Clone BS08577 Report

Search the DGRC for BS08577

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG4709-RA
Protein status:BS08577.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08577.3prime Sequence

872 bp (779 high quality bases) assembled on 2006-01-10

> BS08577.3prime
ATGGTCTAGAAAGCTTTTAAAACTCAAACATTTTATTCTTGCTTTTACGC
GTCTGCTGTTCCTTGCTTAAGCTGCGTTCCTGTGCCTGCAGCGTGGCTAG
CTCCTGTTTGTGGCTTTGCATCTGCACTTGTAGTCGCTTCTGGAGCTGCG
CATCTCCAGAATTCCGGTCCAGGGACTGTTTAACCTTGGCCATATCTCTT
TGCTTTCGGCGGATTTCATCAGCAATTCGCACTGTTTCCACGTTAAGAGT
TTTGGTTGAGTGCTGCTGTAGCTCGTTGGTCTTAGCTTTCTTGGTCACCT
GCTCGCCTTGCTGAGTGCTTTCTCCAGGCCCCAAAACACTGTCGTTTAAG
AATGTAAAGACATCCACACGTTGTGACTCACGGACGTAGGCCTTCTCATC
AGCCTTTCGCTGTCGTCGCTGGGCGCGCTTTAGCTTTCGTTCCACGCTAA
AATAATCCTTGTCCCCGTTGGCGGCCTCACGCAGCTCCATGCAGGCATCT
AGAGATCGACCCTGGGGAAGTATCTGGGCGCTTACCGGGGTGACGATTCC
CCTTCCATCTGAGCCAAGACCAGTACCATGGATGTAACCCATTTTCTCCA
TAAGCTTAGAGCCGATGCCCCGTGTGAACTCCTCCCAGGCGCCAAGTCGT
TCCGTCGGCTTAAAGGTAAACAAACTCAACTCGACCATGCGTGCTCTTCT
AGCTTCCTCCAGATCATCCATATCCGACTCCGCCTCGTCACTGCTGTTGT
CGTTCATGCTGGAGTTGCTCTCCTCGCTGGAGAGCTCGTCATCCTCATCC
TGATCGGTGGTAAGTGGATACAGTTCTTCAAACTTGAAGTCTCGTTCCCG
CTCCTTGTGATCCTGCCCATCC

BS08577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PA 1542 CG4709-RA 687..1542 872..17 4255 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1731 CG4709-RB 876..1731 872..17 4265 99.9 Minus
CG4709-RA 1602 CG4709-RA 747..1602 872..17 4265 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9955573..9956176 620..17 3020 100 Minus
2L 23513712 2L 9955261..9955514 872..619 1255 99.6 Minus
Blast to na_te.dros performed 2015-02-01 07:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2784..2819 770..735 108 77.8 Minus

BS08577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:23 Download gff for BS08577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 687..1542 17..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:10 Download gff for BS08577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 687..1542 17..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:05 Download gff for BS08577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 747..1602 17..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:42:00 Download gff for BS08577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 747..1602 17..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:42:00 Download gff for BS08577.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9955261..9955513 620..872 99 -> Minus
2L 9955574..9956176 17..619 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:05 Download gff for BS08577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9955261..9955513 620..872 99 -> Minus
arm_2L 9955574..9956176 17..619 100   Minus

BS08577.5prime Sequence

851 bp (850 high quality bases) assembled on 2006-01-10

> BS08577.5prime
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
G

BS08577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PA 1542 CG4709-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1731 CG4709-RB 190..1024 17..851 4175 100 Plus
CG4709-RA 1602 CG4709-RA 61..895 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9954592..9955409 34..851 4075 99.9 Plus
Blast to na_te.dros performed 2015-02-10 02:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2784..2819 805..840 108 77.8 Plus

BS08577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:24 Download gff for BS08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:11 Download gff for BS08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:25 Download gff for BS08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..895 17..851 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:19 Download gff for BS08577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..895 17..851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:19 Download gff for BS08577.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9954514..9954534 17..37 100 -> Plus
2L 9954596..9955409 38..851 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:25 Download gff for BS08577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9954514..9954534 17..37 100 -> Plus
arm_2L 9954596..9955409 38..851 100   Plus

