Clone Sequence Records
BS08628.3prime Sequence
934 bp (838 high quality bases) assembled on 2006-01-11
> BS08628.3prime
ATGGTCTAGAAAGCTTTCAGCGTGGTCTCCGTGCCACGCCCCCATCCACG
CACATGTTACGATCACTGAGGCAAGAGGCGTAACCAAGGGCGTGAGGTAT
GAAATGCTGCTCGAAAACTCCGGTGAAAAGCTGGGCATACGGTCCACTAG
CAAAAACGGCCACATCATCGCCACCGTGCGTTTCCGATTCCAAGGGAACT
GTGCTGGGGAACATGAAGTCCTTGTTCTTCATATTGATGGCTCTCAGATT
TTTCCTCCGCACAGCGCCGCCTTCCCTGAGGTAGTTACTATCATAGCCCG
GTCCATTGGCATAGCTCAGAGTGGCATATGGAAGATCATCCGCCGCCAGC
TGTCCGTCATTGATGCCGAAGATATCGTTCTTTCTGCTGGAATAGCCCGC
CAGCGACATGGTGTGCGAGTGATCCGAACTGACCACTATTAAAGTGTCGT
CCGTACTCGTGTGACTCCTGGCAAATCGCACCGCTTTGTCGAACTCCGCC
GTTTCATCGATGGCCCTCAAAGCCAAGGTGTCGTGGTGACCATGATCGAT
CCGACCGCCCTCCACGAAAAGGAAGTAACCGCGTCCGGCACTCTGGCGCT
CCAAGATTTCCATGGCCGACTGGACCATCTCCTCCAGCGTTGGTTGCTCT
GCTGGACTAGCATCCAGATGGTAGGCCATGTGGTAGGGGGCAAACAAGCC
CAGTACTCGTGAAGTGTGATTGGATAGGTTGAGCAGCTCCCTGCGATTCT
CCACATATTGAGCACTGTTCGTGTGCTGGTTCTTCCACTCGTCGATGAGA
TTGCGGCCATCCAAACGGCGACCAGGCGCTCCACTGGAATCAGTCACGCC
TTTGGGCAGGAAATTCTCGCGACCTCCGCCCATTATCACATTAAGTTTCT
GACCCACCGGACTGTTTATCAGCTGGGCAGCTGC
BS08628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-PA | 1641 | CG8147-RA | 724..1641 | 934..17 | 4590 | 100 | Minus |
CG8147-PB | 1641 | CG8147-RB | 724..1641 | 934..17 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-RA | 1862 | CG8147-RA | 811..1730 | 934..15 | 4600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9495672..9496591 | 934..15 | 4600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:49:07 has no hits.
BS08628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:40 Download gff for
BS08628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-PB | 724..1641 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:55 Download gff for
BS08628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-PB | 724..1641 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:13 Download gff for
BS08628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RA | 811..1733 | 11..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:30 Download gff for
BS08628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RA | 811..1733 | 11..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:30 Download gff for
BS08628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9495672..9496594 | 11..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:13 Download gff for
BS08628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5321394..5322316 | 11..934 | 99 | | Minus |
BS08628.5prime Sequence
886 bp (851 high quality bases) assembled on 2006-01-11
> BS08628.5prime
GAAGTTATCAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGA
GTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATG
CATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGG
TCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAG
AGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGAT
CAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGT
GATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTC
GCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCG
TATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTC
CGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCA
CGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCA
CAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGG
AATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAG
CTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAA
GTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCA
GCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAG
GTCGCGAGAATTTCCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCT
GGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAG
BS08628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-PA | 1641 | CG8147-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
CG8147-PB | 1641 | CG8147-RB | 1..870 | 17..886 | 4350 | 100 | Plus |
CG1809-PA | 1548 | CG1809-RA | 361..428 | 437..504 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-RA | 1862 | CG8147-RA | 88..957 | 17..886 | 4350 | 100 | Plus |
CG3264-RB | 2182 | CG3264-RB | 414..552 | 385..523 | 260 | 80 | Plus |
CG3264-RA | 1737 | CG3264-RA | 414..552 | 385..523 | 260 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9495002..9495818 | 70..886 | 4085 | 100 | Plus |
3R | 32079331 | 3R | 9494888..9494942 | 17..71 | 275 | 100 | Plus |
2R | 25286936 | 2R | 9562517..9562606 | 415..504 | 225 | 83.3 | Plus |
2R | 25286936 | 2R | 22210152..22210258 | 523..417 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:40:34 has no hits.
