Clone BS08601 Report

Search the DGRC for BS08601

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG4612-RA
Protein status:BS08601.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08601.3prime Sequence

864 bp (783 high quality bases) assembled on 2006-01-11

> BS08601.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAGAATATCTGGCCGGCCTTCTGCCGC
TTGCGCTCCTCCAGCTTGCGATTGATCTCCTGCTGCCGCTCGGCCTTGCT
GAGGGCTCTTGCCACGTACAAGAACTTGTTGTCGCCCAGCTGCTTGCCGT
GCAGGCCAATTACGGCGGCCAGCGCCGACTGTGGGTTCTCGTAGGCGACG
AAACCGAAACGCCGGGAGCGCCCCTCCTCGTCCAGCATGAGCTTGTGACT
GGTGATGCGGCCGTAGGGCTCGAACATCTCGCGCAAATGCTGCTCGGTGA
ACTCCTCGCTGAGGTTCTTCACATACAGATTCTTGAAGTGCGTGGCCTTC
TCCTGCTCCCGGTCCCGCCGTGGTATGAACTTGACCACATGCACCTTCTG
ATTATTGCACAGCATCCCATTCACCTTCTCGATGGCCGCTCGGGCGGCCT
CCTCCGAATCGAAATGCACAAACCCATAGCCGCGTGAATTGCCATCCTCG
TCTTTGGCCACATTGCAGTTTAGGATGTTTCCGAACACCGAGAACGTGTC
GTACACCGCCTTGTTGTCGATGGACCGCTCCAGGTTCTTGATATAGATCT
TGCCACTGTCCGGAGAGCTGTTGCCTCCGCTGCCCCCAGTGGAGCCGCTA
GCCAGAGCTCCCCCGCCGACTCCCACGCCCACATTGGCCGAGTGCGAGGA
CGTGGACGTGTGCCCGCTGCCCAGGGAGTTGTGGCCATGCCGTCCGAGAA
CAGCGGCGGCCGCCAGGTGGTTACTGGCTGCGTGCCCCCCGCCGACGTGG
CTCANGTGACCAGCTGCAGCGGCGTGGTGGTGCAGCTGCTGCTGGTGGTG
CGCCGCTGCCAGCG

BS08601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-PA 924 CG4612-RA 77..924 864..17 4196 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-RC 3922 CG4612-RC 631..1478 864..17 4214 99.8 Minus
CG4612-RA 2091 CG4612-RA 631..1478 864..17 4214 99.8 Minus
pAbp-RA 2433 CG5119-RA 477..656 592..413 225 75 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24524774..24525396 242..864 3089 99.7 Plus
2R 25286936 2R 24524318..24524544 17..243 1135 100 Plus
2R 25286936 2R 18143526..18143705 592..413 225 75 Minus
Blast to na_te.dros performed 2015-02-10 23:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2067..2131 742..676 114 65.7 Minus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1184..1248 742..676 114 65.7 Minus

BS08601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:54 Download gff for BS08601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-PA 77..924 17..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:54 Download gff for BS08601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-PA 77..924 17..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:40 Download gff for BS08601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 631..1483 11..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:47 Download gff for BS08601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 631..1483 11..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:47 Download gff for BS08601.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24524313..24524542 11..241 99 <- Plus
2R 24524774..24525396 242..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:40 Download gff for BS08601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20411836..20412065 11..241 99 <- Plus
arm_2R 20412297..20412919 242..864 99   Plus

BS08601.5prime Sequence

872 bp (822 high quality bases) assembled on 2006-01-11

> BS08601.5prime
GAAGTTATCAGTCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATC
CGGCGAACTACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCA
GCGGCGCACCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCA
CCTGAGCCACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCG
CCGCTGTTCTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACG
TCCACGTCCTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGC
TCTGGCTAGCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACA
GTGGCAAGATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCG
GTGTACGACACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGC
CAAAGACGAGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATT
CGGAGGAGGCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGC
AATAATCAGAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGA
GCAGGAGAAGGCCACGCACTTCAAGAATCTGTATGTGAAGAACCTCAGCG
AGGAGTTCACCGAGCAGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGC
ATCACCAGTCACAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTT
CGGTTTCGTCGCCTACGAGAACCCACAGTCGGCGCTGGCCGCCGTAATTG
GCCTGCACGGCAAGCAGCTGGGCGACAACAAGTTCTTGTACGTGGCAAGA
GCCCTCAGCAAGGCCGAGCGGC

