451832..13451877 | 936..891 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:30:19 has no hits.
BS08575.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:19 Download gff for
BS08575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4840-PA | 917..1836 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:03 Download gff for
BS08575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4840-PA | 917..1836 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:03 Download gff for
BS08575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 1156..2080 | 13..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:01:01 Download gff for
BS08575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 1156..2080 | 13..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:01:01 Download gff for
BS08575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13451832..13451875 | 893..936 | 100 | -> | Minus |
2R | 13451928..13452026 | 794..892 | 98 | -> | Minus |
2R | 13452322..13452735 | 380..793 | 100 | -> | Minus |
2R | 13452791..13453030 | 140..379 | 100 | -> | Minus |
2R | 13453089..13453216 | 13..139 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:03 Download gff for
BS08575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9339433..9339531 | 794..892 | 98 | -> | Minus |
arm_2R | 9339337..9339380 | 893..936 | 100 | -> | Minus |
arm_2R | 9339827..9340240 | 380..793 | 100 | -> | Minus |
arm_2R | 9340296..9340535 | 140..379 | 100 | -> | Minus |
arm_2R | 9340594..9340721 | 13..139 | 98 | | Minus |
BS08575.5prime Sequence
901 bp (758 high quality bases) assembled on 2006-01-10
> BS08575.5prime
GAAGTTATCAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGG
AAACTGGCGATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAAC
AACAACAACAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAA
CTCAGCTGATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAAT
TGTGCGAGCTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACC
GTCACGCAGGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAA
GACCAACGAGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGG
ACATATACTGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAG
ATTGACAAGCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGA
TCGCATGGGTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCG
AGGAACTAGAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGC
GACGAACTAGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCT
GACCACAACACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGC
GCATGAAAATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAAC
TCCGAGCAACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACA
GCACTTAGAGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGA
GTGGCCAGAATCTGGCGCTGGGAACCCAAGTTAGTCGTCTATCCAAGCAA
GTGGCCGAAGAGACCACCGAAAAGCGAAAGGCCCTTAAATCCCGCGACGA
T
BS08575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4840-PA | 1836 | CG4840-RA | 1..885 | 17..901 | 4400 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbs-RC | 2227 | CG4840-RC | 240..1124 | 17..901 | 4410 | 99.9 | Plus |
cbs-RB | 2233 | CG4840-RB | 240..1124 | 17..901 | 4410 | 99.9 | Plus |
cbs-RA | 2257 | CG4840-RA | 240..1124 | 17..901 | 4410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13451088..13451800 | 189..901 | 3550 | 99.9 | Plus |
2R | 25286936 | 2R | 13450825..13450998 | 17..190 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:02:31 has no hits.
BS08575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:20 Download gff for
BS08575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4840-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:05 Download gff for
BS08575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4840-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:47 Download gff for
BS08575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 240..1124 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:02 Download gff for
BS08575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 240..1124 | 17..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:02 Download gff for
BS08575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13450825..13450998 | 17..190 | 100 | -> | Plus |
2R | 13451090..13451800 | 191..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:47 Download gff for
BS08575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9338330..9338503 | 17..190 | 100 | -> | Plus |
arm_2R | 9338595..9339305 | 191..901 | 99 | | Plus |
BS08575.complete Sequence
1868 bp assembled on 2009-08-24
GenBank Submission: KX806431
> BS08575.complete
GAAGTTATCAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGG
AAACTGGCGATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAAC
AACAACAACAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAA
CTCAGCTGATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAAT
TGTGCGAGCTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACC
GTCACGCAGGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAA
GACCAACGAGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGG
ACATATACTGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAG
ATTGACAAGCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGA
TCGCATGGGTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCG
AGGAACTAGAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGC
GACGAACTAGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCT
GACCACAACACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGC
GCATGAAAATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAAC
TCCGAGCAACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACA
GCACTTAGAGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGA
GTGGCCAGAATCTGGCGCTGGAAACCCAAGTTAGTCGTCTATCCAAGCAA
GTGGCCGAAGAGACCACCGAAAAGCGAAAGGCCCTTAAATCCCGCGACGA
TGCCATTGAAAGCCGCAAGCAGGTATCATTCGAACTCGAAAAAGCCAAAG
ATGAAATAAAGCAGCGGGACGATAAGGTCAAGCTGCTGGAGGAGGAAATC
GATGAACTTAGTGTGGCCCTGAAAGAGTGCCGAGAGGAGAACGAGCAGCA
AGTCCTCTTTGAGCGCAATAAATCTCAAAATTTGGAAACAGAGGTAAAAG
ATCTCAAGACTCGTCTCACGGCAGCGGATGACAGGTTCAGCGAGTACTCC
TCGAATGCCGAGCAGGTGGCCCAAAAGCTACGGGTTCAGGTGACTGAAAA
GCAGGAGCAGCTGGACGAAACCATAATGCAACTGGAAATCGAACGAGAGG
AGAAAATGACTGCAATACTTCGCAATGCGGAAATCGCCCAGAGCGAAGAC
ATTTTACGGCAACAGCTGCGCTTGGAGCGCAGCGAAGCCAGCGACCTCCA
GGAGAGGAATAATCAGCTGGTGAGGGATATATCCGAGGCACGGCAAACGT
TGCAGCAGGTCAGCAGCACAGCACAGGATAATGCCGACAAGTTGACCGAA
TTCGAGCGAGTTCAGTTGGAAATAATCGAAAAGAATAAGACAATAAAAAC
ACTGAATCAGCGTTTGATTGACTTGAAAAAAACAGTGCAGAAGGAACTAC
GCAGTGCGCAGATATCCACGGACAGTGAATCTCATCCGACAACGACACCA
GGTCACAGAATCTCAAGTTCATCGCTGGAGGCATTTTCAACTGGCGACAA
GGGAAATTGCGTCATAATGGACGAAGTTAATTTTCAATATTTGAAACACG
TAATTGTTAAGTTCTTGACCAGTCGCGAGGTGGAAGCTCGCCATCTTGTT
CGTGCCGTATCCACATTACTTCAATTGACAACCGAGGAGGAAAAGCTGCT
ACACGACACATTGAATTGGAAGATGAGTTGGTTTGGCATGAAACCAACTT
AAAAGCTTTCTAGACCAT
BS08575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbs-RA | 1836 | CG4840-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
cbs-RB | 1812 | CG4840-PB | 1..1691 | 17..1707 | 8455 | 100 | Plus |
cbs-RC | 1806 | CG4840-PC | 1..1685 | 17..1701 | 8425 | 100 | Plus |
cbs-RB | 1812 | CG4840-PB | 1690..1812 | 1730..1852 | 615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbs-RA | 2257 | CG4840-RA | 240..2075 | 17..1852 | 9180 | 100 | Plus |
cbs-RB | 2233 | CG4840-RB | 240..1930 | 17..1707 | 8455 | 100 | Plus |
cbs-RC | 2227 | CG4840-RC | 240..1924 | 17..1701 | 8425 | 100 | Plus |
cbs-RB | 2233 | CG4840-RB | 1929..2051 | 1730..1852 | 615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13451088..13451877 | 189..978 | 3950 | 100 | Plus |
2R | 25286936 | 2R | 13452322..13452735 | 1076..1489 | 2070 | 100 | Plus |
2R | 25286936 | 2R | 13452789..13453032 | 1488..1731 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 13450825..13450998 | 17..190 | 870 | 100 | Plus |
2R | 25286936 | 2R | 13453087..13453211 | 1728..1852 | 625 | 100 | Plus |
2R | 25286936 | 2R | 13451926..13452026 | 975..1075 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:33:10 has no hits.
BS08575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:00 Download gff for
BS08575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 168..1995 | 23..1850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:53 Download gff for
BS08575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 246..2073 | 23..1850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:17 Download gff for
BS08575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbs-RA | 246..2073 | 23..1850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:17 Download gff for
BS08575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13453089..13453209 | 1730..1850 | 100 | | Plus |
2R | 13450831..13450998 | 23..190 | 100 | -> | Plus |
2R | 13451090..13451875 | 191..976 | 100 | -> | Plus |
2R | 13451928..13452026 | 977..1075 | 100 | -> | Plus |
2R | 13452322..13452735 | 1076..1489 | 100 | -> | Plus |
2R | 13452791..13453030 | 1490..1729 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:53 Download gff for
BS08575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9340594..9340714 | 1730..1850 | 100 | | Plus |
arm_2R | 9338336..9338503 | 23..190 | 100 | -> | Plus |
arm_2R | 9338595..9339380 | 191..976 | 100 | -> | Plus |
arm_2R | 9339433..9339531 | 977..1075 | 100 | -> | Plus |
arm_2R | 9339827..9340240 | 1076..1489 | 100 | -> | Plus |
arm_2R | 9340296..9340535 | 1490..1729 | 100 | -> | Plus |
BS08575.pep Sequence
Translation from 16 to 1851
> BS08575.pep
MFATLKNKIKEETGDDVVQSANQRYPGNNNNNYRLRSRRVSINSNSADDV
GGGGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQEEKTRVDKTNEIL
LESVRVAQTQKDIYCEEQEKIQNLQQIEIDKLKNLLSFREQESVDRMGLM
RQQTQQIESLSEELERLRPIESVAEDLRDELEQLRHSTQQEKNLLTTTLA
AVQEENRHLKKRMKIVEESRLESLGKLNSEQQVQALIREHKLLEQHLEEA
HLQLSDIKGSWSGQNLALETQVSRLSKQVAEETTEKRKALKSRDDAIESR
KQVSFELEKAKDEIKQRDDKVKLLEEEIDELSVALKECREENEQQVLFER
NKSQNLETEVKDLKTRLTAADDRFSEYSSNAEQVAQKLRVQVTEKQEQLD
ETIMQLEIEREEKMTAILRNAEIAQSEDILRQQLRLERSEASDLQERNNQ
LVRDISEARQTLQQVSSTAQDNADKLTEFERVQLEIIEKNKTIKTLNQRL
IDLKKTVQKELRSAQISTDSESHPTTTPGHRISSSSLEAFSTGDKGNCVI
MDEVNFQYLKHVIVKFLTSREVEARHLVRAVSTLLQLTTEEEKLLHDTLN
WKMSWFGMKPT*
BS08575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbs-PA | 611 | CG4840-PA | 1..611 | 1..611 | 3018 | 100 | Plus |
cbs-PB | 603 | CG4840-PB | 1..603 | 1..611 | 2961 | 98.7 | Plus |
cbs-PC | 601 | CG4840-PC | 1..601 | 1..611 | 2951 | 98.4 | Plus |
Rootletin-PF | 2048 | CG6129-PF | 810..1304 | 53..511 | 225 | 21.2 | Plus |
Rootletin-PE | 2048 | CG6129-PE | 810..1304 | 53..511 | 225 | 21.2 | Plus |
Rootletin-PF | 2048 | CG6129-PF | 599..1013 | 55..478 | 178 | 19.7 | Plus |