Clone Sequence Records
BS08622.3prime Sequence
935 bp (810 high quality bases) assembled on 2006-01-11
> BS08622.3prime
ATGGTCTAGAAAGCTTTCATTTGATCCAGCGCAGCACCGATGTGGCCGCC
ATTCGCACGAAGGCGATGGTAGACTGCTGGTTGGCCGCCGGCATCAGATT
GGGATCCGCCAGCTCCGGCTGCGGTGTCAGGCTGGGCACCGCCTCCCAGT
CCATGCGCAGAGAGTTTTCGTCCTCTGACTCCGATTCCGTGGCGGTCTCG
ATGCCGATTAGTAGGGAGTCCACTGACTTCATGAGTGGTGCATTGTTCAC
GTCCAGATGGCCATATCGACCCAAGTCGCTGCGCTCCAGATCGAGGATGG
CTAGTAGGTTTTCCAGCGTATGCTGTTCGATGAGGGCACGCAACTTCACC
TGCTGTGTGTAGGCCAGATACATGATATTGGAGTTGAGGCGCGAGATTTT
GCGCCGGAACTGTTCCTCGTTGAGCAGCTTACGACAGAAGTCGCCATAGG
CGATCTTATGTGGCAGCCGCACGTTCAGGTAGAAGCTGAGCAACTGCGTC
AGCTGCGCCGTGTAGGTAAGAGCGCCCACAATGCGATAGGCTTCGAACCT
GCTCGGCGTAATCTCGTTGGCCGTGGCCTTGGGAACGTCGTCCTTGTTGT
CCGCCAGCCAGTCCAGGTAGGCGGTATAGTCGCCATTGGCTGGCAACGAA
GGGCCCACAATCCTGTATTGAACTTCACTGATCCCACTGCCATGAAAAAC
CCATTTGCCGCGTATGTAAGATGTATTCTTGGCATCGGCCAGCGCCGCTA
TGGTTTCCGCCTCCTCGGTGCGCTCCACACTAGCCCGCCTCTGTTGCTCC
TCCTTGAGGACCACCTCAGCTATGGGAAACACATAGGTGACCAGTTGCTG
AATGCTGCGACGCGCCGCCTGTTTTATGCTGTCCAAAAGACCCAAATGGG
TCTCCCTGAGTTTCTCTATTTTCTCCACTCGATCC
BS08622.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11877-PA | 1512 | CG11877-RA | 594..1512 | 935..17 | 4545 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 671..1589 | 935..17 | 4565 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29117133..29117896 | 935..172 | 3790 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29117958..29118113 | 172..17 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:02:23 has no hits.
BS08622.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:29 Download gff for
BS08622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 594..1512 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:40 Download gff for
BS08622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 594..1512 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:07 Download gff for
BS08622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 671..1593 | 13..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:39 Download gff for
BS08622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 671..1593 | 13..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:39 Download gff for
BS08622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29117133..29117896 | 172..935 | 99 | -> | Minus |
| 3R | 29117959..29118117 | 13..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:07 Download gff for
BS08622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942855..24943618 | 172..935 | 99 | -> | Minus |
| arm_3R | 24943681..24943839 | 13..171 | 98 | | Minus |
BS08622.5prime Sequence
899 bp (785 high quality bases) assembled on 2006-01-11
> BS08622.5prime
GAAGTTATCAGTCGACATGGCAAACAGCTCCAGCTCCGACGAAAGCTGCA
AGGCCCCCGACAACTTTCGCATCTCGAGCGCCTCCACAAACGGCGAGGAC
GAGGAATCAGATGTCGCAGGATACACAACAAAGCGCAGGCCAACGGCAGC
GACGAAGGAACTGTTGAAGGATGCGAACGCCAAGGATAGGAACGCCACCA
CGGGAATGGGTGCCCACATGCGGTGCCCACTGTGCCACAGCTGCAGCGCC
AGCCGATTCCACTGTCGCAATTGCGTCAGAAACGGAAACATTACTCACAG
