Clone Sequence Records
BS08610.3prime Sequence
849 bp (792 high quality bases) assembled on 2006-01-11
> BS08610.3prime
ATGGTCTAGAAAGCTTTCACTGGTCACCCATGGTGTACGCCAGAAGGGCT
GCCTCATCCAGAGTCACCACTTCGGTGGCCAGTGACTGTAGGATCTTCAT
TAGGCCAAATATGGTGTGCGCGCCGAGATTCAGCCGGCGGAATTCGTATA
AAAGACGCATATAGTTAACTGTGCCCGTGCTCAAGTCCACTCCATTCAAC
ATATTCGGCAACAGATTGTAGTAATTGATCACGCAGAAGGCTCGCTGCAA
GTCCGGTCCACTGACTGTGGTCACATAGCTGGGATCCAGACGCCTTCGGC
TGAGGAACTCGCGCAGCGGTAAGCACAACTCGCGCGTCGAGTCCTCCATT
TCCTGCTTGAAGAGCTCTTGCATCATTTGGATAAGCTCCACGGAGATGAG
CGGATGCTCGGACTCCTGGCTGCGACTCAAATAGGCATCGATGAGCTTCA
TCTGCCACACATCGATGTTGTTCGGCATGGACTTGGTTACGTGATCGTAT
AGGGTTAGGTAAACCGGCAGGAAATGCATGCGATCCTTGACCACGGCATT
GTAGAATAGCAGCATCACCTGGTGCCGCTTCATCAGCTCCGGGGGACTCA
AATCCGTGCCTTTGGTGTCCAGGCAGCGACTGAGGAACTGCTTCACCATA
CGTTCGCTGGCAAACTGCTGCAGGTCGTTCATATCGATCTGCCAACAGAT
GCTCTGTTCCATCGTCAATGTTTGGGCCAGCATGCTCTTCAGCCTGTCCG
GGTCCTCCAAGTGGGAAAGGCAGCCCGTTCGCTTCTTAATATCAATCGGT
GCACTCATCTCCAGCGCCTTTTCCAGCTGATCCCAGTTGCGCGATCGCT
BS08610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9198-PA | 6093 | shtd-RA | 5261..6093 | 849..17 | 4165 | 100 | Minus |
| CG9198-PB | 1476 | shtd-RB | 644..1476 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-RA | 6481 | CG9198-RA | 5367..6199 | 849..17 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15455826..15456302 | 17..493 | 2385 | 100 | Plus |
| X | 23542271 | X | 15456362..15456717 | 494..849 | 1780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:12:02 has no hits.
BS08610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:09 Download gff for
BS08610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-PB | 644..1476 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:13 Download gff for
BS08610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9198-PB | 644..1476 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:20:48 Download gff for
BS08610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 5367..6199 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:04 Download gff for
BS08610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 5367..6199 | 17..849 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:04 Download gff for
BS08610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15455825..15456302 | 16..493 | 99 | <- | Plus |
| X | 15456362..15456717 | 494..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:20:48 Download gff for
BS08610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15349858..15350335 | 16..493 | 99 | <- | Plus |
| arm_X | 15350395..15350750 | 494..849 | 100 | | Plus |
BS08610.5prime Sequence
796 bp (795 high quality bases) assembled on 2006-01-11
> BS08610.5prime
GAAGTTATCAGTCGACATGGCTGGAGCTGCCTTCTGCATTGGTCTCAAGT
ACGCCGGCACTGAGAATCTGGTGGCCTTTGCCACGCTGCGGTCGGTGATA
AAGGATTTCCTTCGCTTCCCCAGCAGGCCGATGGGCGAATGTGCCGGTCG
CACCACTGTGGAGAGCTGCCTGATGGTGCTGCTCATCTCGATCTCGTTGG
TGTTCGCCGGCTCCGGCAACTGCGAAATTCTTCGCATAATTCGGTTTCTC
AGGTCGCGAGTGGGACCACAATATCCGCACATAACCTACGGCTCTCACAT
GGCCATACACATGTCGCTTGGCCTGCTATTCCTCGGCGCGGGTCGCTTCA
