Clone Sequence Records
BS08611.3prime Sequence
789 bp (788 high quality bases) assembled on 2006-01-11
> BS08611.3prime
ATGGTCTAGAAAGCTTTTACATGTTCTGTATGTCATGTAAGGTGGCCTCC
ATTTCCTCCTGCAGCAGTTTGTTCTTGCCCCGCACGTTGAGCAGGTCATC
TTCGAGCCTGTCGACTTCCTTCTGCAATTTCTGAACGGAGCGTTCAGCGA
ACTCAGCACGAGCCTCAGCCTCTTTCAGAGAATGATCCAATACTTTGATT
TGCGTCTCAAAGGTCTCCTCTTTTTGTGTGGCCTTCTCCTCAGAGACTTC
CAGGGACTTCAGGTTGTTGCCAACCACGCGCAGCTCCTCCTCAAGCTCCA
CAATTTTGCTTTCGCTGAGCTCGACCTTCTCCTCGGAACGCTCCAGATCC
TGTTCCATGAGCACGAGTTTTCTGGCCACCTCTTCGTATTTCTTATCAGC
TTCTTCTGCAATTAATTTTGCTTGCGCTAACTGGTTCTCCAAGAGAGCTA
CTTTGTCATCTTCCATATTTGTGCGATTCTCAAGCGCTTTTCGTATCCGT
TCGCTCTCATCGGCGGCCTGAGAGGCTTCCGACAGCTTGGCTGTGGCGGA
GCCCAGACGCTCCTCAGAGCGCTCCAAGTCTTCTTCGAGCAACTGGATGC
GACGGTTCAGAGCGGCAACCTCGGATTCGGCTTCTTCGCGGCGCACCACC
TCCAACTGCAGCCGCTTGTGGAACTCCTCGCACTCGTCTTTATACTTCTC
CATCTCCTCTTTGGTCTGGCGCATCTTCTTCTTCAGCACGTCCAAGAGAG
TGCCTTGTGGAATGCTGGTCGTCATGTCGACTGATAACT
BS08611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PA | 759 | Tm1-RA | 1..759 | 775..17 | 3795 | 100 | Minus |
| CG4898-PL | 855 | Tm1-RL | 241..855 | 631..17 | 3075 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 259..536 | 775..498 | 1390 | 100 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 241..374 | 631..498 | 670 | 100 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 241..374 | 631..498 | 670 | 100 | Minus |
| CG4898-PD | 858 | Tm1-RD | 241..374 | 631..498 | 670 | 100 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1519..1652 | 631..498 | 670 | 100 | Minus |
| CG4898-PG | 858 | Tm1-RG | 241..374 | 631..498 | 670 | 100 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 241..374 | 631..498 | 670 | 100 | Minus |
| CG4898-PI | 1326 | Tm1-RI | 844..977 | 631..498 | 670 | 100 | Minus |
| CG4898-PC | 1326 | Tm1-RC | 844..977 | 631..498 | 670 | 100 | Minus |
| CG4898-PH | 2037 | Tm1-RH | 1555..1688 | 631..498 | 670 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 726..805 | 308..229 | 400 | 100 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 564..643 | 308..229 | 400 | 100 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 564..643 | 308..229 | 400 | 100 | Minus |
| CG4898-PD | 858 | Tm1-RD | 564..643 | 308..229 | 400 | 100 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1842..1921 | 308..229 | 400 | 100 | Minus |
| CG4898-PG | 858 | Tm1-RG | 564..643 | 308..229 | 400 | 100 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 564..643 | 308..229 | 400 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 862..941 | 172..93 | 375 | 98.7 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 700..779 | 172..93 | 375 | 98.7 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 700..779 | 172..93 | 375 | 98.7 | Minus |
| CG4898-PD | 858 | Tm1-RD | 700..779 | 172..93 | 375 | 98.7 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1978..2057 | 172..93 | 375 | 98.7 | Minus |
| CG4898-PG | 858 | Tm1-RG | 700..779 | 172..93 | 375 | 98.7 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 700..773 | 172..99 | 370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1198 | 775..16 | 3800 | 100 | Minus |
| Tm1-RL | 2194 | CG4898-RL | 331..946 | 631..16 | 3080 | 100 | Minus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 775..99 | 2965 | 96 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 775..631 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 15295113..15295247 | 631..497 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 15295426..15295546 | 498..378 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 15303639..15303724 | 101..16 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 15300745..15300823 | 310..232 | 395 | 100 | Minus |
| 3R | 32079331 | 3R | 15300104..15300180 | 385..309 | 370 | 98.7 | Minus |
| 3R | 32079331 | 3R | 15303151..15303222 | 171..100 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 15301622..15301687 | 234..169 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:50:37 has no hits.
