Clone BS08630 Report

Search the DGRC for BS08630

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG2921-RA
Protein status:BS08630.pep: full length peptide match
Sequenced Size:1469

Clone Sequence Records

BS08630.3prime Sequence

898 bp (845 high quality bases) assembled on 2006-01-11

> BS08630.3prime
ATGGTCTAGAAAGCTTTTAATAGCCAAATTCACGAGCTCCGTCAACGAAC
TGAATGACCCCATAACTGCCCGAGACCATCCAGCGCGGATCCTTCACACT
CAGCGCCTGGCCAACGCCCTCGGGCAGGCCGGAGATAACTTCGCTCTTGA
CCCGCCGCAGCACACAAATGTTGCTGGGAAGGAAGCCACGGAGGCAGGTG
CTGAGTTCCTGGGTGGGGTCCCAGCAGACGTCCTGCAGCAGCTTGCGATA
GTTGAGCTCTCCCTTGAAGACCACCAGCTTGGATAGCTGCAGGGAACTAT
ACAAATCTGGATCCATTTGCGCCATGCTGTAAAACGAATGTGGTGATGTC
CAGAAATGCGAGATTGGCGCCAGTTCGAACTTTCCCTCATCGATGAATTG
TAGGAACTTCTTTCCTATCAGACTTATAATGTAGTCCGCATGCTCACTCA
AGTACTCCAGCGTCCACTTGAAGTCCCGCTCCGTCACATCGGTGACAAAC
CAAGGGTGGGCCTTCACATGGAACCGCACCTTGTCGGCCAGTCCCTTCTC
AATCATGAACTCAGCCAGTATAAAGTCGCTAAAGAGTTCGTAGCCTGCAT
TGTCCAGTATAAAGTCCACCTGCTTATGCTTCTTCAGTTTAGGGTTTTCC
AAGCACCTCCAAATCTCCGCTGCCTGGTTAACCAGTACGCGCTCATCGGT
GTTTGCCACTTTCTCCAGCACCTGGCGGTTCGATTGCTTTACTGTATCCG
TGTCGGTCGCCACATCATTGCAGTTGCTCCACATGTTGATCCTCAGAAGC
TCGTCGAACACCTCCACGCTGTTCTCTGATCGTCGTGTGTACTTGGTCAG
GGCCAGTATATCATCAATGCTATCCGTTAGCGCCTGCTCCTTGACTTT

BS08630.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 1437 CG2921-RA 556..1437 898..17 4410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1597 CG2921-RA 659..1540 898..17 4410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22073967..22074538 327..898 2860 100 Plus
2R 25286936 2R 22073595..22073907 17..329 1565 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:27:56 has no hits.

BS08630.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:44 Download gff for BS08630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 556..1437 17..898 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:01 Download gff for BS08630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 556..1437 17..898 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:15 Download gff for BS08630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 659..1544 11..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:47 Download gff for BS08630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 659..1544 11..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:47 Download gff for BS08630.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22073591..22073904 11..326 99 <- Plus
2R 22073967..22074538 327..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:15 Download gff for BS08630.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961096..17961409 11..326 99 <- Plus
arm_2R 17961472..17962043 327..898 100   Plus

BS08630.5prime Sequence

691 bp (638 high quality bases) assembled on 2006-01-11

> BS08630.5prime
GAAGTTATCCTTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAAATAACA
GCGTGGAGGTGTTCGACGAGCTTCTGATGATCAACATGTGG

BS08630.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 1437 CG2921-RA 1..675 17..691 3300 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1597 CG2921-RA 104..778 17..691 3330 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22074929..22075205 293..17 1385 100 Minus
2R 25286936 2R 22074419..22074701 691..409 1370 98.9 Minus
2R 25286936 2R 22074755..22074872 410..293 590 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:51:13 has no hits.

BS08630.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:45 Download gff for BS08630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:02 Download gff for BS08630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:54 Download gff for BS08630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 104..778 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:15 Download gff for BS08630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 104..778 17..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:15 Download gff for BS08630.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22074419..22074699 411..691 98 <- Minus
2R 22074755..22074871 294..410 100 <- Minus
2R 22074929..22075205 17..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:54 Download gff for BS08630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961924..17962204 411..691 98 <- Minus
arm_2R 17962260..17962376 294..410 100 <- Minus
arm_2R 17962434..17962710 17..293 100   Minus

