Clone Sequence Records
BS08577.3prime Sequence
872 bp (779 high quality bases) assembled on 2006-01-10
> BS08577.3prime
ATGGTCTAGAAAGCTTTTAAAACTCAAACATTTTATTCTTGCTTTTACGC
GTCTGCTGTTCCTTGCTTAAGCTGCGTTCCTGTGCCTGCAGCGTGGCTAG
CTCCTGTTTGTGGCTTTGCATCTGCACTTGTAGTCGCTTCTGGAGCTGCG
CATCTCCAGAATTCCGGTCCAGGGACTGTTTAACCTTGGCCATATCTCTT
TGCTTTCGGCGGATTTCATCAGCAATTCGCACTGTTTCCACGTTAAGAGT
TTTGGTTGAGTGCTGCTGTAGCTCGTTGGTCTTAGCTTTCTTGGTCACCT
GCTCGCCTTGCTGAGTGCTTTCTCCAGGCCCCAAAACACTGTCGTTTAAG
AATGTAAAGACATCCACACGTTGTGACTCACGGACGTAGGCCTTCTCATC
AGCCTTTCGCTGTCGTCGCTGGGCGCGCTTTAGCTTTCGTTCCACGCTAA
AATAATCCTTGTCCCCGTTGGCGGCCTCACGCAGCTCCATGCAGGCATCT
AGAGATCGACCCTGGGGAAGTATCTGGGCGCTTACCGGGGTGACGATTCC
CCTTCCATCTGAGCCAAGACCAGTACCATGGATGTAACCCATTTTCTCCA
TAAGCTTAGAGCCGATGCCCCGTGTGAACTCCTCCCAGGCGCCAAGTCGT
TCCGTCGGCTTAAAGGTAAACAAACTCAACTCGACCATGCGTGCTCTTCT
AGCTTCCTCCAGATCATCCATATCCGACTCCGCCTCGTCACTGCTGTTGT
CGTTCATGCTGGAGTTGCTCTCCTCGCTGGAGAGCTCGTCATCCTCATCC
TGATCGGTGGTAAGTGGATACAGTTCTTCAAACTTGAAGTCTCGTTCCCG
CTCCTTGTGATCCTGCCCATCC
BS08577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-PA | 1542 | CG4709-RA | 687..1542 | 872..17 | 4255 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1731 | CG4709-RB | 876..1731 | 872..17 | 4265 | 99.9 | Minus |
CG4709-RA | 1602 | CG4709-RA | 747..1602 | 872..17 | 4265 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9955573..9956176 | 620..17 | 3020 | 100 | Minus |
2L | 23513712 | 2L | 9955261..9955514 | 872..619 | 1255 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-01 07:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2819 | 770..735 | 108 | 77.8 | Minus |
BS08577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:23 Download gff for
BS08577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 687..1542 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:10 Download gff for
BS08577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 687..1542 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:05 Download gff for
BS08577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 747..1602 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:42:00 Download gff for
BS08577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 747..1602 | 17..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:42:00 Download gff for
BS08577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9955261..9955513 | 620..872 | 99 | -> | Minus |
2L | 9955574..9956176 | 17..619 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:05 Download gff for
BS08577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9955261..9955513 | 620..872 | 99 | -> | Minus |
arm_2L | 9955574..9956176 | 17..619 | 100 | | Minus |
BS08577.5prime Sequence
851 bp (850 high quality bases) assembled on 2006-01-10
> BS08577.5prime
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
G
BS08577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-PA | 1542 | CG4709-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1731 | CG4709-RB | 190..1024 | 17..851 | 4175 | 100 | Plus |
CG4709-RA | 1602 | CG4709-RA | 61..895 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9954592..9955409 | 34..851 | 4075 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-10 02:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2819 | 805..840 | 108 | 77.8 | Plus |
BS08577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:24 Download gff for
BS08577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:11 Download gff for
BS08577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:25 Download gff for
BS08577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..895 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:19 Download gff for