BS08611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:11 Download gff for
BS08611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:15 Download gff for
BS08611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:18 Download gff for
BS08611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1203 | 12..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:41 Download gff for
BS08611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1203 | 12..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:41 Download gff for
BS08611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 632..775 | 100 | -> | Minus |
| 3R | 15295113..15295246 | 498..631 | 100 | -> | Minus |
| 3R | 15295427..15295544 | 380..497 | 100 | -> | Minus |
| 3R | 15300110..15300180 | 309..379 | 100 | -> | Minus |
| 3R | 15300747..15300822 | 233..308 | 100 | -> | Minus |
| 3R | 15301624..15301686 | 170..232 | 100 | -> | Minus |
| 3R | 15303153..15303222 | 100..169 | 100 | -> | Minus |
| 3R | 15303641..15303729 | 12..99 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:18 Download gff for
BS08611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11126469..11126544 | 233..308 | 100 | -> | Minus |
| arm_3R | 11127346..11127408 | 170..232 | 100 | -> | Minus |
| arm_3R | 11128875..11128944 | 100..169 | 100 | -> | Minus |
| arm_3R | 11129363..11129451 | 12..99 | 97 | | Minus |
| arm_3R | 11117104..11117247 | 632..775 | 100 | -> | Minus |
| arm_3R | 11120835..11120968 | 498..631 | 100 | -> | Minus |
| arm_3R | 11121149..11121266 | 380..497 | 100 | -> | Minus |
| arm_3R | 11125832..11125902 | 309..379 | 100 | -> | Minus |
BS08611.5prime Sequence
789 bp (788 high quality bases) assembled on 2006-01-11
> BS08611.5prime
GAAGTTATCAGTCGACATGACGACCAGCATTCCACAAGGCACTCTCTTGG
ACGTGCTGAAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTAT
AAAGACGAGTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCG
CCGCGAAGAAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGT
TGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACA
GCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACG
AAAAGCGCTTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCT
TGGAGAACCAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAG
AAATACGAAGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGA
GCGTTCCGAGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTG
AGGAGGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCT
GAGGAGAAGGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGT
ATTGGATCATTCTCTGAAAGAGGCTGAGGCTCGTGCTGAGTTCGCTGAAC
GCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGATGACCTG
CTCAACGTGCGGGGCAAGAACAAACTGCTGCAGGAGGAAATGGAGGCCAC
CTTACATGACATACAGAACATGTAAAAGCTTTCTAGACC
BS08611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PA | 759 | Tm1-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
| CG4898-PL | 855 | Tm1-RL | 241..855 | 161..775 | 3075 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 259..536 | 17..294 | 1390 | 100 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PD | 858 | Tm1-RD | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1519..1652 | 161..294 | 670 | 100 | Plus |
| CG4898-PG | 858 | Tm1-RG | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PI | 1326 | Tm1-RI | 844..977 | 161..294 | 670 | 100 | Plus |
| CG4898-PC | 1326 | Tm1-RC | 844..977 | 161..294 | 670 | 100 | Plus |
| CG4898-PH | 2037 | Tm1-RH | 1555..1688 | 161..294 | 670 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 726..805 | 484..563 | 400 | 100 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PD | 858 | Tm1-RD | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1842..1921 | 484..563 | 400 | 100 | Plus |
| CG4898-PG | 858 | Tm1-RG | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 862..941 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PD | 858 | Tm1-RD | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1978..2057 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PG | 858 | Tm1-RG | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 700..773 | 620..693 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1198 | 17..776 | 3800 | 100 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..946 | 161..776 | 3080 | 100 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 17..693 | 2965 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 17..161 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 161..295 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 294..414 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15303639..15303724 | 691..776 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 482..560 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 407..483 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 621..692 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 558..623 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:19:31 has no hits.