BS08630.complete Sequence

1469 bp assembled on 2008-08-15

GenBank Submission: FJ636211

> BS08630.complete
GAAGTTATCCTTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACA
GCGTGGAGGTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGC
AATGATGTGGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGT
GCTGGAGAAAGTGGCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAG
CGGAGATTTGGAGGTGCTTGGAAAACCCTAAACTGAAGAAGCATAAGCAG
GTGGACTTTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTAT
ACTGGCTGAGTTCATGATTGAGAAGGGACTGGCCGACAAGGTGCGGTTCC
ATGTGAAGGCCCACCCTTGGTTTGTCACCGATGTGACGGAGCGGGACTTC
AAGTGGACGCTGGAGTACTTGAGTGAGCATGCGGACTACATTATAAGTCT
GATAGGAAAGAAGTTCCTACAATTCATCGATGAGGGAAAGTTCGAACTGG
CGCCAATCTCGCATTTCTGGACATCACCACATTCGTTTTACAGCATGGCG
CAAATGGATCCAGATTTGTATAGTTCCCTGCAGCTATCCAAGCTGGTGGT
CTTCAAGGGAGAGCTCAACTATCGCAAGCTGCTGCAGGACGTCTGCTGGG
ACCCCACCCAGGAACTCAGCACCTGCCTCCGTGGCTTCCTTCCCAGCAAC
ATTTGTGTGCTGCGGCGGGTCAAGAGCGAAGTTATCTCCGGCCTGCCCGA
GGGCGTTGGCCAGGCGCTGAGTGTGAAGGATCCGCGCTGGATGGTCTCGG
GCAGTTATGGGGTCATTCAGTTCGTTGACGGAGCTCGTGAATTTGGCTAT
TAAAAGCTTTCTAGACCAT

BS08630.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1437 CG2921-PA 1..1437 17..1453 7185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1597 CG2921-RA 104..1540 17..1453 7185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22073967..22074701 1143..409 3675 100 Minus
2R 25286936 2R 22073595..22073907 1453..1141 1565 100 Minus
2R 25286936 2R 22074929..22075205 293..17 1385 100 Minus
2R 25286936 2R 22074755..22074872 410..293 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:08:13 has no hits.

BS08630.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:07 Download gff for BS08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 133..1573 17..1459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:49 Download gff for BS08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 104..1538 17..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:04 Download gff for BS08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 133..1567 17..1451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:37 Download gff for BS08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 104..1538 17..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:37 Download gff for BS08630.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22073597..22073904 1144..1451 100 <- Minus
2R 22073967..22074699 411..1143 100 <- Minus
2R 22074755..22074871 294..410 100 <- Minus
2R 22074929..22075205 17..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:49 Download gff for BS08630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961102..17961409 1144..1451 100 <- Minus
arm_2R 17961472..17962204 411..1143 100 <- Minus
arm_2R 17962260..17962376 294..410 100 <- Minus
arm_2R 17962434..17962710 17..293 100   Minus

BS08630.pep Sequence

Translation from 16 to 1452

> BS08630.pep
MESLSKDPSSEGELPEDEGKTDSEPSKISRLLRTEFDAKYQIVNLQTPLN
AFMSGHYKQSFAFFTLRSRLPVILTNVIDTLTRDKSELVAQFASNEFSQA
AREELKIIIGLISRLKYELQTDKSFQNFTGEEPDRDVWNNFISNLPDGER
SFYKASSLHAECYLHRKLHSFLENSVFLKSYDFFAKVKEQALTDSIDDIL
ALTKYTRRSENSVEVFDELLRINMWSNCNDVATDTDTVKQSNRQVLEKVA
NTDERVLVNQAAEIWRCLENPKLKKHKQVDFILDNAGYELFSDFILAEFM
IEKGLADKVRFHVKAHPWFVTDVTERDFKWTLEYLSEHADYIISLIGKKF
LQFIDEGKFELAPISHFWTSPHSFYSMAQMDPDLYSSLQLSKLVVFKGEL
NYRKLLQDVCWDPTQELSTCLRGFLPSNICVLRRVKSEVISGLPEGVGQA
LSVKDPRWMVSGSYGVIQFVDGAREFGY*

BS08630.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 478 CG2921-PA 1..478 1..478 2482 100 Plus
CG11474-PC 436 CG11474-PC 5..433 34..469 989 42 Plus
CG11474-PA 436 CG11474-PA 5..433 34..469 989 42 Plus
CG4161-PB 484 CG4161-PB 22..449 47..474 978 44.3 Plus
CG4161-PA 484 CG4161-PA 22..449 47..474 978 44.3 Plus