Clone BS08587 Report

Search the DGRC for BS08587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptIrp-1A-RA
Protein status:BS08587.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08587.3prime Sequence

913 bp (856 high quality bases) assembled on 2006-01-10

> BS08587.3prime
ATGGTCTAGAAAGCTTCTAATCCAGCATTTTGCGTATCATATAGTTCAAA
ATGCCGCCATTCTTGTAGTACGTTATGTCCACCTCGGTGTCGAAACGCAA
CGTGGTCTCAAAGACATTGCCATCAGCATCGACCTGAATCCTCTGGCCCG
GCTTCAGTTCGCCCTCGGGCAGGACAATGTTGTACACCTCCCTGCCACTC
AGTTTCAGGGTATCGGCGCTCTGGCCAGGCAAGAACTGCAGCGGAATGAT
GCCCATGCCCACCAGATTTGAGCGGTGAATGCGCTCGTACGATTCAGCAA
TCACCGCCTTGATGCCCAGCAGAAATGGCCCCTTGGCGGCCCAATCACGT
GAGCTGCCACTGCCGTAGTCCTTGCCTACGACCAGAACCAAAGGTGTTCC
TTCGCTCGCATACCGTTCCGCCGCATCGAAGATGTCCATCTCCTCGCCAC
TGGGCACGTGCAGTGTGCTGGGTCCCGTCTTGGATGCCAGTTTATTGACC
AGACGGATGTTGGCAAAGGTTCCGCGTGCCATCACCGCATCATTGCCACG
TCTGGATCCATACGAATTAAAGTCGCGCGGCGTTAGACCCCTTTCCGACA
AATAGCGCGCTGCCGGTGACTTTCGTGCAATGGATCCGGCTGGCGAGATA
TGATCGGTGGTCACTGAATCACCGAGAAGCAGCAGACAGCGAGCCTTCTC
GATACCTTTAAGTTTGGGCAGCGCACGAGTCATACCCTCGAAGAACGGTG
GTAGTTTGATGTATGTTGATATTTCACTCCATGGATACAACTTGCTATCC
GACACCTCCAACGTTTGCCAGTCCCTGGATCCCAGTTGAATTTTGCTGTA
CACCTCCTGGAACATGGCGGGAATGACGTGCTTATGCTCTACCTCCTGAA
TCTCACTGCGCGT

BS08587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4900-PA 2709 Irp-1A-RA 1813..2709 913..17 4485 100 Minus
CG6342-PA 2700 Irp-1B-RA 2338..2480 379..237 315 88.8 Minus
CG6342-PA 2700 Irp-1B-RA 1846..1878 871..839 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2882 CG4900-RA 1876..2772 913..17 4485 100 Minus
Irp-1B-RA 2901 CG6342-RA 1867..2747 904..24 1450 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22721430..22722259 17..846 4150 100 Plus
3R 32079331 3R 10408949..10409657 138..846 980 75.9 Plus
3R 32079331 3R 22722323..22722390 846..913 340 100 Plus
3R 32079331 3R 10408772..10408875 24..127 265 83.7 Plus
Blast to na_te.dros performed on 2015-02-12 18:17:39 has no hits.

BS08587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:41 Download gff for BS08587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1813..2709 17..913 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:35 Download gff for BS08587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1813..2709 17..913 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:10 Download gff for BS08587.3prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 1876..2772 17..913 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:47 Download gff for BS08587.3prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 1876..2772 17..913 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:47 Download gff for BS08587.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22721430..22722259 17..846 100 <- Plus
3R 22722324..22722390 847..913 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:10 Download gff for BS08587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18548046..18548112 847..913 100   Plus
arm_3R 18547152..18547981 17..846 100 <- Plus

