Clone BS08593 Report

Search the DGRC for BS08593

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG8289-RA
Protein status:BS08593.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08593.3prime Sequence

920 bp (866 high quality bases) assembled on 2006-01-10

> BS08593.3prime
ATGGTCTAGAAAGCTTTCACTCCTCGCCGTAGAAAATGCGGTTTTTGGCG
GAAGAGCGCTTCGAGGAGCGTTCAATACGATTGTGCAGATTTGTCCTGGG
ATAGCATTCATCGACGAGGCGCTCGGTCTTCTTGGGCGATTCGCGCAGCT
CCTTAACGTCCACGTTCTCCTGGGTTGCTTGTTTCCGCATAAACTTTTCG
ATAAGCGCATCGCACGCCAGATTCTTACTCGGCTCCCAGGAATCATCCTT
CGGTCCATACTTCTTCCATCGGATCTTAAACATGTCGCCCTCCTTGGTGG
CAACGTGATCAAGAATTTTTTCGACTTCCCATTGCTTTTCTGGGTCGATT
GAATCGTCGGCTTTCTTGGTGCCGGCGTTCCGTCGACCACGTCCCTTAGC
CTTCTTAGCGTTTGGCGAGGACTTCGATTTAGCTGCAACCTTCTGGGGTT
GAGCTGATTTCTCATCCTCTGTTCCAGCATCGACATCGGATTCCGAATCC
TTTTCAGCAACCTTCTTGCCATTTTTGACGGAAGAAGTCGAAGCCCTGCT
CAGCTTGCGCTTCTTGATCGGACTTGATGCATGTGCAGAGGCTTTGGAGG
TGGAGGGCAGTTCATTGCTATCTTCCGTTTCACCGCGCACGGATCGCCGT
GTCTGGCGTTTGATATTTGGCTTCCTTGGCGAACTGTCGGCACTAGGGTC
TACATCGGAATGATTAGCATCATCATCCGAATCCTCTATAACGATTTTTT
TGCCATTTTTGCGGGGCGAAGTGGTGGCGTTCCTGGCCTTGCCCACCTTG
CGCTTGTTCCTTGCAGCTGGTACATCCACGTTGGAGGTAGAGGTCTGGCA
ATCGCTGTCTTCGCTGTCAGAGGCCACAGTCAGTTTGGCCTTTCGTTTGT
TCGGGGTCTTCCTGGACGAT

BS08593.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 1011 CG8289-RA 108..1011 920..17 4495 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1770 CG8289-RA 226..1129 920..17 4505 99.9 Minus
CG8289-RB 1767 CG8289-RB 226..1126 920..17 4450 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17635819 443..920 2375 99.8 Plus
X 23542271 X 17634574..17634980 39..445 2035 100 Plus
2L 23513712 2L 9788850..9789058 406..196 505 84.8 Minus
2L 23513712 2L 9789791..9789906 443..558 295 83.6 Plus
2L 23513712 2L 9789914..9790013 687..787 275 87.1 Plus
2L 23513712 2L 9789143..9789206 761..698 185 85.9 Minus
Blast to na_te.dros performed on 2015-02-10 19:13:52 has no hits.

BS08593.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:47 Download gff for BS08593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 108..1011 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:45 Download gff for BS08593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 108..1011 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:50 Download gff for BS08593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 226..1129 17..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:13 Download gff for BS08593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 226..1129 17..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:13 Download gff for BS08593.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17634332..17634353 17..38 100 <- Plus
X 17634574..17634977 39..442 100 <- Plus
X 17635342..17635819 443..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:50 Download gff for BS08593.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17528365..17528386 17..38 100 <- Plus
arm_X 17528607..17529010 39..442 100 <- Plus
arm_X 17529375..17529852 443..920 99   Plus