BS08601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-PA 924 CG4612-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-RC 3922 CG4612-RC 555..1410 17..872 4280 100 Plus
CG4612-RA 2091 CG4612-RA 555..1410 17..872 4280 100 Plus
pAbp-RA 2433 CG5119-RA 477..656 365..544 225 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24524774..24525472 715..17 3495 100 Minus
2R 25286936 2R 24524386..24524544 872..714 795 100 Minus
2R 25286936 2R 18143526..18143705 365..544 225 75 Plus
Blast to na_te.dros performed 2015-02-11 10:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2067..2131 215..281 114 65.7 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1184..1248 215..281 114 65.7 Plus

BS08601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:55 Download gff for BS08601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:45:55 Download gff for BS08601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:15 Download gff for BS08601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 547..1410 9..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:56 Download gff for BS08601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 547..1410 9..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:56 Download gff for BS08601.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24524386..24524542 716..872 100 <- Minus
2R 24524774..24525480 9..715 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:15 Download gff for BS08601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20411909..20412065 716..872 100 <- Minus
arm_2R 20412297..20413003 9..715 99   Minus

BS08601.complete Sequence

956 bp (956 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636206

> BS08601.complete
GAAGTTATCAGTCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATC
CGGCGAACTACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCA
GCGGCGCACCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCA
CCTGAGCCACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCG
CCGCTGTTCTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACG
TCCACGTCCTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGC
TCTGGCTAGCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACA
GTGGCAAGATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCG
GTGTACGACACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGC
CAAAGACGAGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATT
CGGAGGAGGCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGC
AATAATCAGAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGA
GCAGGAGAAGGCCACGCACTTCAAGAATCTGTATGTGAAGAACCTCAGCG
AGGAGTTCACCGAGCAGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGC
ATCACCAGTCACAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTT
CGGTTTCGTCGCCTACGAGAACCCACAGTCGGCGCTGGCCGCCGTAATTG
GCCTGCACGGCAAGCAGCTGGGCGACAACAAGTTCTTGTACGTGGCAAGA
GCCCTCAGCAAGGCCGAGCGGCAGCAGGAGATCAATCGCAAGCTGGAGGA
GCGCAAGCGGCAGAAGGCCGGCCAGATATTCTACTACTAAAAGCTTTCTA
GACCAT

BS08601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-RC 924 CG4612-PC 1..924 17..940 4620 100 Plus
CG4612-RA 924 CG4612-PA 1..924 17..940 4620 100 Plus
pAbp-RA 1905 CG5119-PA 280..459 365..544 225 75 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-RC 3922 CG4612-RC 555..1478 17..940 4620 100 Plus
CG4612-RA 2091 CG4612-RA 555..1478 17..940 4620 100 Plus
pAbp-RA 2433 CG5119-RA 477..656 365..544 225 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24524774..24525472 715..17 3495 100 Minus
2R 25286936 2R 24524318..24524544 940..714 1135 100 Minus
2R 25286936 2R 18143526..18143705 365..544 225 75 Plus
Blast to na_te.dros performed 2014-11-27 02:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2067..2131 215..281 114 65.7 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1184..1248 215..281 114 65.7 Plus

BS08601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:35 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:04 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 552..1488 9..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:35 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 560..1476 22..938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:35 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 552..1488 9..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:23 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
CG4612-RA 560..1476 22..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:23 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24524320..24524542 716..938 100 <- Minus
2R 24524774..24525467 22..715 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:35 Download gff for BS08601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20411843..20412065 716..938 100 <- Minus
arm_2R 20412297..20412990 22..715 100   Minus

BS08601.pep Sequence

Translation from 16 to 939

> BS08601.pep
MFVNSMTFRGNPANYHQQQPALNHHTLAAAHHQQQLHHHAAAAGHLSHVG
GGHAASNHLAAAAVLGRHGHNSLGSGHTSTSSHSANVGVGVGGGALASGS
TGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDG
NSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKAT
HFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAY
ENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQK
AGQIFYY*

BS08601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4612-PC 307 CG4612-PC 1..307 1..307 1611 100 Plus
CG4612-PA 307 CG4612-PA 1..307 1..307 1611 100 Plus
pAbp-PA 634 CG5119-PA 90..285 113..305 628 60.2 Plus
pAbp-PB 634 CG5119-PB 90..285 113..305 628 60.2 Plus
pAbp-PC 634 CG5119-PC 90..285 113..305 628 60.2 Plus
pAbp-PA 634 CG5119-PA 185..392 115..305 328 36.8 Plus
pAbp-PB 634 CG5119-PB 185..392 115..305 328 36.8 Plus
pAbp-PA 634 CG5119-PA 4..178 115..292 206 26.8 Plus
pAbp-PB 634 CG5119-PB 4..178 115..292 206 26.8 Plus