BS08628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:41 Download gff for
BS08628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-PB | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:57 Download gff for
BS08628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-PB | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:20 Download gff for
BS08628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RA | 82..957 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:31 Download gff for
BS08628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RA | 82..957 | 10..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:31 Download gff for
BS08628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9494882..9494942 | 10..71 | 93 | -> | Plus |
3R | 9495004..9495818 | 72..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:20 Download gff for
BS08628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5320604..5320664 | 10..71 | 93 | -> | Plus |
arm_3R | 5320726..5321540 | 72..886 | 100 | | Plus |
BS08628.complete Sequence
1673 bp (1673 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636210
> BS08628.complete
GAAGTTATCAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGA
GTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATG
CATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGG
TCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAG
AGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGAT
CAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGT
GATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTC
GCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCG
TATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTC
CGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCA
CGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCA
CAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGG
AATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAG
CTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAA
GTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCA
GCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAG
GTCGCGAGAATTTCCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCT
GGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAGTGGAAGAACCAGCA
CACGAACAGTGCTCAATATGTGGAGAATCGCAGGGAGCTGCTCAACCTAT
CCAATCACACTTCACGAGTACTGGGCTTGTTTGCCCCCTACCACATGGCC
TACCATCTGGATGCTAGTCCAGCAGAGCAACCAACGCTGGAGGAGATGGT
CCAGTCGGCCATGGAAATCTTGGAGCGCCAGAGTGCCGGACGCGGTTACT
TCCTTTTCGTGGAGGGCGGTCGGATCGATCATGGTCACCACGACACCTTG
GCTTTGAGGGCCATCGATGAAACGGCGGAGTTCGACAAAGCGGTGCGATT
TGCCAGGAGTCACACGAGTACGGACGACACTTTAATAGTGGTCAGTTCGG
ATCACTCGCACACCATGTCGCTGGCGGGCTATTCCAGCAGAAAGAACGAT
ATCTTCGGCATCAATGACGGACAGCTGGCGGCGGATGATCTTCCATATGC
CACTCTGAGCTATGCCAATGGACCGGGCTATGATAGTAACTACCTCAGGG
AAGGCGGCGCTGTGCGGAGGAAAAATCTGAGAGCCATCAATATGAAGAAC
AAGGACTTCATGTTCCCCAGCACAGTTCCCTTGGAATCGGAAACGCACGG
TGGCGATGATGTGGCCGTTTTTGCTAGTGGACCGTATGCCCAGCTTTTCA
CCGGAGTTTTCGAGCAGCATTTCATACCTCACGCCCTTGGTTACGCCTCT
TGCCTCAGTGATCGTAACATGTGCGTGGATGGGGGCGTGGCACGGAGACC
ACGCTGAAAGCTTTCTAGACCAT
BS08628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-RA | 1641 | CG8147-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
CG3264-RB | 1602 | CG3264-PB | 372..510 | 385..523 | 260 | 79.1 | Plus |
CG3264-RA | 1602 | CG3264-PA | 372..510 | 385..523 | 260 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-RA | 1862 | CG8147-RA | 88..1730 | 17..1659 | 8215 | 100 | Plus |
CG3264-RB | 2182 | CG3264-RB | 414..552 | 385..523 | 260 | 79.1 | Plus |
CG3264-RA | 1737 | CG3264-RA | 414..552 | 385..523 | 260 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9495002..9496591 | 70..1659 | 7950 | 100 | Plus |
3R | 32079331 | 3R | 9494888..9494942 | 17..71 | 275 | 100 | Plus |
2R | 25286936 | 2R | 9562517..9562606 | 415..504 | 225 | 83.3 | Plus |
2R | 25286936 | 2R | 22210152..22210258 | 523..417 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:53:26 has no hits.
BS08628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:20 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RB | 1..1641 | 17..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:01 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RB | 66..1717 | 10..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:17 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RA | 88..1727 | 17..1656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:20 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RB | 66..1717 | 10..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:32 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8147-RA | 88..1727 | 17..1656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:32 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9494888..9494942 | 17..71 | 100 | -> | Plus |
3R | 9495004..9496588 | 72..1656 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:17 Download gff for
BS08628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5320610..5320664 | 17..71 | 100 | -> | Plus |
arm_3R | 5320726..5322310 | 72..1656 | 100 | | Plus |
BS08628.pep Sequence
Translation from 16 to 1656
> BS08628.pep
MRLQLFFFLGLSVLVSGGESSHDAERRMHPVFSLMGTGSNPIGGGRYKRA
MPQIVFDAVRSEERYAEYWQGLAAQTLDQQLESKLRLNTQLARNVMLFIG
DGMSIPTITAGRVYLGGEEKQFAFEQFPYVGLSKTYCANMQVADSACTAT
AYLGGVKANYGTIGVSAAVQFKDCQAQAQAAHHVSSIAAWAQKQGMATGL
VTTTSVTHASPAGVYAHLANRNWENDAEVVGDNGDPDLCPDAAAQLINSP
VGQKLNVIMGGGRENFLPKGVTDSSGAPGRRLDGRNLIDEWKNQHTNSAQ
YVENRRELLNLSNHTSRVLGLFAPYHMAYHLDASPAEQPTLEEMVQSAME
ILERQSAGRGYFLFVEGGRIDHGHHDTLALRAIDETAEFDKAVRFARSHT
STDDTLIVVSSDHSHTMSLAGYSSRKNDIFGINDGQLAADDLPYATLSYA
NGPGYDSNYLREGGAVRRKNLRAINMKNKDFMFPSTVPLESETHGGDDVA
VFASGPYAQLFTGVFEQHFIPHALGYASCLSDRNMCVDGGVARRPR*
BS08628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8147-PA | 546 | CG8147-PA | 1..546 | 1..546 | 2852 | 100 | Plus |
CG5656-PA | 523 | CG5656-PA | 35..506 | 61..530 | 1206 | 51.2 | Plus |
CG5656-PB | 530 | CG5656-PB | 35..513 | 61..530 | 1189 | 50.4 | Plus |
CG1809-PA | 515 | CG1809-PA | 1..509 | 1..528 | 1187 | 49.4 | Plus |
CG5150-PB | 517 | CG5150-PB | 46..511 | 61..532 | 1118 | 50 | Plus |