CCAGGCGGAAAGGCCCGAAAGCCTGACGGAGAAGCAGCAGCGCTACATCA
ACCTGCAGGCGGGCCTCAAAACCTTCAGCACGCGCTACGAACGCCTTATC
GGGCAGCACCGCTCCAATGAAGATCGCCTGATGGCCATCAAGGCCAAGCG
AAAGCAACTGGAGCTCCTACAGCAACTAATCTCCGGCACGGGACAGAGAC
TGCGCGTCCTCGGCGAGCGACGCGATGAATTGCGTCGCGCCAATGCCGAG
AAGCGGAAGAACCTACCTAAATACCCGGACAAGGTCAAGATGCTCGAAAA
CTACGTGTTGGATCGAGTGGAGAAAATAGAGAAACTCAGGGAGACCCATC
TGGGTCTTCTGGACAGCATAAAACAGGCGGCGCGTCGCAGCATTCAGCAA
CTGGTCACCTATGTGTTTCCCATAGCTGAGGTGGTCCTCAAGGAGGAGCA
ACAGAGGCGGGCTAGTGTGGAGCGCACCGAGGAGGCGGAAACCATAGCGG
CGCTGGCCGATGCCCAGAATACATCTTACATACGCGGCAAATGGGTTTTT
CATGGCAGTGGGATCAGTGAAGTTCAATACAGGATTGGTGGGCCCTTCG
BS08622.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11877-PA | 1512 | CG11877-RA | 1..871 | 17..887 | 4330 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 78..959 | 17..899 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29116843..29117421 | 320..899 | 2835 | 99.7 | Plus |
| 3R | 32079331 | 3R | 29116468..29116772 | 17..321 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:42:34 has no hits.
BS08622.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:31 Download gff for
BS08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:41 Download gff for
BS08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:35 Download gff for
BS08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 75..959 | 11..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:47 Download gff for
BS08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 75..959 | 11..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:47 Download gff for
BS08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29116465..29116772 | 11..321 | 99 | -> | Plus |
| 3R | 29116845..29117421 | 322..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:35 Download gff for
BS08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942187..24942494 | 11..321 | 99 | -> | Plus |
| arm_3R | 24942567..24943143 | 322..899 | 99 | | Plus |
BS08622.complete Sequence
1544 bp (1544 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636209
> BS08622.complete
GAAGTTATCAGTCGACATGGCAAACAGCTCCAGCTCCGACGAAAGCTGCA
AGGCCCCCGACAACTTTCGCATCTCGAGCGCCTCCACAAACGGCGAGGAC
GAGGAATCAGATGTCGCAGGATACACAACAAAGCGCAGGCCAACGGCAGC
GACGAAGGAACTGTTGAAGGATGCGAACGCCAAGGATAGGAACGCCACCA
CGGGAATGGGTGCCCACATGCGGTGCCCACTGTGCCACAGCTGCAGCGCC
AGCCGATTCCACTGTCGCAATTGCGTCAGAAACGGAAACATTACTCACAG
CCAGGCGGAAAGGCCCGAAAGCCTGACGGAGAAGCAGCAGCGCTACATCA
ACCTGCAGGCGGGCCTCAAAACCTTCAGCACGCGCTACGAACGCCTTATC
GGGCAGCACCGCTCCAATGAAGATCGCCTGATGGCCATCAAGGCCAAGCG
AAAGCAACTGGAGCTCCTACAGCAACTAATCTCCGGCACGGGACAGAGAC
TGCGCGTCCTCGGCGAGCGACGCGATGAATTGCGTCGCGCCAATGCCGAG
AAGCGGAAGAACCTACCTAAATACCCGGACAAGGTCAAGATGCTCGAAAA
CTACGTGTTGGATCGAGTGGAGAAAATAGAGAAACTCAGGGAGACCCATC
TGGGTCTTCTGGACAGCATAAAACAGGCGGCGCGTCGCAGCATTCAGCAA
CTGGTCACCTATGTGTTTCCCATAGCTGAGGTGGTCCTCAAGGAGGAGCA
ACAGAGGCGGGCTAGTGTGGAGCGCACCGAGGAGGCGGAAACCATAGCGG
CGCTGGCCGATGCCAAGAATACATCTTACATACGCGGCAAATGGGTTTTT
CATGGCAGTGGGATCAGTGAAGTTCAATACAGGATTGTGGGCCCTTCGTT
GCCAGCCAATGGCGACTATACCGCCTACCTGGACTGGCTGGCGGACAACA
