Clone Sequence Records
BS08591.3prime Sequence
876 bp (828 high quality bases) assembled on 2006-01-10
> BS08591.3prime
ATGGTCTAGAAAGCTTTTAGTACTTGTAACGATAAATAGCGACGCCAGCC
ACTCCAATTAATATCGTACCCATTAGATAGCCAAGCAGCTTCAGCTTGGA
ATTGTCGACAAGCGGCTGCTTTTGCCTGGTGGCAGTATTCTGCTCCATTT
TTTTGGCCTGGCCCAGCATCTTTTGATACATCTCCTTTTCGTTGTGCTCC
TCACGACGAGCCTTGATGAAAAGTCTGGCCAAATCCGATTGAACGGCTCG
ATTTTCGGGTTCGAGAGTAGCCACTTTTTGCAGTAGCTTAATAGCACCCT
GGGTGTCCGCTTTGCCCTCCAATATTCTTCCTTTGCGATACAAGGCTTTG
GAGTTATTTGGCTGGCACCGCAGCACATGCTCCACGGACTGCAGAGCTGC
GTCATAAGCGGCAATCTTGATTTGAGTCATTGCCAAGTTATTGTAAACGA
TCAACCGATCCTCTAGCAGGGTCTGCGTGTCACTGTTCGAGAGCTCCAAG
TCTTCCTTGTCGAACTCGGAGTCCGGATCCCCATCACGATTGTCCAGAAA
GTCGAGGGCACGTCTGTACAGGTGAATGGCGGTTGTGAACTCCGAGCGTT
TGTAAAAGAAATTGGCACGTTCTTTCTTGCGCGTACCATATTTGCGCAGT
ATTTCAAAGCTCTTAAGGTCCGCAAATTCTTCGTATTTGATATCCAGAAG
CTCTATTTCGTAGGTAAGGTGCGCATCGGGTGGTACCAGGTACTCGGATT
CACCCTCTTTTTTCAGTCCTAGGGAGCCGTAGCCGAAGCGGGATCCACGC
TGACTTGGGACACTTCGCCGACCTGCAGCATGGGCAACACCATATCTAAT
CCTTGGATACCTCGTAGTCTCCCACG
BS08591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-PA | 1194 | CG5482-RA | 418..1194 | 793..17 | 3885 | 100 | Minus |
CG5482-PA | 1194 | CG5482-RA | 351..417 | 859..793 | 335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-RD | 1780 | CG5482-RD | 635..1496 | 876..17 | 4260 | 99.8 | Minus |
CG5482-RC | 1958 | CG5482-RC | 492..1353 | 876..17 | 4260 | 99.8 | Minus |
CG5482-RB | 1642 | CG5482-RB | 497..1358 | 876..17 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18630629..18630939 | 326..636 | 1555 | 100 | Plus |
2R | 25286936 | 2R | 18630334..18630568 | 91..325 | 1160 | 99.6 | Plus |
2R | 25286936 | 2R | 18631133..18631292 | 719..876 | 700 | 98.8 | Plus |
2R | 25286936 | 2R | 18630996..18631078 | 636..718 | 415 | 100 | Plus |
2R | 25286936 | 2R | 18630199..18630278 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:33:14 has no hits.