BS08577.complete Sequence

1574 bp (1574 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636202

> BS08577.complete
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
GATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAG
TTTGTTTACCTTTAAGCCGACGGAACGACTTGGCGCCTGGGAGGAGTTCA
CACGGGGCATCGGCTCTAAGCTTATGGAGAAAATGGGTTACATCCATGGT
ACTGGTCTTGGCTCAGATGGAAGGGGAATCGTCACCCCGGTAAGCGCCCA
GATACTTCCCCAGGGTCGATCTCTAGATGCCTGCATGGAGCTGCGTGAGG
CCGCCAACGGGGACAAGGATTATTTTAGCGTGGAACGAAAGCTAAAGCGC
GCCCAGCGACGACAGCGAAAGGCTGATGAGAAGGCCTACGTCCGTGAGTC
ACAACGTGTGGATGTCTTTACATTCTTAAACGACAGTGTTTTGGGGCCTG
GAGAAAGCACTCAGCAAGGCGAGCAGGTGACCAAGAAAGCTAAGACCAAC
GAGCTACAGCAGCACTCAACCAAAACTCTTAACGTGGAAACAGTGCGAAT
TGCTGATGAAATCCGCCGAAAGCAAAGAGATATGGCCAAGGTTAAACAGT
CCCTGGACCGGAATTCTGGAGATGCGCAGCTCCAGAAGCGACTACAAGTG
CAGATGCAAAGCCACAAACAGGAGCTAGCCACGCTGCAGGCACAGGAACG
CAGCTTAAGCAAGGAACAGCAGACGCGTAAAAGCAAGAATAAAATGTTTG
AGTTTTAAAAGCTTTCTAGACCAT

BS08577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1542 CG4709-PB 1..1542 17..1558 7710 100 Plus
CG4709-RA 1542 CG4709-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1731 CG4709-RB 190..1731 17..1558 7710 100 Plus
CG4709-RA 1602 CG4709-RA 61..1602 17..1558 7710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9954592..9955514 34..956 4600 99.9 Plus
2L 23513712 2L 9955573..9956176 955..1558 3020 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:33:54 has no hits.

BS08577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:38 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1542 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:24 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 66..1610 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:59 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..1600 17..1556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:38 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 66..1610 17..1560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:23 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..1600 17..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:23 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9954514..9954534 17..37 100 -> Plus
2L 9954596..9955513 38..955 100 -> Plus
2L 9955574..9956174 956..1556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:59 Download gff for BS08577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9954514..9954534 17..37 100 -> Plus
arm_2L 9954596..9955513 38..955 100 -> Plus
arm_2L 9955574..9956174 956..1556 100   Plus

BS08577.pep Sequence

Translation from 16 to 1557

> BS08577.pep
MEEYEAQLLVVEQALENAADDAQRQDLLALKNNLQELLALTRESGDEAPI
DELPQQGDNLDDELQRLKSELNDLEAAGSSQTALDEERQLADLRTKYTAM
VGEKCSAPHEHSWGTCYHNALICGVDDEVVMNSEGVLDARLRVLFTNPTH
REMLPCSYYLEGECRFDEAKCRFSHGALVTGSSIRKYNPPDFHKLSRSRP
VFALLPDRLWHRGRVLCVNFVEQICRVRLDGQDHKERERDFKFEELYPLT
TDQDEDDELSSEESNSSMNDNSSDEAESDMDDLEEARRARMVELSLFTFK
PTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQG
RSLDACMELREAANGDKDYFSVERKLKRAQRRQRKADEKAYVRESQRVDV
FTFLNDSVLGPGESTQQGEQVTKKAKTNELQQHSTKTLNVETVRIADEIR
RKQRDMAKVKQSLDRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKE
QQTRKSKNKMFEF*

BS08577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PB 513 CG4709-PB 1..513 1..513 2637 100 Plus
CG4709-PA 513 CG4709-PA 1..513 1..513 2637 100 Plus