BS08587.5prime Sequence

903 bp (785 high quality bases) assembled on 2006-01-10

> BS08587.5prime
GAAGTTATCAGTCGACATGTCCGGCTCCGGCGCCAATCCCTTTGCCCAGT
TCCAGGAGTCATTCACCCAGGACGGCAACGTCTACAAGTATTTTGATCTG
CCCTCCATCGACAGCAAATATGAGTCACTGCCCTTTTCCATTCGCGTTCT
GCTGGAATCAGCGGTGCGCAACTGTGACAACTTTCATGTGCTGGAGAAGG
ATGTGCAGAGCATCCTGGGATGGACTCCATCGCTGAAGCAGGAAACCAGC
GATGTGGAAGTCTCCTTCAAGCCAGCTCGTGTTATATTGCAGGACTTTAC
TGGCGTTCCCGCCGTCGTGGATTTTGCTGCCATGCGGGATGCTGTCCGCG
AGCTGGGCGGCAATCCTGAGAAAATCAATCCCATCTGCCCTGCCGACCTG
GTCATCGACCATTCCGTTCAGGTGGATTTCGTTCGCTCCTCGGACGCATT
GACCAAGAACGAGTCACTAGAGTTCCAGCGCAACAAGGAACGATTCACCT
TCCTCAAATGGGGAGCTCGCGCTTTTGACAATATGCTAATTGTGCCACCC
GGCTCTGGCATTGTGCACCAGGTTAACCTGGAGTATCTGGCCCGAGTGGT
TTTCGAAAGCGACAGTTCAGCGGACGGATCTAAGATCCTTTATCCGGATA
GCGTTGTGGGCACTGACTCCCACACTACAATGATCAATGGATTAGGTGTT
CTCGGCTGGGGTGTTGGCGGTATCGAGGCGGAGGCCGTAATGTTGGGCCA
GTCCATTTCCATGCTGTTGCCAGAGGTGATTGGCTACAGGCTGGAGGGCA
AACTGGGCCCTCTGGCCACATCCACCGATCTGGTGCTGACATTACCAAGC
ATTTGCGTCAGCTTGGTGTCGTCGGCAAGTTCGTGGAGTTTAACGGCCCG
GAG

BS08587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4900-PA 2709 Irp-1A-RA 1..824 17..840 4120 100 Plus
CG4900-PA 2709 Irp-1A-RA 825..884 840..899 275 98.3 Plus
CG6342-PA 2700 Irp-1B-RA 715..815 740..840 255 90 Plus
CG6342-PA 2700 Irp-1B-RA 346..386 368..408 155 95.1 Plus
CG6342-PA 2700 Irp-1B-RA 139..201 161..223 140 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2882 CG4900-RA 64..947 17..899 4380 99.8 Plus
Irp-1B-RA 2901 CG6342-RA 61..931 29..901 1745 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22723444..22724054 899..290 2990 99.7 Minus
3R 32079331 3R 22724117..22724288 293..122 860 100 Minus
3R 32079331 3R 10410899..10411270 901..528 755 81.3 Minus
3R 32079331 3R 10411356..10411569 504..291 470 81.3 Minus
3R 32079331 3R 22724359..22724452 122..29 470 100 Minus
3R 32079331 3R 10411628..10411794 293..127 340 80.2 Minus
3R 32079331 3R 10412620..10412713 122..29 185 79.8 Minus
Blast to na_te.dros performed on 2015-02-04 01:24:12 has no hits.

BS08587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:42 Download gff for BS08587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1..889 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:37 Download gff for BS08587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1..889 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:36 Download gff for BS08587.5prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 58..952 12..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:11 Download gff for BS08587.5prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 58..952 12..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:11 Download gff for BS08587.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22723439..22724051 293..903 99 <- Minus
3R 22724118..22724287 123..292 100 <- Minus
3R 22724359..22724451 30..122 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:36 Download gff for BS08587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18549161..18549773 293..903 99 <- Minus
arm_3R 18549840..18550009 123..292 100 <- Minus
arm_3R 18550081..18550173 30..122 100 <- Minus