BS08577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..895 | 17..851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:19 Download gff for
BS08577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
2L | 9954596..9955409 | 38..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:25 Download gff for
BS08577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
arm_2L | 9954596..9955409 | 38..851 | 100 | | Plus |
BS08577.complete Sequence
1574 bp (1574 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636202
> BS08577.complete
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
GATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAG
TTTGTTTACCTTTAAGCCGACGGAACGACTTGGCGCCTGGGAGGAGTTCA
CACGGGGCATCGGCTCTAAGCTTATGGAGAAAATGGGTTACATCCATGGT
ACTGGTCTTGGCTCAGATGGAAGGGGAATCGTCACCCCGGTAAGCGCCCA
GATACTTCCCCAGGGTCGATCTCTAGATGCCTGCATGGAGCTGCGTGAGG
CCGCCAACGGGGACAAGGATTATTTTAGCGTGGAACGAAAGCTAAAGCGC
GCCCAGCGACGACAGCGAAAGGCTGATGAGAAGGCCTACGTCCGTGAGTC
ACAACGTGTGGATGTCTTTACATTCTTAAACGACAGTGTTTTGGGGCCTG
GAGAAAGCACTCAGCAAGGCGAGCAGGTGACCAAGAAAGCTAAGACCAAC
GAGCTACAGCAGCACTCAACCAAAACTCTTAACGTGGAAACAGTGCGAAT
TGCTGATGAAATCCGCCGAAAGCAAAGAGATATGGCCAAGGTTAAACAGT
CCCTGGACCGGAATTCTGGAGATGCGCAGCTCCAGAAGCGACTACAAGTG
CAGATGCAAAGCCACAAACAGGAGCTAGCCACGCTGCAGGCACAGGAACG
CAGCTTAAGCAAGGAACAGCAGACGCGTAAAAGCAAGAATAAAATGTTTG
AGTTTTAAAAGCTTTCTAGACCAT
BS08577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1542 | CG4709-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
CG4709-RA | 1542 | CG4709-PA | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1731 | CG4709-RB | 190..1731 | 17..1558 | 7710 | 100 | Plus |
CG4709-RA | 1602 | CG4709-RA | 61..1602 | 17..1558 | 7710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9954592..9955514 | 34..956 | 4600 | 99.9 | Plus |
2L | 23513712 | 2L | 9955573..9956176 | 955..1558 | 3020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:54 has no hits.
BS08577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:38 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 1..1542 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:24 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 66..1610 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:59 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..1600 | 17..1556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:38 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 66..1610 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:23 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..1600 | 17..1556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:23 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
2L | 9954596..9955513 | 38..955 | 100 | -> | Plus |
2L | 9955574..9956174 | 956..1556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:59 Download gff for
BS08577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
arm_2L | 9954596..9955513 | 38..955 | 100 | -> | Plus |
arm_2L | 9955574..9956174 | 956..1556 | 100 | | Plus |
BS08577.pep Sequence
Translation from 16 to 1557
> BS08577.pep
MEEYEAQLLVVEQALENAADDAQRQDLLALKNNLQELLALTRESGDEAPI
DELPQQGDNLDDELQRLKSELNDLEAAGSSQTALDEERQLADLRTKYTAM
VGEKCSAPHEHSWGTCYHNALICGVDDEVVMNSEGVLDARLRVLFTNPTH
REMLPCSYYLEGECRFDEAKCRFSHGALVTGSSIRKYNPPDFHKLSRSRP
VFALLPDRLWHRGRVLCVNFVEQICRVRLDGQDHKERERDFKFEELYPLT
TDQDEDDELSSEESNSSMNDNSSDEAESDMDDLEEARRARMVELSLFTFK
PTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQG
RSLDACMELREAANGDKDYFSVERKLKRAQRRQRKADEKAYVRESQRVDV
FTFLNDSVLGPGESTQQGEQVTKKAKTNELQQHSTKTLNVETVRIADEIR
RKQRDMAKVKQSLDRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKE
QQTRKSKNKMFEF*
BS08577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-PB | 513 | CG4709-PB | 1..513 | 1..513 | 2637 | 100 | Plus |
CG4709-PA | 513 | CG4709-PA | 1..513 | 1..513 | 2637 | 100 | Plus |