Clone Sequence Records
BS08595.3prime Sequence
846 bp (845 high quality bases) assembled on 2006-01-10
> BS08595.3prime
ATGGTCTAGAAAGCTTCTACTGGGCACTATGGTTGTGATGTGGATGCTCT
GCTAGGTAGATGACGTAGACCAAGGGTATGACGACACACAAGGCGAGTAT
GAAGATCAGCAGACATATCCAAGACAAGTCGCAGTCCGATCCGGACCAGT
CGATGGCACTCAAAGAGGGTCCAGGGATGGGACGCACTAGCGGAGCGTGC
CTGTCCACCATGTGGTTAAGCAGAGCGGCATTTTCCTCGTAGGGTTGCTC
CATATTGGCTTCGTCATTCGGCGCACCCTGGGCTCCCTCGTAGAATTGTC
CAGCAGCTCTGCTCGTCGATGGTTTCTCGTGATCCACGGCGCCTGAAGCA
TTTACCGCCGCCACCAGGAGTCGCTCATCCAGCATTTGCCGCGCATCCTC
GAGGGGATTGCGTTCGGGAGCTGGTTCCCGCTCAATATTGTGTCTAGGAC
TGTTGTTCCCGCTGCGGTGGACCGCAGGAAGGGCTTCGAGGCCCCCGTTG
CCCAGCAGGACGTTGTGCACTGTAACCGGAATGCGAATAACCCGATGTGC
GTGGATTTCATTTTCGCGGTCGATCTTGTTCAGGCGCTTGATGTCCGCCA
CAGAGGAGTGAAAGCGCAGGGCCAGCGCCTGGAGTGTGTCTCCCTCTTGG
ACCTTTACCTCCAGAGTGTTCTCGTAGCGGCCGAGTCGGGCGTGGCCATT
GGGCCTCCTGGCCAGAGGGAGCAGATCTTCGAACTCGTCGTCATCGTAGG
CGGGACGGGCAAAGATGTCTTCCACGTCGTCGGGGCCGATTTCTTCCTGA
TTGTGTTGTTGTTGGCGCGCATTGCGACGCATGTCGACTGATAACT
BS08595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-PA | 816 | CG17985-RA | 1..816 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-RA | 1479 | CG17985-RA | 177..992 | 832..17 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7654478..7655037 | 259..818 | 2800 | 100 | Plus |
2R | 25286936 | 2R | 7652112..7652355 | 17..260 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:29:47 has no hits.
BS08595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:52 Download gff for
BS08595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:50 Download gff for
BS08595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:46 Download gff for
BS08595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 177..992 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:01 Download gff for
BS08595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 177..992 | 17..832 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:01 Download gff for
BS08595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7652112..7652353 | 17..258 | 100 | <- | Plus |
2R | 7654478..7655037 | 259..818 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:46 Download gff for
BS08595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3539617..3539858 | 17..258 | 100 | <- | Plus |
arm_2R | 3541983..3542542 | 259..818 | 100 | <- | Plus |
BS08595.5prime Sequence
846 bp (797 high quality bases) assembled on 2006-01-10
> BS08595.5prime
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGTAGAAGCTTTCTAGACC
BS08595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-PA | 816 | CG17985-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-RA | 1479 | CG17985-RA | 177..992 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7654478..7655037 | 590..31 | 2800 | 100 | Minus |
2R | 25286936 | 2R | 7652112..7652355 | 832..589 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:56:29 has no hits.
BS08595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:53 Download gff for
BS08595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:52 Download gff for
BS08595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:13 Download gff for
BS08595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 177..992 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:28 Download gff for
BS08595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 177..992 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:28 Download gff for
BS08595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7652112..7652353 | 591..832 | 100 | <- | Minus |
2R | 7654478..7655037 | 31..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:13 Download gff for
BS08595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3539617..3539858 | 591..832 | 100 | <- | Minus |
arm_2R | 3541983..3542542 | 31..590 | 100 | <- | Minus |
BS08595.complete Sequence
848 bp (848 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636205
> BS08595.complete
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGTAGAAGCTTTCTAGACCAT
BS08595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-RA | 816 | CG17985-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-RA | 1479 | CG17985-RA | 177..992 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7654478..7655037 | 590..31 | 2800 | 100 | Minus |
2R | 25286936 | 2R | 7652112..7652355 | 832..589 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:49 has no hits.
BS08595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:41 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:29 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 186..1001 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:46 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 177..992 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:41 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 186..1001 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:00 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17985-RA | 177..992 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:00 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7652112..7652353 | 591..832 | 100 | <- | Minus |
2R | 7654478..7655037 | 31..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:46 Download gff for
BS08595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3539617..3539858 | 591..832 | 100 | <- | Minus |
arm_2R | 3541983..3542542 | 31..590 | 100 | <- | Minus |
BS08595.pep Sequence
Translation from 16 to 831
> BS08595.pep
MRRNARQQQHNQEEIGPDDVEDIFARPAYDDDEFEDLLPLARRPNGHARL
GRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIR
IPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQM
LDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEE
NAALLNHMVDRHAPLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCV
VIPLVYVIYLAEHPHHNHSAQ*
BS08595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17985-PA | 271 | CG17985-PA | 1..271 | 1..271 | 1426 | 100 | Plus |