BS08593.5prime Sequence

845 bp (842 high quality bases) assembled on 2006-01-10

> BS08593.5prime
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCG

BS08593.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 1011 CG8289-RA 1..829 17..845 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1770 CG8289-RA 119..947 17..845 4145 100 Plus
CG8289-RB 1767 CG8289-RB 119..944 17..845 4090 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17635926 601..17 2925 100 Minus
X 23542271 X 17634734..17634980 845..599 1235 100 Minus
2L 23513712 2L 9788850..9789055 638..845 490 84.6 Plus
2L 23513712 2L 9789791..9789906 601..486 295 83.6 Minus
2L 23513712 2L 9789914..9790013 357..257 275 87.1 Minus
2L 23513712 2L 9789143..9789206 283..346 185 85.9 Plus
Blast to na_te.dros performed on 2015-02-13 02:53:46 has no hits.

BS08593.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:48 Download gff for BS08593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:47 Download gff for BS08593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:19:31 Download gff for BS08593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 111..947 10..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:39 Download gff for BS08593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 111..947 10..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:39 Download gff for BS08593.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17634734..17634977 602..845 100 <- Minus
X 17635342..17635934 10..601 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:19:31 Download gff for BS08593.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17528767..17529010 602..845 100 <- Minus
arm_X 17529375..17529967 10..601 99   Minus

BS08593.complete Sequence

1043 bp (1043 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636204

> BS08593.complete
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCGAAAAG
TTTATGCGGAAACAAGCAACCCAGGAGAACGTGGACGTTAAGGAGCTGCG
CGAATCGCCCAAGAAGACCGAGCGCCTCGTCGATGAATGCTATCCCAGGA
CAAATCTGCACAATCGTATTGAACGCTCCTCGAAGCGCTCTTCCGCCAAA
AACCGCATTTTCTACGGCGAGGAGTGAAAGCTTTCTAGACCAT

BS08593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1011 CG8289-PA 1..1011 17..1027 5055 100 Plus
CG8289-RB 1008 CG8289-PB 1..1008 17..1027 4975 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1770 CG8289-RA 119..1129 17..1027 5055 100 Plus
CG8289-RB 1767 CG8289-RB 119..1126 17..1027 4975 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17635926 601..17 2925 100 Minus
X 23542271 X 17634574..17634980 1005..599 2035 100 Minus
2L 23513712 2L 9788850..9789058 638..848 505 84.8 Plus
2L 23513712 2L 9789791..9789906 601..486 295 83.6 Minus
2L 23513712 2L 9789914..9790013 357..257 275 87.1 Minus
2L 23513712 2L 9789143..9789206 283..346 185 85.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:57:35 has no hits.

BS08593.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:40 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:28 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 109..1127 10..1027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:42 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 119..1128 17..1026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:40 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 109..1127 10..1027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:51 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 119..1128 17..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:51 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
X 17634333..17634353 1006..1026 100 <- Minus
X 17634574..17634977 602..1005 100 <- Minus
X 17635342..17635926 17..601 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:42 Download gff for BS08593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17528366..17528386 1006..1026 100 <- Minus
arm_X 17528607..17529010 602..1005 100 <- Minus
arm_X 17529375..17529959 17..601 100   Minus

BS08593.pep Sequence

Translation from 16 to 1026

> BS08593.pep
MAKASKKVAESKRRNGVANESENEEIDQQKSNGTGRSSRKTPNKRKAKLT
VASDSEDSDCQTSTSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDS
DDDANHSDVDPSADSSPRKPNIKRQTRRSVRGETEDSNELPSTSKASAHA
SSPIKKRKLSRASTSSVKNGKKVAEKDSESDVDAGTEDEKSAQPQKVAAK
SKSSPNAKKAKGRGRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMF
KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKK
TERLVDECYPRTNLHNRIERSSKRSSAKNRIFYGEE*

BS08593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 336 CG8289-PA 1..336 1..336 1712 100 Plus
CG8289-PB 335 CG8289-PB 1..335 1..336 1695 99.7 Plus