Clone BS08595 Report

Search the DGRC for BS08595

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG17985-RA
Protein status:BS08595.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08595.3prime Sequence

846 bp (845 high quality bases) assembled on 2006-01-10

> BS08595.3prime
ATGGTCTAGAAAGCTTCTACTGGGCACTATGGTTGTGATGTGGATGCTCT
GCTAGGTAGATGACGTAGACCAAGGGTATGACGACACACAAGGCGAGTAT
GAAGATCAGCAGACATATCCAAGACAAGTCGCAGTCCGATCCGGACCAGT
CGATGGCACTCAAAGAGGGTCCAGGGATGGGACGCACTAGCGGAGCGTGC
CTGTCCACCATGTGGTTAAGCAGAGCGGCATTTTCCTCGTAGGGTTGCTC
CATATTGGCTTCGTCATTCGGCGCACCCTGGGCTCCCTCGTAGAATTGTC
CAGCAGCTCTGCTCGTCGATGGTTTCTCGTGATCCACGGCGCCTGAAGCA
TTTACCGCCGCCACCAGGAGTCGCTCATCCAGCATTTGCCGCGCATCCTC
GAGGGGATTGCGTTCGGGAGCTGGTTCCCGCTCAATATTGTGTCTAGGAC
TGTTGTTCCCGCTGCGGTGGACCGCAGGAAGGGCTTCGAGGCCCCCGTTG
CCCAGCAGGACGTTGTGCACTGTAACCGGAATGCGAATAACCCGATGTGC
GTGGATTTCATTTTCGCGGTCGATCTTGTTCAGGCGCTTGATGTCCGCCA
CAGAGGAGTGAAAGCGCAGGGCCAGCGCCTGGAGTGTGTCTCCCTCTTGG
ACCTTTACCTCCAGAGTGTTCTCGTAGCGGCCGAGTCGGGCGTGGCCATT
GGGCCTCCTGGCCAGAGGGAGCAGATCTTCGAACTCGTCGTCATCGTAGG
CGGGACGGGCAAAGATGTCTTCCACGTCGTCGGGGCCGATTTCTTCCTGA
TTGTGTTGTTGTTGGCGCGCATTGCGACGCATGTCGACTGATAACT

BS08595.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-PA 816 CG17985-RA 1..816 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-RA 1479 CG17985-RA 177..992 832..17 4080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7654478..7655037 259..818 2800 100 Plus
2R 25286936 2R 7652112..7652355 17..260 1220 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:29:47 has no hits.

BS08595.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:52 Download gff for BS08595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:50 Download gff for BS08595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:46 Download gff for BS08595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 177..992 17..832 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:01 Download gff for BS08595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 177..992 17..832 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:01 Download gff for BS08595.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7652112..7652353 17..258 100 <- Plus
2R 7654478..7655037 259..818 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:46 Download gff for BS08595.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3539617..3539858 17..258 100 <- Plus
arm_2R 3541983..3542542 259..818 100 <- Plus

BS08595.5prime Sequence

846 bp (797 high quality bases) assembled on 2006-01-10

> BS08595.5prime
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGTAGAAGCTTTCTAGACC

BS08595.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-PA 816 CG17985-RA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-RA 1479 CG17985-RA 177..992 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7654478..7655037 590..31 2800 100 Minus
2R 25286936 2R 7652112..7652355 832..589 1220 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:56:29 has no hits.

BS08595.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:53 Download gff for BS08595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:52 Download gff for BS08595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:13 Download gff for BS08595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 177..992 17..832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:28 Download gff for BS08595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 177..992 17..832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:28 Download gff for BS08595.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7652112..7652353 591..832 100 <- Minus
2R 7654478..7655037 31..590 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:13 Download gff for BS08595.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3539617..3539858 591..832 100 <- Minus
arm_2R 3541983..3542542 31..590 100 <- Minus

BS08595.complete Sequence

848 bp (848 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636205

> BS08595.complete
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGTAGAAGCTTTCTAGACCAT

BS08595.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-RA 816 CG17985-PA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-RA 1479 CG17985-RA 177..992 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7654478..7655037 590..31 2800 100 Minus
2R 25286936 2R 7652112..7652355 832..589 1220 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:44:49 has no hits.

BS08595.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:41 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:29 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 186..1001 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:46 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 177..992 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:41 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 186..1001 17..832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:00 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 177..992 17..832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:00 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7652112..7652353 591..832 100 <- Minus
2R 7654478..7655037 31..590 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:46 Download gff for BS08595.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3539617..3539858 591..832 100 <- Minus
arm_2R 3541983..3542542 31..590 100 <- Minus

BS08595.pep Sequence

Translation from 16 to 831

> BS08595.pep
MRRNARQQQHNQEEIGPDDVEDIFARPAYDDDEFEDLLPLARRPNGHARL
GRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIR
IPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQM
LDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEE
NAALLNHMVDRHAPLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCV
VIPLVYVIYLAEHPHHNHSAQ*

BS08595.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-PA 271 CG17985-PA 1..271 1..271 1426 100 Plus