CCATTTCCCAGACACCGGAGTCGATTGCTGCACTGGTCTGCGCCTTCTTC
CCCAAGTTTCCCATACACAGCAACGACAATCGATACCATCTGCAAGCGCT
GAGACATCTCTATGTACTGGCTGTGGAACCGCGCCTGTTCCTTCCCCGGG
ACATTGACACCAATAAGCTGTGCCTGGCCAACATATCCGTGTTGGAGGTG
GGTGCCACCGAGCTGCGCCGCCTGCCCATCGCTCCCTGCATCCTGCCAGT
GCTGAGCACCCTGCAGCAGGTGGTGGTGGACGACGAGAACTATTGGCCAG
TGTGCTTCGAGCGATCGCGCAACTGGGATCAGCTGGAAAAGGCGCTGGAG
ATGAGTGCACCGATTGATATTAAGAAGCGAACGGGCTGCCTTTCCCACTT
GGAGGACCCGGACAGGCTGAAGAGCATGCTGGCCCAAACATTGACG
BS08610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9198-PA | 6093 | shtd-RA | 4617..5397 | 16..796 | 3905 | 100 | Plus |
| CG9198-PB | 1476 | shtd-RB | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-RA | 6481 | CG9198-RA | 4723..5503 | 16..796 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15457009..15457425 | 432..16 | 2085 | 100 | Minus |
| X | 23542271 | X | 15456581..15456945 | 796..432 | 1825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:19:40 has no hits.
BS08610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:10 Download gff for
BS08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-PA | 4611..5397 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:14 Download gff for
BS08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9198-PA | 4611..5397 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:15 Download gff for
BS08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4717..5503 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:20 Download gff for
BS08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4717..5503 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:20 Download gff for
BS08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15456581..15456944 | 433..796 | 100 | <- | Minus |
| X | 15457009..15457431 | 9..432 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:15 Download gff for
BS08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15350614..15350977 | 433..796 | 100 | <- | Minus |
| arm_X | 15351042..15351464 | 9..432 | 99 | | Minus |
BS08610.complete Sequence
1508 bp assembled on 2007-10-17
GenBank Submission: FJ636207
> BS08610.complete
GAAGTTATCAGTCGACATGGCTGGAGCTGCCTTCTGCATTGGTCTCAAGT
ACGCCGGCACTGAGAATCTGGTGGCCTTTGCCACGCTGCGGTCGGTGATA
AAGGATTTCCTTCGCTTCCCCAGCAGGCCGATGGGCGAATGTGCCGGTCG
CACCACTGTGGAGAGCTGCCTGATGGTGCTGCTCATCTCGATCTCGTTGG
TGTTCGCCGGCTCCGGCAACTGCGAAATTCTTCGCATAATTCGGTTTCTC
AGGTCGCGAGTGGGACCACAATATCCGCACATAACCTACGGCTCTCACAT
GGCCATACACATGTCGCTTGGCCTGCTATTCCTCGGCGCGGGTCGCTTCA
CCATTTCCCAGACACCGGAGTCGATTGCTGCACTGGTCTGCGCCTTCTTC
CCCAAGTTTCCCATACACAGCAACGACAATCGATACCATCTGCAAGCGCT
GAGACATCTCTATGTACTGGCTGTGGAACCGCGCCTGTTCCTTCCCCGGG
ACATTGACACCAATAAGCTGTGCCTGGCCAACATATCCGTGTTGGAGGTG
GGTGCCACCGAGCTGCGCCGCCTGCCCATCGCTCCCTGCATCCTGCCAGT
GCTGAGCACCCTGCAGCAGGTGGTGGTGGACGACGAGAACTATTGGCCAG
TGTGCTTCGAGCGATCGCGCAACTGGGATCAGCTGGAAAAGGCGCTGGAG
ATGAGTGCACCGATTGATATTAAGAAGCGAACGGGCTGCCTTTCCCACTT
GGAGGACCCGGACAGGCTGAAGAGCATGCTGGCCCAAACATTGACGATGG
AACAGAGCATCTGTTGGCAGATCGATATGAACGACCTGCAGCAGTTTGCC
AGCGAACGTATGGTGAAGCAGTTCCTCAGTCGCTGCCTGGACACCAAAGG
CACGGATTTGAGTCCCCCGGAGCTGATGAAGCGGCACCAGGTGATGCTGC
