Clone Sequence Records
BS08593.3prime Sequence
920 bp (866 high quality bases) assembled on 2006-01-10
> BS08593.3prime
ATGGTCTAGAAAGCTTTCACTCCTCGCCGTAGAAAATGCGGTTTTTGGCG
GAAGAGCGCTTCGAGGAGCGTTCAATACGATTGTGCAGATTTGTCCTGGG
ATAGCATTCATCGACGAGGCGCTCGGTCTTCTTGGGCGATTCGCGCAGCT
CCTTAACGTCCACGTTCTCCTGGGTTGCTTGTTTCCGCATAAACTTTTCG
ATAAGCGCATCGCACGCCAGATTCTTACTCGGCTCCCAGGAATCATCCTT
CGGTCCATACTTCTTCCATCGGATCTTAAACATGTCGCCCTCCTTGGTGG
CAACGTGATCAAGAATTTTTTCGACTTCCCATTGCTTTTCTGGGTCGATT
GAATCGTCGGCTTTCTTGGTGCCGGCGTTCCGTCGACCACGTCCCTTAGC
CTTCTTAGCGTTTGGCGAGGACTTCGATTTAGCTGCAACCTTCTGGGGTT
GAGCTGATTTCTCATCCTCTGTTCCAGCATCGACATCGGATTCCGAATCC
TTTTCAGCAACCTTCTTGCCATTTTTGACGGAAGAAGTCGAAGCCCTGCT
CAGCTTGCGCTTCTTGATCGGACTTGATGCATGTGCAGAGGCTTTGGAGG
TGGAGGGCAGTTCATTGCTATCTTCCGTTTCACCGCGCACGGATCGCCGT
GTCTGGCGTTTGATATTTGGCTTCCTTGGCGAACTGTCGGCACTAGGGTC
TACATCGGAATGATTAGCATCATCATCCGAATCCTCTATAACGATTTTTT
TGCCATTTTTGCGGGGCGAAGTGGTGGCGTTCCTGGCCTTGCCCACCTTG
CGCTTGTTCCTTGCAGCTGGTACATCCACGTTGGAGGTAGAGGTCTGGCA
ATCGCTGTCTTCGCTGTCAGAGGCCACAGTCAGTTTGGCCTTTCGTTTGT
TCGGGGTCTTCCTGGACGAT
BS08593.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-PA | 1011 | CG8289-RA | 108..1011 | 920..17 | 4495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1770 | CG8289-RA | 226..1129 | 920..17 | 4505 | 99.9 | Minus |
CG8289-RB | 1767 | CG8289-RB | 226..1126 | 920..17 | 4450 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17635342..17635819 | 443..920 | 2375 | 99.8 | Plus |
X | 23542271 | X | 17634574..17634980 | 39..445 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 9788850..9789058 | 406..196 | 505 | 84.8 | Minus |
2L | 23513712 | 2L | 9789791..9789906 | 443..558 | 295 | 83.6 | Plus |
2L | 23513712 | 2L | 9789914..9790013 | 687..787 | 275 | 87.1 | Plus |
2L | 23513712 | 2L | 9789143..9789206 | 761..698 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:13:52 has no hits.
BS08593.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:47 Download gff for
BS08593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 108..1011 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:45 Download gff for
BS08593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 108..1011 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:50 Download gff for
BS08593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 226..1129 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:13 Download gff for
BS08593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 226..1129 | 17..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:13 Download gff for
BS08593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17634332..17634353 | 17..38 | 100 | <- | Plus |
X | 17634574..17634977 | 39..442 | 100 | <- | Plus |
X | 17635342..17635819 | 443..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:50 Download gff for
BS08593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17528365..17528386 | 17..38 | 100 | <- | Plus |
arm_X | 17528607..17529010 | 39..442 | 100 | <- | Plus |
arm_X | 17529375..17529852 | 443..920 | 99 | | Plus |
BS08593.5prime Sequence
845 bp (842 high quality bases) assembled on 2006-01-10
> BS08593.5prime
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCG
BS08593.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-PA | 1011 | CG8289-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1770 | CG8289-RA | 119..947 | 17..845 | 4145 | 100 | Plus |
CG8289-RB | 1767 | CG8289-RB | 119..944 | 17..845 | 4090 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17635342..17635926 | 601..17 | 2925 | 100 | Minus |
X | 23542271 | X | 17634734..17634980 | 845..599 | 1235 | 100 | Minus |
2L | 23513712 | 2L | 9788850..9789055 | 638..845 | 490 | 84.6 | Plus |
2L | 23513712 | 2L | 9789791..9789906 | 601..486 | 295 | 83.6 | Minus |
2L | 23513712 | 2L | 9789914..9790013 | 357..257 | 275 | 87.1 | Minus |
2L | 23513712 | 2L | 9789143..9789206 | 283..346 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:53:46 has no hits.