BS08587.complete Sequence

2741 bp assembled on 2008-01-16

GenBank Submission: FJ638813

> BS08587.complete
GAAGTTATCAGTCGACATGTCCGGCTCCGGCGCCAATCCCTTTGCCCAGT
TCCAGGAGTCATTCACCCAGGACGGCAACGTCTACAAGTATTTTGATCTG
CCCTCCATCGACAGCAAATATGAGTCACTGCCCTTTTCCATTCGCGTTCT
GCTGGAATCAGCGGTGCGCAACTGTGACAACTTTCATGTGCTGGAGAAGG
ATGTGCAGAGCATCCTGGGATGGACTCCATCGCTGAAGCAGGAAACCAGC
GATGTGGAAGTCTCCTTCAAGCCAGCTCGTGTTATATTGCAGGACTTTAC
TGGCGTTCCCGCCGTCGTGGATTTTGCTGCCATGCGGGATGCTGTCCGCG
AGCTGGGCGGCAATCCTGAGAAAATCAATCCCATCTGCCCTGCCGACCTG
GTCATCGACCATTCCGTTCAGGTGGATTTCGTTCGCTCCTCGGACGCATT
GACCAAGAACGAGTCACTAGAGTTCCAGCGCAACAAGGAACGATTCACCT
TCCTCAAATGGGGAGCTCGCGCTTTTGACAATATGCTAATTGTGCCACCC
GGCTCTGGCATTGTGCACCAGGTTAACCTGGAGTATCTGGCCCGAGTGGT
TTTCGAAAGCGACAGTTCAGCGGACGGATCTAAGATCCTTTATCCGGATA
GCGTTGTGGGCACTGACTCCCACACTACAATGATCAATGGATTAGGTGTT
CTCGGCTGGGGTGTTGGCGGTATCGAGGCGGAGGCCGTAATGTTGGGCCA
GTCCATTTCCATGCTGTTGCCAGAGGTGATTGGCTACAGGCTGGAGGGCA
AACTGGGCCCTCTGGCCACATCCACCGATCTGGTGCTGACCATTACCAAG
CATTTGCGTCAGCTTGGTGTCGTCGGCAAGTTCGTGGAGTTTTACGGCCC
CGGAGTGGCAGAGCTCAGCATCGCGGATCGCGCCACCATCAGCAACATGT
GTCCGGAATATGGAGCCACTGTGGGTTACTTCCCAATCGATGAAAACACG
CTGAGTTACATGCGCCAAACCAATCGCTCCGAGAAGAAAATCGATATTAT
CCGGAAGTATTTGAAGGCCACTCGACAACTTCGTGACTATTCCCTTGTGG
ATCAGGATCCCCAATACACGGAGTCTGTAACTTTGGACTTATCCACCGTG
GTGACCTCGGTTTCGGGGCCCAAGCGACCGCACGATCGCGTTTCAGTTTC
CAGCATGTGCGAAGACTTCAAGTCGTGCCTCATAAGTCCTGTCGGCTTCA
AGGGATTCGCCATACCACCGAGTGCATTGGCTGCAAGTGGTGAATTCCAA
TGGGACGATGGGAAGAGCTATAAGATAGGTCATGGATCTGTTGTGATTGC
CGCCATCACCTCGTGCACGAACACTTCGAATCCCTCGGTGATGTTGGGCG
CTGGTCTGCTGGCCAAGAATGCCGTGCAGAAGGGCTTGAGTATTTTGCCG
TATATCAAGACCTCATTGTCACCAGGATCTGGCGTGGTTACCTACTATCT
GAGGGAATCCGGTGTGATTCCCTATCTGGAGCAGCTGGGCTTCGACATTG
TGGGCTATGGCTGTATGACCTGCATTGGCAACTCGGGCCCGCTCGATGAG
AACGTAGTGAACACCATCGAGAAGAACGGACTGGTTTGCTGTGGCGTCCT
GTCGGGCAATCGCAATTTCGAGGGTCGCATCCATCCCAATACTAGGGCCA
ATTATCTGGCCAGTCCGCTGCTGGTGATTGCCTACGCGATTGCCGGCCGT
GTGGATATTGATTTCGAGATCGAACCGCTGGGCGTGGATTCCAACGGCAA
GGAGGTGTTCCTGCGCGATATCTGGCCAACGCGCAGTGAGATTCAGGAGG
TAGAGCATAAGCACGTCATTCCCGCCATGTTCCAGGAGGTGTACAGCAAA
ATTCAACTGGGATCCAGGGACTGGCAAACGTTGGAGGTGTCGGATAGCAA
GTTGTATCCATGGAGTGAAATATCAACATACATCAAACTACCACCGTTCT
TCGAGGGTATGACTCGTGCGCTGCCCAAACTTAAAGGTATCGAGAAGGCT
CGCTGTCTGCTGCTTCTCGGTGATTCAGTGACCACCGATCATATCTCGCC
AGCCGGATCCATTGCACGAAAGTCACCGGCAGCGCGCTATTTGTCGGAAA
GGGGTCTAACGCCGCGCGACTTTAATTCGTATGGATCCAGACGTGGCAAT
GATGCGGTGATGGCACGCGGAACCTTTGCCAACATCCGTCTGGTCAATAA
ACTGGCATCCAAGACGGGACCCAGCACACTGCACGTGCCCAGTGGCGAGG
AGATGGACATCTTCGATGCGGCGGAACGGTATGCGAGCGAAGGAACACCT
TTGGTTCTGGTCGTAGGCAAGGACTACGGCAGTGGCAGCTCACGTGATTG
GGCCGCCAAGGGGCCATTTCTGCTGGGCATCAAGGCGGTGATTGCTGAAT
CGTACGAGCGCATTCACCGCTCAAATCTGGTGGGCATGGGCATCATTCCG
CTGCAGTTCTTGCCTGGCCAGAGCGCCGATACCCTGAAACTGAGTGGCAG
GGAGGTGTACAACATTGTCCTGCCCGAGGGCGAACTGAAGCCGGGCCAGA
GGATTCAGGTCGATGCTGATGGCAATGTCTTTGAGACCACGTTGCGTTTC
GACACCGAGGTGGACATAACGTACTACAAGAATGGCGGCATTTTGAACTA
TATGATACGCAAAATGCTGGATTAGAAGCTTTCTAGACCAT