BS08591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:45 Download gff for
BS08591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-PA | 333..1194 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:42 Download gff for
BS08591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-PA | 333..1194 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:35 Download gff for
BS08591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RA | 492..1353 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:06 Download gff for
BS08591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RB | 497..1358 | 17..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:06 Download gff for
BS08591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18630199..18630276 | 17..94 | 100 | <- | Plus |
2R | 18630338..18630568 | 95..325 | 100 | <- | Plus |
2R | 18630629..18630938 | 326..635 | 100 | <- | Plus |
2R | 18630996..18631078 | 636..718 | 100 | <- | Plus |
2R | 18631133..18631292 | 719..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:35 Download gff for
BS08591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14517704..14517781 | 17..94 | 100 | <- | Plus |
arm_2R | 14517843..14518073 | 95..325 | 100 | <- | Plus |
arm_2R | 14518134..14518443 | 326..635 | 100 | <- | Plus |
arm_2R | 14518501..14518583 | 636..718 | 100 | <- | Plus |
arm_2R | 14518638..14518797 | 719..876 | 98 | | Plus |
BS08591.5prime Sequence
858 bp (801 high quality bases) assembled on 2006-01-10
> BS08591.5prime
GAAGTTATCAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCG
AGGACCTGACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCG
GAGGAGGCAGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGA
CGGACAGAAGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGG
GTAACAAGCAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCG
TTTAGGCGTCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAA
ACTGGACAACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACG
TGGGAGACTACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTG
CAGGTCGGCGAAGTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGCTACGG
CTCCCTAGGACTGAAAAAAGAGGGTGAATCCGAGTACCTGGTACCACCCG
ATGCGCACCTTACCTACGAAATAGAGCTTCTGGATATCAAATACGAAGAA
TTTGCGGACCTTAAGAGCTTTGAAATACTGCGCAAATATGGTACGCGCAA
GAAAGAACGTGCCAATTTCTTTTACAAACGCTCGGAGTTCACAACCGCCA
TTCACCTGTACAGACGTGCCCTCGACTTTCTGGACAATCGTGATGGGGAT
CCGGACTCCGAGTTCGACAAGGAAGACTTGGAGCTCTCGAACAGTGACAC
GCAGACCCTGCTAGAGGATCGGTTGATCGTTTACAATAACTTGGCAATGA
CTCAAATCAAGATTGCCGCTTATGACGCAGCTCTGCAGTCCGTGGAGCAT
GTGCTGCG
BS08591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-PA | 1194 | CG5482-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-RD | 1780 | CG5482-RD | 303..1144 | 17..858 | 4210 | 100 | Plus |
CG5482-RC | 1958 | CG5482-RC | 160..1001 | 17..858 | 4210 | 100 | Plus |
CG5482-RB | 1642 | CG5482-RB | 165..1006 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18631133..18631624 | 508..17 | 2460 | 100 | Minus |
2R | 25286936 | 2R | 18630672..18630939 | 858..591 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 18630996..18631078 | 591..509 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:43:23 has no hits.
BS08591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:46 Download gff for
BS08591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:43 Download gff for
BS08591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:20:34 Download gff for
BS08591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RA | 154..1001 | 11..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:50 Download gff for
BS08591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RB | 159..1006 | 11..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:50 Download gff for
BS08591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18630672..18630938 | 592..858 | 100 | <- | Minus |
2R | 18630996..18631078 | 509..591 | 100 | <- | Minus |
2R | 18631133..18631630 | 11..508 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:20:34 Download gff for
BS08591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14518177..14518443 | 592..858 | 100 | <- | Minus |
arm_2R | 14518501..14518583 | 509..591 | 100 | <- | Minus |
arm_2R | 14518638..14519135 | 11..508 | 99 | | Minus |
BS08591.complete Sequence
1226 bp (1226 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636203
> BS08591.complete
GAAGTTATCAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCG
AGGACCTGACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCG
GAGGAGGCAGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGA
CGGACAGAAGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGG
GTAACAAGCAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCG
TTTAGGCGTCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAA
ACTGGACAACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACG
TGGGAGACTACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTG
CAGGTCGGCGAAGTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGCTACGG
CTCCCTAGGACTGAAAAAAGAGGGTGAATCCGAGTACCTGGTACCACCCG
ATGCGCACCTTACCTACGAAATAGAGCTTCTGGATATCAAATACGAAGAA
TTTGCGGACCTTAAGAGCTTTGAAATACTGCGCAAATATGGTACGCGCAA
GAAAGAACGTGCCAATTTCTTTTACAAACGCTCGGAGTTCACAACCGCCA
TTCACCTGTACAGACGTGCCCTCGACTTTCTGGACAATCGTGATGGGGAT
CCGGACTCCGAGTTCGACAAGGAAGACTTGGAGCTCTCGAACAGTGACAC
GCAGACCCTGCTAGAGGATCGGTTGATCGTTTACAATAACTTGGCAATGA
CTCAAATCAAGATTGCCGCTTATGACGCAGCTCTGCAGTCCGTGGAGCAT
GTGCTGCGGTGCCAGCCAAATAACTCCAAAGCCTTGTATCGCAAAGGAAG
AATATTGGAGGGCAAAGCGGACACCCAGGGTGCTATTAAGCTACTGCAAA
AAGTGGCTACTCTCGAACCCGAAAATCGAGCCGTTCAATCGGATTTGGCC
AGACTTTTCATCAAGGCTCGTCGTGAGGAGCACAACGAAAAGGAGATGTA
TCAAAAGATGCTGGGCCAGGCCAAAAAAATGGAGCAGAATACTGCCACCA
GGCAAAAGCAGCCGCTTGTCGACAATTCCAAGCTGAAGCTGCTTGGCTAT
CTAATGGGTACGATATTAATTGGAGTGGCTGGCGTCGCTATTTATCGTTA
CAAGTACTAAAAGCTTTCTAGACCAT
BS08591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-RD | 1194 | CG5482-PD | 1..1194 | 17..1210 | 5970 | 100 | Plus |
CG5482-RC | 1194 | CG5482-PC | 1..1194 | 17..1210 | 5970 | 100 | Plus |
CG5482-RB | 1194 | CG5482-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-RD | 1780 | CG5482-RD | 303..1496 | 17..1210 | 5970 | 100 | Plus |
CG5482-RC | 1958 | CG5482-RC | 160..1353 | 17..1210 | 5970 | 100 | Plus |
CG5482-RB | 1642 | CG5482-RB | 165..1358 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18631133..18631624 | 508..17 | 2460 | 100 | Minus |
2R | 25286936 | 2R | 18630629..18630939 | 901..591 | 1555 | 100 | Minus |
2R | 25286936 | 2R | 18630334..18630568 | 1136..902 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 18630996..18631078 | 591..509 | 415 | 100 | Minus |
2R | 25286936 | 2R | 18630199..18630278 | 1210..1131 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:05:23 has no hits.
BS08591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:39 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RA | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:26 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RA | 150..1349 | 11..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:37 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RA | 160..1351 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:39 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RA | 150..1349 | 11..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:14 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5482-RB | 165..1356 | 17..1208 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:14 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18630201..18630276 | 1133..1208 | 100 | <- | Minus |
2R | 18630338..18630568 | 902..1132 | 100 | <- | Minus |
2R | 18630629..18630938 | 592..901 | 100 | <- | Minus |
2R | 18630996..18631078 | 509..591 | 100 | <- | Minus |
2R | 18631133..18631624 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:37 Download gff for
BS08591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14517706..14517781 | 1133..1208 | 100 | <- | Minus |
arm_2R | 14517843..14518073 | 902..1132 | 100 | <- | Minus |
arm_2R | 14518134..14518443 | 592..901 | 100 | <- | Minus |
arm_2R | 14518501..14518583 | 509..591 | 100 | <- | Minus |
arm_2R | 14518638..14519129 | 17..508 | 100 | | Minus |
BS08591.pep Sequence
Translation from 16 to 1209
> BS08591.pep
MDTEKSSSSSFEDLTNAEDTKDIRKVAAEEAASGDGAPPASVSGDGQKAE
EEDAEEECDILGNKQLIKRTIKKAPQDSFRRPIRGELVTVNFTGKLDNGT
VVENELNFQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLK
KEGESEYLVPPDAHLTYEIELLDIKYEEFADLKSFEILRKYGTRKKERAN
FFYKRSEFTTAIHLYRRALDFLDNRDGDPDSEFDKEDLELSNSDTQTLLE
DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGK
ADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEMYQKMLG
QAKKMEQNTATRQKQPLVDNSKLKLLGYLMGTILIGVAGVAIYRYKY*
BS08591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5482-PD | 397 | CG5482-PD | 1..397 | 1..397 | 2013 | 100 | Plus |
CG5482-PC | 397 | CG5482-PC | 1..397 | 1..397 | 2013 | 100 | Plus |
CG5482-PB | 397 | CG5482-PB | 1..397 | 1..397 | 2013 | 100 | Plus |
CG5482-PA | 397 | CG5482-PA | 1..397 | 1..397 | 2013 | 100 | Plus |
FKBP59-PB | 439 | CG4535-PB | 132..403 | 67..359 | 239 | 25.1 | Plus |