Clone Sequence Records
BS08576.3prime Sequence
899 bp (830 high quality bases) assembled on 2006-01-10
> BS08576.3prime
ATGGTCTAGAAAGCTTTTATTGAAGTGCACTGAAAAAATCAATTTGTAAG
GTTTGTTTATCCTTCGTCTGTGAAACTTTTCCTTGCTGCAGCAGTTTTCC
GTACTCCTGTTTGAAGTCCGAGCGAATATATAAGTGTTTGCCCCTTTTTA
GTTTTGGTTGACCCGCTTTTGGCAGCGGTATTGTCGGATTGAAAGCCATC
TGAGTGCTGTCGAATTGCGTAAACAGCTCGTGGGAGGTAAGTTTGCCAAT
TTCCGTGGGCAAAGCTCCCTCGCCCGTTGCTGGCACTCCATGAGCAATGT
GAACGGCCATCCGTCGCACCGTGGGATGATAGTGACGTGCCAGAAGCGCA
AGCTCATACAGCGCTGTGCTTGCTGCGTTACAGTACTCAGGATCGTCCAG
TTCGGGATCGTAACGACCAGAGCCTATCGTAGTGTCTGTATCCAATAGGT
TGTCAAGCACAGAAGTGAGCTGGAAGGTTTGTTTTATTGTGCCAAGCGTG
GCCAGGGTGCCATTATGGAGCAGATGCAGACTTCCAGTAAGCAAGCGTTT
CATGAAGGCCATTAGACGCTGCTGGCTCATATTGCGACGACGCTTTACGA
GCACCTCATCCAAAGTTCGCAAAATAATGGCGAAGTCATCGTGATTTTTG
CCTGCCTGCACCGCCAGCATATTTCGGTAAAAGTGCTGGTAGAATCGGAT
GGGGTCGATGTTTAGCACCTCACCCTGGCCGGAAAGGATAACGAATATGG
TCTGAACACAGTGCAATCGCTCCCGGTAGCCCAGCTCGTCTTGGTCCTCT
AGAATGCGGTTGAGCACATCGATTAGATCGGAGAAGAAGTCCAAATTAAT
GACGTGCGCAAACTCTGCCAATCCTTCTAGAATAGCGCTCAGCACGCGG
BS08576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-PA | 2469 | CG1234-RA | 1587..2469 | 899..17 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-RA | 2572 | CG1234-RA | 1673..2556 | 899..16 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7244528..7245151 | 240..863 | 3120 | 100 | Plus |
| 3R | 32079331 | 3R | 7244248..7244471 | 16..239 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 7245208..7245245 | 862..899 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:48:05 has no hits.
BS08576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:21 Download gff for
BS08576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-PA | 1587..2469 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:07 Download gff for
BS08576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-PA | 1587..2469 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:37:34 Download gff for
BS08576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 1673..2556 | 16..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:28 Download gff for
BS08576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 1673..2556 | 16..899 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:28 Download gff for
BS08576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7244248..7244471 | 16..239 | 100 | <- | Plus |
| 3R | 7244528..7245151 | 240..863 | 100 | <- | Plus |
| 3R | 7245210..7245245 | 864..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:37:34 Download gff for
BS08576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3069970..3070193 | 16..239 | 100 | <- | Plus |
| arm_3R | 3070250..3070873 | 240..863 | 100 | <- | Plus |
| arm_3R | 3070932..3070967 | 864..899 | 100 | | Plus |
BS08576.5prime Sequence
