Clone BS08628 Report

Search the DGRC for BS08628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG8147-RA
Protein status:BS08628.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08628.3prime Sequence

934 bp (838 high quality bases) assembled on 2006-01-11

> BS08628.3prime
ATGGTCTAGAAAGCTTTCAGCGTGGTCTCCGTGCCACGCCCCCATCCACG
CACATGTTACGATCACTGAGGCAAGAGGCGTAACCAAGGGCGTGAGGTAT
GAAATGCTGCTCGAAAACTCCGGTGAAAAGCTGGGCATACGGTCCACTAG
CAAAAACGGCCACATCATCGCCACCGTGCGTTTCCGATTCCAAGGGAACT
GTGCTGGGGAACATGAAGTCCTTGTTCTTCATATTGATGGCTCTCAGATT
TTTCCTCCGCACAGCGCCGCCTTCCCTGAGGTAGTTACTATCATAGCCCG
GTCCATTGGCATAGCTCAGAGTGGCATATGGAAGATCATCCGCCGCCAGC
TGTCCGTCATTGATGCCGAAGATATCGTTCTTTCTGCTGGAATAGCCCGC
CAGCGACATGGTGTGCGAGTGATCCGAACTGACCACTATTAAAGTGTCGT
CCGTACTCGTGTGACTCCTGGCAAATCGCACCGCTTTGTCGAACTCCGCC
GTTTCATCGATGGCCCTCAAAGCCAAGGTGTCGTGGTGACCATGATCGAT
CCGACCGCCCTCCACGAAAAGGAAGTAACCGCGTCCGGCACTCTGGCGCT
CCAAGATTTCCATGGCCGACTGGACCATCTCCTCCAGCGTTGGTTGCTCT
GCTGGACTAGCATCCAGATGGTAGGCCATGTGGTAGGGGGCAAACAAGCC
CAGTACTCGTGAAGTGTGATTGGATAGGTTGAGCAGCTCCCTGCGATTCT
CCACATATTGAGCACTGTTCGTGTGCTGGTTCTTCCACTCGTCGATGAGA
TTGCGGCCATCCAAACGGCGACCAGGCGCTCCACTGGAATCAGTCACGCC
TTTGGGCAGGAAATTCTCGCGACCTCCGCCCATTATCACATTAAGTTTCT
GACCCACCGGACTGTTTATCAGCTGGGCAGCTGC

BS08628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-PA 1641 CG8147-RA 724..1641 934..17 4590 100 Minus
CG8147-PB 1641 CG8147-RB 724..1641 934..17 4590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-RA 1862 CG8147-RA 811..1730 934..15 4600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9495672..9496591 934..15 4600 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:49:07 has no hits.

BS08628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:40 Download gff for BS08628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-PB 724..1641 17..934 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:55 Download gff for BS08628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-PB 724..1641 17..934 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:13 Download gff for BS08628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 811..1733 11..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:30 Download gff for BS08628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 811..1733 11..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:30 Download gff for BS08628.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9495672..9496594 11..934 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:13 Download gff for BS08628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5321394..5322316 11..934 99   Minus

BS08628.5prime Sequence

886 bp (851 high quality bases) assembled on 2006-01-11

> BS08628.5prime
GAAGTTATCAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGA
GTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATG
CATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGG
TCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAG
AGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGAT
CAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGT
GATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTC
GCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCG
TATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTC
CGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCA
CGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCA
CAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGG
AATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAG
CTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAA
GTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCA
GCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAG
GTCGCGAGAATTTCCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCT
GGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAG

BS08628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-PA 1641 CG8147-RA 1..870 17..886 4350 100 Plus
CG8147-PB 1641 CG8147-RB 1..870 17..886 4350 100 Plus
CG1809-PA 1548 CG1809-RA 361..428 437..504 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-RA 1862 CG8147-RA 88..957 17..886 4350 100 Plus
CG3264-RB 2182 CG3264-RB 414..552 385..523 260 80 Plus
CG3264-RA 1737 CG3264-RA 414..552 385..523 260 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9495002..9495818 70..886 4085 100 Plus
3R 32079331 3R 9494888..9494942 17..71 275 100 Plus
2R 25286936 2R 9562517..9562606 415..504 225 83.3 Plus
2R 25286936 2R 22210152..22210258 523..417 220 80.4 Minus
Blast to na_te.dros performed on 2015-02-11 10:40:34 has no hits.