TATTCTACAATGCCGTGGTCAAGGATCGCATGCATTTCCTGCCGGTTTAC
CTAACCCTATACGATCACGTAACCAAGTCCATGCCGAACAACATCGATGT
GTGGCAGATGAAGCTCATCGATGCCTATTTGAGTCGCAGCCAGGAGTCCG
AGCATCCGCTCATCTCCGTGGAGCTTATCCAAATGATGCAAGAGCTCTTC
AAGCAGGAAATGGAGGACTCGACGCGCGAGTTGTGCTTACCGCTGCGCGA
GTTCCTCAGCCGAAGGCGTCTGGATCCCAGCTATGTGACCACAGTCAGTG
GACCGGACTTGCAGCGAGCCTTCTGCGTGATCAATTACTACAATCTGTTG
CCGAATATGTTGAATGGAGTGGACTTGAGCACGGGCACAGTTAACTATAT
GCGTCTTTTATACGAATTCCGCCGGCTGAATCTCGGCGCGCACACCATAT
TTGGCCTAATGAAGATCCTACAGTCACTGGCCACCGAAGTGGTGACTCTG
GATGAGGCAGCCCTTCTGGCGTACACCATGGGTGACCAGTGAAAGCTTTC
TAGACCAT
BS08610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-RA | 6093 | CG9198-PA | 4617..6093 | 16..1492 | 7385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-RA | 6481 | CG9198-RA | 4723..6199 | 16..1492 | 7385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15456362..15456945 | 1015..432 | 2920 | 100 | Minus |
| X | 23542271 | X | 15455826..15456302 | 1492..1016 | 2385 | 100 | Minus |
| X | 23542271 | X | 15457009..15457425 | 432..16 | 2085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:32:21 has no hits.
BS08610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:30 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4611..6093 | 9..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:22 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RB | 16..1498 | 9..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:34 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4724..6198 | 17..1491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:34 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RB | 23..1497 | 17..1491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:35 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4724..6198 | 17..1491 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:35 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15455827..15456302 | 1016..1491 | 100 | <- | Minus |
| X | 15456362..15456944 | 433..1015 | 100 | <- | Minus |
| X | 15457009..15457424 | 17..432 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:34 Download gff for
BS08610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15351042..15351457 | 17..432 | 100 | | Minus |
| arm_X | 15349860..15350335 | 1016..1491 | 100 | <- | Minus |
| arm_X | 15350395..15350977 | 433..1015 | 100 | <- | Minus |
BS08610.pep Sequence
Translation from 16 to 1491
> BS08610.pep
MAGAAFCIGLKYAGTENLVAFATLRSVIKDFLRFPSRPMGECAGRTTVES
CLMVLLISISLVFAGSGNCEILRIIRFLRSRVGPQYPHITYGSHMAIHMS
LGLLFLGAGRFTISQTPESIAALVCAFFPKFPIHSNDNRYHLQALRHLYV
LAVEPRLFLPRDIDTNKLCLANISVLEVGATELRRLPIAPCILPVLSTLQ
QVVVDDENYWPVCFERSRNWDQLEKALEMSAPIDIKKRTGCLSHLEDPDR
LKSMLAQTLTMEQSICWQIDMNDLQQFASERMVKQFLSRCLDTKGTDLSP
PELMKRHQVMLLFYNAVVKDRMHFLPVYLTLYDHVTKSMPNNIDVWQMKL
IDAYLSRSQESEHPLISVELIQMMQELFKQEMEDSTRELCLPLREFLSRR
RLDPSYVTTVSGPDLQRAFCVINYYNLLPNMLNGVDLSTGTVNYMRLLYE
FRRLNLGAHTIFGLMKILQSLATEVVTLDEAALLAYTMGDQ*
BS08610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-PA | 2030 | CG9198-PA | 1540..2030 | 1..491 | 2540 | 100 | Plus |