964 bp (763 high quality bases) assembled on 2006-01-10
> BS08576.5prime
GAAGTTATCAGTCGACATGGGAACTAAAAAGGTCAAAATCAGCTCGGTCA
AGCGGGCTGCTCACCTGAAGTCGAAAAAAACACCGCTTTCTAAGCAGCAG
CAACAAAAACAGAAGCAAAAGCGCGACCAACTGAAATCGAAGCGCGAACA
GGGTCAGAATATATTCTCCCAAAAGGCGAGAAAGCGGGACAACTTAGCAC
AGCGTAAAAAGCACAACAAATTGGCCTCCCTGGGCTTGGATCCGCTCGAG
GAAGACAACGAGGATGGCGACGATGAGATGCTTGAAAACGTTGCGGACAT
GCTGGATGGCGATGATCTTGCCCTGCTCCAGGCTAACAAACGCAAGCGAA
AGGCCAAGACGACCGGCGAGAATGATCCTGACCAAGGACAATCCATCGGC
TTGGAAAGGGCCTATGCCTCTGACACGAAAAAAGAGCAGGACGCGCAAAA
AATAAAGTTGGATTTGCTGCCAATCAAGTCCAGGGATGGTCAGATTATCA
CCCGTACGACAGAGGTGGATTACATACCTAAGCCCAAGCAGAAAAAGAAG
AATGAAGAAGAAGAGGAGGATGATTCCGAGGAAGACGGTGATACGGAGTA
TGAGGACAGCGATGACGATGTGGTCAATGATGTCGAGGCCGCCACCGCCG
CTCCCGTCCAAAAACTTATCTCTACCACGGATCTACTTATTGCCCGGCAG
CAGGAGATCGAACGCCAGAAGTATCGCATTGGAATCATTTGTTCCGGGCT
GCTCGAAAAGCCAGAGGATAAGATGCGCAACTTTCATGCTCTGTACGAAC
TCATGGACGAAATCAACCCAGCCAGTCGACAGGCCAACCTAATGGGCGTC
AGAAAGCTGGCCATAATCTCTGTCACCGAGATATCAAAGATATCTTGCCC
GAGTATCGAGTGGGTCAAGTCGACACCAAGATGCAGACGCTTCGCAAGGC
CACTCTTGATCGTG
BS08576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-PA | 2469 | CG1234-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
| CG1234-PA | 2469 | CG1234-RA | 869..949 | 884..964 | 380 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-RA | 2572 | CG1234-RA | 87..1035 | 17..964 | 4690 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7245883..7246822 | 964..26 | 4620 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 00:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6786 | 93..159 | 119 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..2677 | 92..141 | 117 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6835 | 93..151 | 115 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1129 | 93..151 | 113 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6819 | 93..159 | 112 | 65.7 | Plus |
BS08576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:22 Download gff for
BS08576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-PA | 1..949 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:08 Download gff for
BS08576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-PA | 1..949 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:48 Download gff for
BS08576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 87..1035 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:59 Download gff for
BS08576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 87..1035 | 17..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:59 Download gff for
BS08576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7245883..7246822 | 26..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:48 Download gff for