BS08628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:41 Download gff for BS08628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-PB 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:46:57 Download gff for BS08628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-PB 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:20 Download gff for BS08628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 82..957 10..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:31 Download gff for BS08628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 82..957 10..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:31 Download gff for BS08628.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9494882..9494942 10..71 93 -> Plus
3R 9495004..9495818 72..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:20 Download gff for BS08628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5320604..5320664 10..71 93 -> Plus
arm_3R 5320726..5321540 72..886 100   Plus

BS08628.complete Sequence

1673 bp (1673 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636210

> BS08628.complete
GAAGTTATCAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGA
GTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATG
CATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGG
TCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAG
AGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGAT
CAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGT
GATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTC
GCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCG
TATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTC
CGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCA
CGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCA
CAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGG
AATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAG
CTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAA
GTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCA
GCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAG
GTCGCGAGAATTTCCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCT
GGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAGTGGAAGAACCAGCA
CACGAACAGTGCTCAATATGTGGAGAATCGCAGGGAGCTGCTCAACCTAT
CCAATCACACTTCACGAGTACTGGGCTTGTTTGCCCCCTACCACATGGCC
TACCATCTGGATGCTAGTCCAGCAGAGCAACCAACGCTGGAGGAGATGGT
CCAGTCGGCCATGGAAATCTTGGAGCGCCAGAGTGCCGGACGCGGTTACT
TCCTTTTCGTGGAGGGCGGTCGGATCGATCATGGTCACCACGACACCTTG
GCTTTGAGGGCCATCGATGAAACGGCGGAGTTCGACAAAGCGGTGCGATT
TGCCAGGAGTCACACGAGTACGGACGACACTTTAATAGTGGTCAGTTCGG
ATCACTCGCACACCATGTCGCTGGCGGGCTATTCCAGCAGAAAGAACGAT
ATCTTCGGCATCAATGACGGACAGCTGGCGGCGGATGATCTTCCATATGC
CACTCTGAGCTATGCCAATGGACCGGGCTATGATAGTAACTACCTCAGGG
AAGGCGGCGCTGTGCGGAGGAAAAATCTGAGAGCCATCAATATGAAGAAC
AAGGACTTCATGTTCCCCAGCACAGTTCCCTTGGAATCGGAAACGCACGG
TGGCGATGATGTGGCCGTTTTTGCTAGTGGACCGTATGCCCAGCTTTTCA
CCGGAGTTTTCGAGCAGCATTTCATACCTCACGCCCTTGGTTACGCCTCT
TGCCTCAGTGATCGTAACATGTGCGTGGATGGGGGCGTGGCACGGAGACC
ACGCTGAAAGCTTTCTAGACCAT

BS08628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-RA 1641 CG8147-PA 1..1641 17..1657 8205 100 Plus
CG3264-RB 1602 CG3264-PB 372..510 385..523 260 79.1 Plus
CG3264-RA 1602 CG3264-PA 372..510 385..523 260 79.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-RA 1862 CG8147-RA 88..1730 17..1659 8215 100 Plus
CG3264-RB 2182 CG3264-RB 414..552 385..523 260 79.1 Plus
CG3264-RA 1737 CG3264-RA 414..552 385..523 260 79.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9495002..9496591 70..1659 7950 100 Plus
3R 32079331 3R 9494888..9494942 17..71 275 100 Plus
2R 25286936 2R 9562517..9562606 415..504 225 83.3 Plus
2R 25286936 2R 22210152..22210258 523..417 220 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:53:26 has no hits.

BS08628.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:20 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1641 17..1657 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:01 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 66..1717 10..1663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:17 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 88..1727 17..1656 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:20 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 66..1717 10..1663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:32 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 88..1727 17..1656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:32 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9494888..9494942 17..71 100 -> Plus
3R 9495004..9496588 72..1656 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:17 Download gff for BS08628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5320610..5320664 17..71 100 -> Plus
arm_3R 5320726..5322310 72..1656 100   Plus

BS08628.pep Sequence

Translation from 16 to 1656

> BS08628.pep
MRLQLFFFLGLSVLVSGGESSHDAERRMHPVFSLMGTGSNPIGGGRYKRA
MPQIVFDAVRSEERYAEYWQGLAAQTLDQQLESKLRLNTQLARNVMLFIG
DGMSIPTITAGRVYLGGEEKQFAFEQFPYVGLSKTYCANMQVADSACTAT
AYLGGVKANYGTIGVSAAVQFKDCQAQAQAAHHVSSIAAWAQKQGMATGL
VTTTSVTHASPAGVYAHLANRNWENDAEVVGDNGDPDLCPDAAAQLINSP
VGQKLNVIMGGGRENFLPKGVTDSSGAPGRRLDGRNLIDEWKNQHTNSAQ
YVENRRELLNLSNHTSRVLGLFAPYHMAYHLDASPAEQPTLEEMVQSAME
ILERQSAGRGYFLFVEGGRIDHGHHDTLALRAIDETAEFDKAVRFARSHT
STDDTLIVVSSDHSHTMSLAGYSSRKNDIFGINDGQLAADDLPYATLSYA
NGPGYDSNYLREGGAVRRKNLRAINMKNKDFMFPSTVPLESETHGGDDVA
VFASGPYAQLFTGVFEQHFIPHALGYASCLSDRNMCVDGGVARRPR*

BS08628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-PA 546 CG8147-PA 1..546 1..546 2852 100 Plus
CG5656-PA 523 CG5656-PA 35..506 61..530 1206 51.2 Plus
CG5656-PB 530 CG5656-PB 35..513 61..530 1189 50.4 Plus
CG1809-PA 515 CG1809-PA 1..509 1..528 1187 49.4 Plus
CG5150-PB 517 CG5150-PB 46..511 61..532 1118 50 Plus