AGGACGACGTTCCCAAGGCCACGGCCAACGAGATTACGCCGAGCAGGTTC
GAAGCCTATCGCATTGTGGGCGCTCTTACCTACACGGCGCAGCTGACGCA
GTTGCTCAGCTTCTACCTGAACGTGCGGCTGCCACATAAGATCGCCTATG
GCGACTTCTGTCGTAAGCTGCTCAACGAGGAACAGTTCCGGCGCAAAATC
TCGCGCCTCAACTCCAATATCATGTATCTGGCCTACACACAGCAGGTGAA
GTTGCGTGCCCTCATCGAACAGCATACGCTGGAAAACCTACTAGCCATCC
TCGATCTGGAGCGCAGCGACTTGGGTCGATATGGCCATCTGGACGTGAAC
AATGCACCACTCATGAAGTCAGTGGACTCCCTACTAATCGGCATCGAGAC
CGCCACGGAATCGGAGTCAGAGGACGAAAACTCTCTGCGCATGGACTGGG
AGGCGGTGCCCAGCCTGACACCGCAGCCGGAGCTGGCGGATCCCAATCTG
ATGCCGGCGGCCAACCAGCAGTCTACCATCGCCTTCGTGCGAATGGCGGC
CACATCGGTGCTGCGCTGGATCAAATGAAAGCTTTCTAGACCAT
BS08622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1512 | CG11877-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 78..1589 | 17..1528 | 7560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29116843..29117896 | 320..1373 | 5270 | 100 | Plus |
| 3R | 32079331 | 3R | 29116468..29116772 | 17..321 | 1525 | 100 | Plus |
| 3R | 32079331 | 3R | 29117958..29118113 | 1373..1528 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:28:10 has no hits.
BS08622.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:19 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-RA | 1..1512 | 17..1528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:59 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-RA | 78..1596 | 11..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:12 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 78..1588 | 17..1527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:19 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-RA | 78..1596 | 11..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:24 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 78..1588 | 17..1527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:24 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29116468..29116772 | 17..321 | 100 | -> | Plus |
| 3R | 29116845..29117896 | 322..1373 | 100 | -> | Plus |
| 3R | 29117959..29118112 | 1374..1527 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:12 Download gff for
BS08622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942190..24942494 | 17..321 | 100 | -> | Plus |
| arm_3R | 24942567..24943618 | 322..1373 | 100 | -> | Plus |
| arm_3R | 24943681..24943834 | 1374..1527 | 100 | | Plus |
BS08622.pep Sequence
Translation from 16 to 1527
> BS08622.pep
MANSSSSDESCKAPDNFRISSASTNGEDEESDVAGYTTKRRPTAATKELL
KDANAKDRNATTGMGAHMRCPLCHSCSASRFHCRNCVRNGNITHSQAERP
ESLTEKQQRYINLQAGLKTFSTRYERLIGQHRSNEDRLMAIKAKRKQLEL
LQQLISGTGQRLRVLGERRDELRRANAEKRKNLPKYPDKVKMLENYVLDR
VEKIEKLRETHLGLLDSIKQAARRSIQQLVTYVFPIAEVVLKEEQQRRAS
VERTEEAETIAALADAKNTSYIRGKWVFHGSGISEVQYRIVGPSLPANGD
YTAYLDWLADNKDDVPKATANEITPSRFEAYRIVGALTYTAQLTQLLSFY
LNVRLPHKIAYGDFCRKLLNEEQFRRKISRLNSNIMYLAYTQQVKLRALI
EQHTLENLLAILDLERSDLGRYGHLDVNNAPLMKSVDSLLIGIETATESE
SEDENSLRMDWEAVPSLTPQPELADPNLMPAANQQSTIAFVRMAATSVLR
WIK*
BS08622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-PA | 503 | CG11877-PA | 1..503 | 1..503 | 2563 | 100 | Plus |