BS08593.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:48 Download gff for
BS08593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:47 Download gff for
BS08593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:19:31 Download gff for
BS08593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 111..947 | 10..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:39 Download gff for
BS08593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 111..947 | 10..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:39 Download gff for
BS08593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17634734..17634977 | 602..845 | 100 | <- | Minus |
X | 17635342..17635934 | 10..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:19:31 Download gff for
BS08593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17528767..17529010 | 602..845 | 100 | <- | Minus |
arm_X | 17529375..17529967 | 10..601 | 99 | | Minus |
BS08593.complete Sequence
1043 bp (1043 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636204
> BS08593.complete
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCGAAAAG
TTTATGCGGAAACAAGCAACCCAGGAGAACGTGGACGTTAAGGAGCTGCG
CGAATCGCCCAAGAAGACCGAGCGCCTCGTCGATGAATGCTATCCCAGGA
CAAATCTGCACAATCGTATTGAACGCTCCTCGAAGCGCTCTTCCGCCAAA
AACCGCATTTTCTACGGCGAGGAGTGAAAGCTTTCTAGACCAT
BS08593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1011 | CG8289-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG8289-RB | 1008 | CG8289-PB | 1..1008 | 17..1027 | 4975 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1770 | CG8289-RA | 119..1129 | 17..1027 | 5055 | 100 | Plus |
CG8289-RB | 1767 | CG8289-RB | 119..1126 | 17..1027 | 4975 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17635342..17635926 | 601..17 | 2925 | 100 | Minus |
X | 23542271 | X | 17634574..17634980 | 1005..599 | 2035 | 100 | Minus |
2L | 23513712 | 2L | 9788850..9789058 | 638..848 | 505 | 84.8 | Plus |
2L | 23513712 | 2L | 9789791..9789906 | 601..486 | 295 | 83.6 | Minus |
2L | 23513712 | 2L | 9789914..9790013 | 357..257 | 275 | 87.1 | Minus |
2L | 23513712 | 2L | 9789143..9789206 | 283..346 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:57:35 has no hits.
BS08593.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:40 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:28 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 109..1127 | 10..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:42 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 119..1128 | 17..1026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:40 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 109..1127 | 10..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:51 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 119..1128 | 17..1026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:51 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17634333..17634353 | 1006..1026 | 100 | <- | Minus |
X | 17634574..17634977 | 602..1005 | 100 | <- | Minus |
X | 17635342..17635926 | 17..601 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:42 Download gff for
BS08593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17528366..17528386 | 1006..1026 | 100 | <- | Minus |
arm_X | 17528607..17529010 | 602..1005 | 100 | <- | Minus |
arm_X | 17529375..17529959 | 17..601 | 100 | | Minus |
BS08593.pep Sequence
Translation from 16 to 1026
> BS08593.pep
MAKASKKVAESKRRNGVANESENEEIDQQKSNGTGRSSRKTPNKRKAKLT
VASDSEDSDCQTSTSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDS
DDDANHSDVDPSADSSPRKPNIKRQTRRSVRGETEDSNELPSTSKASAHA
SSPIKKRKLSRASTSSVKNGKKVAEKDSESDVDAGTEDEKSAQPQKVAAK
SKSSPNAKKAKGRGRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMF
KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKK
TERLVDECYPRTNLHNRIERSSKRSSAKNRIFYGEE*
BS08593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-PA | 336 | CG8289-PA | 1..336 | 1..336 | 1712 | 100 | Plus |
CG8289-PB | 335 | CG8289-PB | 1..335 | 1..336 | 1695 | 99.7 | Plus |