BS08587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2709 CG4900-PA 1..2709 17..2725 13545 100 Plus
Irp-1B-RA 2700 CG6342-PA 7..2693 29..2718 4760 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2882 CG4900-RA 64..2772 17..2725 13545 100 Plus
Irp-1B-RA 2901 CG6342-RA 61..2747 29..2718 4760 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22721430..22722259 2725..1896 4150 100 Minus
3R 32079331 3R 22722323..22723097 1896..1122 3875 100 Minus
3R 32079331 3R 22723322..22724054 1022..290 3665 100 Minus
3R 32079331 3R 10409716..10410324 1896..1288 1410 82.1 Minus
3R 32079331 3R 10410789..10411270 1012..528 1070 81.9 Minus
3R 32079331 3R 10408949..10409657 2604..1896 980 75.9 Minus
3R 32079331 3R 22724117..22724288 293..122 860 100 Minus
3R 32079331 3R 22723159..22723259 1123..1023 505 100 Minus
3R 32079331 3R 10411356..10411569 504..291 470 81.3 Minus
3R 32079331 3R 22724359..22724452 122..29 470 100 Minus
3R 32079331 3R 10411628..10411794 293..127 340 80.2 Minus
3R 32079331 3R 10408772..10408875 2718..2615 265 83.7 Minus
3R 32079331 3R 10410450..10410532 1230..1148 190 81.9 Minus
3R 32079331 3R 10412620..10412713 122..29 185 79.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:44:21 has no hits.

BS08587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:29 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 1..2709 17..2725 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:01 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 80..2788 17..2725 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:44 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 64..2772 17..2725 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:29 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 74..2788 12..2725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:41 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 64..2772 17..2725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:41 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22721430..22722259 1896..2725 100 <- Minus
3R 22722324..22723095 1124..1895 100 <- Minus
3R 22723159..22723259 1023..1123 100 <- Minus
3R 22723322..22724051 293..1022 100 <- Minus
3R 22724118..22724287 123..292 100 <- Minus
3R 22724359..22724451 30..122 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:44 Download gff for BS08587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18547152..18547981 1896..2725 100 <- Minus
arm_3R 18548046..18548817 1124..1895 100 <- Minus
arm_3R 18548881..18548981 1023..1123 100 <- Minus
arm_3R 18549044..18549773 293..1022 100 <- Minus
arm_3R 18549840..18550009 123..292 100 <- Minus
arm_3R 18550081..18550173 30..122 100 <- Minus

BS08587.pep Sequence

Translation from 16 to 2724

> BS08587.pep
MSGSGANPFAQFQESFTQDGNVYKYFDLPSIDSKYESLPFSIRVLLESAV
RNCDNFHVLEKDVQSILGWTPSLKQETSDVEVSFKPARVILQDFTGVPAV
VDFAAMRDAVRELGGNPEKINPICPADLVIDHSVQVDFVRSSDALTKNES
LEFQRNKERFTFLKWGARAFDNMLIVPPGSGIVHQVNLEYLARVVFESDS
SADGSKILYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQSISML
LPEVIGYRLEGKLGPLATSTDLVLTITKHLRQLGVVGKFVEFYGPGVAEL
SIADRATISNMCPEYGATVGYFPIDENTLSYMRQTNRSEKKIDIIRKYLK
ATRQLRDYSLVDQDPQYTESVTLDLSTVVTSVSGPKRPHDRVSVSSMCED
FKSCLISPVGFKGFAIPPSALAASGEFQWDDGKSYKIGHGSVVIAAITSC
TNTSNPSVMLGAGLLAKNAVQKGLSILPYIKTSLSPGSGVVTYYLRESGV
IPYLEQLGFDIVGYGCMTCIGNSGPLDENVVNTIEKNGLVCCGVLSGNRN
FEGRIHPNTRANYLASPLLVIAYAIAGRVDIDFEIEPLGVDSNGKEVFLR
DIWPTRSEIQEVEHKHVIPAMFQEVYSKIQLGSRDWQTLEVSDSKLYPWS
EISTYIKLPPFFEGMTRALPKLKGIEKARCLLLLGDSVTTDHISPAGSIA
RKSPAARYLSERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLASKT
GPSTLHVPSGEEMDIFDAAERYASEGTPLVLVVGKDYGSGSSRDWAAKGP
FLLGIKAVIAESYERIHRSNLVGMGIIPLQFLPGQSADTLKLSGREVYNI
VLPEGELKPGQRIQVDADGNVFETTLRFDTEVDITYYKNGGILNYMIRKM
LD*

BS08587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-PA 902 CG4900-PA 1..902 1..902 4651 100 Plus
Irp-1B-PA 899 CG6342-PA 2..898 4..901 4122 87.6 Plus
CG4706-PA 783 CG4706-PA 65..772 60..896 512 27.6 Plus
Acon-PF 787 CG9244-PF 99..782 85..896 475 25.9 Plus
Acon-PE 787 CG9244-PE 99..782 85..896 475 25.9 Plus