BS08576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3071605..3072544 | 26..964 | 99 | | Minus |
BS08576.complete Sequence
2501 bp assembled on 2010-05-10
GenBank Submission: KX805898
> BS08576.complete
GAAGTTATCAGTCGACATGGGAACTAAAAAGGTCAAAATCAGCTCGGTCA
AGCGGGCTGCTCACCTGAAGTCGAAAAAAACACCGCTTTCTAAGCAGCAG
CAACAAAAACAGAAGCAAAAGCGCGACCAACTGAAATCGAAGCGCGAACA
GGGTCAGAATATATTCTCCCAAAAGGCGAGAAAGCGGGACAACTTAGCAC
AGCGTAAAAAGCACAACAAATTGGCCTCCCTGGGCTTGGATCCGCTCGAG
GAAGACAACGAGGATGGCGACGATGAGATGCTTGAAAACGTTGCGGACAT
GCTGGATGGCGATGATCTTGCCCTGCTCCAGGCTAACAAACGCAAGCGAA
AGGCCAAGACGACCGGCGAGAATGATCCTGACCAAGGACAATCCATCGGC
TTGGAAAGGGCCTATGCCTCTGACACGAAAAAAGAGCAGGACGCGCAAAA
AATAAAGTTGGATTTGCTGCCAATCAAGTCCAGGGATGGTCAGATTATCA
CCCGTACGACAGAGGTGGATTACATACCTAAGCCCAAGCAGAAAAAGAAG
AATGAAGAAGAAGAGGAGGATGATTCCGAGGAAGACGGTGATACGGAGTA
TGAGGACAGCGATGACGATGTGGTCAATGATGTCGAGGCCGCCACCGCCG
CTCCCGTCCAAAAACTTATCTCTACCACGGATCTACTTATTGCCCGGCAG
CAGGAGATCGAACGCCAGAAGTATCGCATTGGAATCATTTGTTCCGGGCT
GCTCGAAAAGCCAGAGGATAAGATGCGCAACTTTCATGCTCTGTACGAAC
TCATGGACGAAATCAACCCAGCCAGTCGACAGGCCAACCTAATGGCCGTC
AGAAAGCTGGCCATAATCTCTGTCACCGAGATATTCAAAGATATCTTGCC
CGAGTATCGAGTGGGTCAGGTCGACACCAAGATGCAGACGCTTCGCAAGG
CCACTCTTGATCGTGTAACCTTTGAAAACGCCTTGCTTCAACAGTTTAAA
AAGTTCCTGCAGAAACTGGAACAGATCACAGCGCAAGTTAACAGGAGAGG
TGGTCTAAGGACGCCTCAGACTGTGAAGTTGGCCACCGTGGCAGTACAGT
GCATGTGTGACTTGCTTGTGGCACATCCATACTTTAACTACGTTCAAAAC
ATTGCCCAGCTTCTGGTGTATATGCTGAATTGCAATTATGCAGAGATGCG
AACGGCGGTCCATCAGTGCTTCCGCACAGTCTTTTCCAACGACAAACGGT
TAGAAATGACTCTTTTTATAGTGCGACGCATCAATCACTTGATCAAAACG
AAGCAGAACAATGTTCATGTGGAGTGCATCACCTGTCTGATGGGCCTTAA
AATCAAGAACGTAAACCTAGATGCCGAAAAGGAGAATGAGCTAAAGCAAA
AGAAGCTTGAGTCGCATCGTCAACGCTTACTAAGCTTGTCCAAGAAAGAG
CGCAAAAGACGTAAGAAGCTCACCGAGGTTAACAGAGAACTAGAGGAAAC
CCGTGCCGAGGAAAACAAGCAAGCAAAGCATCAGAAGCTCACCGAGATCA
TAAAGATGGTGTTTACCATTTACTTCCGCGTGCTTAAGAACGATCCCACC
TCCCGCGTGCTGAGCGCTATTCTAGAAGGATTGGCAGAGTTTGCGCACGT
CATTAATTTGGACTTCTTCTCCGATCTAATCGATGTGCTCAACCGCATTC
TAGAGGACCAAGACGAGCTGGGCTACCGGGAGCGATTGCACTGTGTTCAG
ACCATATTCGTTATCCTTTCCGGCCAGGGTGAGGTGCTAAACATCGACCC
CATCCGATTCTACCAGCACTTTTACCGAAATATGCTGGCGGTGCAGGCAG
GCAAAAATCACGATGACTTCGCCATTATTTTGCGAACTTTGGATGAGGTG
CTCGTAAAGCGTCGTCGCAATATGAGCCAGCAGCGTCTAATGGCCTTCAT
GAAACGCTTGCTTACTGGAAGTCTGCATCTGCTCCATAATGGCACCCTGG
CCACGCTTGGCACAATAAAACAAACCTTCCAGCTCACTTCTGTGCTTGAC
AACCTATTGGATACAGACACTACGATAGGCTCTGGTCGTTACGATCCCGA
ACTGGACGATCCTGAGTACTGTAACGCAGCAAGCACAGCGCTGTATGAGC
TTGCGCTTCTGGCACGTCACTATCATCCCACGGTGCGACGGATGGCCGTT
CACATTGCTCATGGAGTGCCAGCAACGGGCGAGGGAGCTTTGCCCACGGA
AATTGGCAAACTTACCTCCCACGAGCTGTTTACGCAATTCGACAGCACTC
AGATGGCTTTCAATCCGACAATACCGCTGCCAAAAGCGGGTCAACCAAAA
CTAAAAAGGGGCAAACACTTATATATTCGCTCGGACTTCAAACAGGAGTA
CGGAAAACTGCTGCAGCAAGGAAAAGTTTCACAGACGAAGGATAAACAAA
CCTTACAAATTGATTTTTTCAGTGCACTTCAATAAAAGCTTTCTAGACCA
T