BS08611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:12 Download gff for
BS08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:18 Download gff for
BS08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:13 Download gff for
BS08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1203 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:01 Download gff for
BS08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1203 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:01 Download gff for
BS08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 17..160 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 161..294 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 295..412 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 413..483 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 484..559 | 100 | -> | Plus |
| 3R | 15301624..15301686 | 560..622 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 623..692 | 100 | -> | Plus |
| 3R | 15303641..15303729 | 693..780 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:13 Download gff for
BS08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11117104..11117247 | 17..160 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 161..294 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 295..412 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 413..483 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 484..559 | 100 | -> | Plus |
| arm_3R | 11127346..11127408 | 560..622 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 623..692 | 100 | -> | Plus |
| arm_3R | 11129363..11129451 | 693..780 | 97 | | Plus |
BS08611.complete Sequence
791 bp (791 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636208
> BS08611.complete
GAAGTTATCAGTCGACATGACGACCAGCATTCCACAAGGCACTCTCTTGG
ACGTGCTGAAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTAT
AAAGACGAGTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCG
CCGCGAAGAAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGT
TGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACA
GCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACG
AAAAGCGCTTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCT
TGGAGAACCAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAG
AAATACGAAGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGA
GCGTTCCGAGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTG
AGGAGGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCT
GAGGAGAAGGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGT
ATTGGATCATTCTCTGAAAGAGGCTGAGGCTCGTGCTGAGTTCGCTGAAC
GCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGATGACCTG
CTCAACGTGCGGGGCAAGAACAAACTGCTGCAGGAGGAAATGGAGGCCAC
CTTACATGACATACAGAACATGTAAAAGCTTTCTAGACCAT
BS08611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 759 | CG4898-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
| Tm1-RL | 855 | CG4898-PL | 241..855 | 161..775 | 3075 | 100 | Plus |
| Tm1-RQ | 753 | CG4898-PQ | 1..677 | 17..693 | 2950 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1198 | 17..776 | 3800 | 100 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..946 | 161..776 | 3080 | 100 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 17..693 | 2950 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 17..161 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 161..295 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 294..414 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15303639..15303724 | 691..776 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 482..560 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 407..483 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 621..692 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 558..623 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:14:09 has no hits.
BS08611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:59 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:38 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 437..1193 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:34 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1195 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:59 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 437..1201 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:42 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1195 | 17..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:42 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 17..160 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 161..294 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 295..412 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 413..483 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 484..559 | 100 | -> | Plus |
| 3R | 15301624..15301686 | 560..622 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 623..692 | 100 | -> | Plus |
| 3R | 15303641..15303721 | 693..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:34 Download gff for
BS08611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11117104..11117247 | 17..160 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 161..294 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 295..412 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 413..483 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 484..559 | 100 | -> | Plus |
| arm_3R | 11127346..11127408 | 560..622 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 623..692 | 100 | -> | Plus |
| arm_3R | 11129363..11129443 | 693..773 | 100 | | Plus |
BS08611.pep Sequence
Translation from 16 to 774
> BS08611.pep
MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAE
SEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERIRKALEN
RTNMEDDKVALLENQLAQAKLIAEEADKKYEEVARKLVLMEQDLERSEEK
VELSESKIVELEEELRVVGNNLKSLEVSEEKATQKEETFETQIKVLDHSL
KEAEARAEFAERSVQKLQKEVDRLEDDLLNVRGKNKLLQEEMEATLHDIQ
NM*
BS08611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-PA | 252 | CG4898-PA | 1..252 | 1..252 | 1217 | 100 | Plus |
| Tm1-PQ | 250 | CG4898-PQ | 1..243 | 1..243 | 1056 | 90.5 | Plus |
| Tm1-PR | 250 | CG4898-PR | 1..243 | 1..243 | 1017 | 86.4 | Plus |
| Tm1-PL | 284 | CG4898-PL | 50..284 | 11..252 | 991 | 87.6 | Plus |
| Tm1-PN | 285 | CG4898-PN | 50..281 | 11..249 | 826 | 74.9 | Plus |