BS08576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-RA | 2469 | CG1234-PA | 1..2469 | 17..2485 | 12345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-RA | 2572 | CG1234-RA | 87..2556 | 17..2486 | 12350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7245208..7246822 | 1640..26 | 8075 | 100 | Minus |
| 3R | 32079331 | 3R | 7244528..7245151 | 2262..1639 | 3120 | 100 | Minus |
| 3R | 32079331 | 3R | 7244248..7244471 | 2486..2263 | 1120 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6786 | 93..159 | 119 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..2677 | 92..141 | 117 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6835 | 93..151 | 115 | 66.1 | Plus |
BS08576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:53 Download gff for
BS08576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 85..2551 | 17..2483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:44 Download gff for
BS08576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 87..2553 | 17..2483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:16 Download gff for
BS08576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 87..2553 | 17..2483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:16 Download gff for
BS08576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7244251..7244471 | 2263..2483 | 100 | <- | Minus |
| 3R | 7244528..7245151 | 1639..2262 | 100 | <- | Minus |
| 3R | 7245210..7246822 | 26..1638 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:44 Download gff for
BS08576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3069973..3070193 | 2263..2483 | 100 | <- | Minus |
| arm_3R | 3070250..3070873 | 1639..2262 | 100 | <- | Minus |
| arm_3R | 3070932..3072544 | 26..1638 | 100 | | Minus |
BS08576.pep Sequence
Translation from 16 to 2484
> BS08576.pep
MGTKKVKISSVKRAAHLKSKKTPLSKQQQQKQKQKRDQLKSKREQGQNIF
SQKARKRDNLAQRKKHNKLASLGLDPLEEDNEDGDDEMLENVADMLDGDD
LALLQANKRKRKAKTTGENDPDQGQSIGLERAYASDTKKEQDAQKIKLDL
LPIKSRDGQIITRTTEVDYIPKPKQKKKNEEEEEDDSEEDGDTEYEDSDD
DVVNDVEAATAAPVQKLISTTDLLIARQQEIERQKYRIGIICSGLLEKPE
DKMRNFHALYELMDEINPASRQANLMAVRKLAIISVTEIFKDILPEYRVG
QVDTKMQTLRKATLDRVTFENALLQQFKKFLQKLEQITAQVNRRGGLRTP
QTVKLATVAVQCMCDLLVAHPYFNYVQNIAQLLVYMLNCNYAEMRTAVHQ
CFRTVFSNDKRLEMTLFIVRRINHLIKTKQNNVHVECITCLMGLKIKNVN
LDAEKENELKQKKLESHRQRLLSLSKKERKRRKKLTEVNRELEETRAEEN
KQAKHQKLTEIIKMVFTIYFRVLKNDPTSRVLSAILEGLAEFAHVINLDF
FSDLIDVLNRILEDQDELGYRERLHCVQTIFVILSGQGEVLNIDPIRFYQ
HFYRNMLAVQAGKNHDDFAIILRTLDEVLVKRRRNMSQQRLMAFMKRLLT
GSLHLLHNGTLATLGTIKQTFQLTSVLDNLLDTDTTIGSGRYDPELDDPE
YCNAASTALYELALLARHYHPTVRRMAVHIAHGVPATGEGALPTEIGKLT
SHELFTQFDSTQMAFNPTIPLPKAGQPKLKRGKHLYIRSDFKQEYGKLLQ
QGKVSQTKDKQTLQIDFFSALQ*
BS08576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-PA | 822 | CG1234-PA | 1..822 | 1..822 | 4176 | 100 | Plus |
