Clone Sequence Records
BS08630.3prime Sequence
898 bp (845 high quality bases) assembled on 2006-01-11
> BS08630.3prime
ATGGTCTAGAAAGCTTTTAATAGCCAAATTCACGAGCTCCGTCAACGAAC
TGAATGACCCCATAACTGCCCGAGACCATCCAGCGCGGATCCTTCACACT
CAGCGCCTGGCCAACGCCCTCGGGCAGGCCGGAGATAACTTCGCTCTTGA
CCCGCCGCAGCACACAAATGTTGCTGGGAAGGAAGCCACGGAGGCAGGTG
CTGAGTTCCTGGGTGGGGTCCCAGCAGACGTCCTGCAGCAGCTTGCGATA
GTTGAGCTCTCCCTTGAAGACCACCAGCTTGGATAGCTGCAGGGAACTAT
ACAAATCTGGATCCATTTGCGCCATGCTGTAAAACGAATGTGGTGATGTC
CAGAAATGCGAGATTGGCGCCAGTTCGAACTTTCCCTCATCGATGAATTG
TAGGAACTTCTTTCCTATCAGACTTATAATGTAGTCCGCATGCTCACTCA
AGTACTCCAGCGTCCACTTGAAGTCCCGCTCCGTCACATCGGTGACAAAC
CAAGGGTGGGCCTTCACATGGAACCGCACCTTGTCGGCCAGTCCCTTCTC
AATCATGAACTCAGCCAGTATAAAGTCGCTAAAGAGTTCGTAGCCTGCAT
TGTCCAGTATAAAGTCCACCTGCTTATGCTTCTTCAGTTTAGGGTTTTCC
AAGCACCTCCAAATCTCCGCTGCCTGGTTAACCAGTACGCGCTCATCGGT
GTTTGCCACTTTCTCCAGCACCTGGCGGTTCGATTGCTTTACTGTATCCG
TGTCGGTCGCCACATCATTGCAGTTGCTCCACATGTTGATCCTCAGAAGC
TCGTCGAACACCTCCACGCTGTTCTCTGATCGTCGTGTGTACTTGGTCAG
GGCCAGTATATCATCAATGCTATCCGTTAGCGCCTGCTCCTTGACTTT
BS08630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-PA | 1437 | CG2921-RA | 556..1437 | 898..17 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1597 | CG2921-RA | 659..1540 | 898..17 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22073967..22074538 | 327..898 | 2860 | 100 | Plus |
2R | 25286936 | 2R | 22073595..22073907 | 17..329 | 1565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:27:56 has no hits.
BS08630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:44 Download gff for
BS08630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 556..1437 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:01 Download gff for
BS08630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 556..1437 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:15 Download gff for
BS08630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 659..1544 | 11..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:47 Download gff for
BS08630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 659..1544 | 11..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:47 Download gff for
BS08630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22073591..22073904 | 11..326 | 99 | <- | Plus |
2R | 22073967..22074538 | 327..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:15 Download gff for
BS08630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17961096..17961409 | 11..326 | 99 | <- | Plus |
arm_2R | 17961472..17962043 | 327..898 | 100 | | Plus |
BS08630.5prime Sequence
691 bp (638 high quality bases) assembled on 2006-01-11
> BS08630.5prime
GAAGTTATCCTTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAAATAACA
GCGTGGAGGTGTTCGACGAGCTTCTGATGATCAACATGTGG
BS08630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-PA | 1437 | CG2921-RA | 1..675 | 17..691 | 3300 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1597 | CG2921-RA | 104..778 | 17..691 | 3330 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22074929..22075205 | 293..17 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 22074419..22074701 | 691..409 | 1370 | 98.9 | Minus |
2R | 25286936 | 2R | 22074755..22074872 | 410..293 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:51:13 has no hits.
BS08630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:45 Download gff for
BS08630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:02 Download gff for
BS08630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:54 Download gff for
BS08630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 104..778 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:15 Download gff for
BS08630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 104..778 | 17..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:15 Download gff for
BS08630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22074419..22074699 | 411..691 | 98 | <- | Minus |
2R | 22074755..22074871 | 294..410 | 100 | <- | Minus |
2R | 22074929..22075205 | 17..293 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:54 Download gff for
BS08630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17961924..17962204 | 411..691 | 98 | <- | Minus |
arm_2R | 17962260..17962376 | 294..410 | 100 | <- | Minus |
arm_2R | 17962434..17962710 | 17..293 | 100 | | Minus |
BS08630.complete Sequence
1469 bp assembled on 2008-08-15
GenBank Submission: FJ636211
> BS08630.complete
GAAGTTATCCTTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACA
GCGTGGAGGTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGC
AATGATGTGGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGT
GCTGGAGAAAGTGGCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAG
CGGAGATTTGGAGGTGCTTGGAAAACCCTAAACTGAAGAAGCATAAGCAG
GTGGACTTTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTAT
ACTGGCTGAGTTCATGATTGAGAAGGGACTGGCCGACAAGGTGCGGTTCC
ATGTGAAGGCCCACCCTTGGTTTGTCACCGATGTGACGGAGCGGGACTTC
AAGTGGACGCTGGAGTACTTGAGTGAGCATGCGGACTACATTATAAGTCT
GATAGGAAAGAAGTTCCTACAATTCATCGATGAGGGAAAGTTCGAACTGG
CGCCAATCTCGCATTTCTGGACATCACCACATTCGTTTTACAGCATGGCG
CAAATGGATCCAGATTTGTATAGTTCCCTGCAGCTATCCAAGCTGGTGGT
CTTCAAGGGAGAGCTCAACTATCGCAAGCTGCTGCAGGACGTCTGCTGGG
ACCCCACCCAGGAACTCAGCACCTGCCTCCGTGGCTTCCTTCCCAGCAAC
ATTTGTGTGCTGCGGCGGGTCAAGAGCGAAGTTATCTCCGGCCTGCCCGA
GGGCGTTGGCCAGGCGCTGAGTGTGAAGGATCCGCGCTGGATGGTCTCGG
GCAGTTATGGGGTCATTCAGTTCGTTGACGGAGCTCGTGAATTTGGCTAT
TAAAAGCTTTCTAGACCAT
BS08630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1437 | CG2921-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1597 | CG2921-RA | 104..1540 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22073967..22074701 | 1143..409 | 3675 | 100 | Minus |
2R | 25286936 | 2R | 22073595..22073907 | 1453..1141 | 1565 | 100 | Minus |
2R | 25286936 | 2R | 22074929..22075205 | 293..17 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 22074755..22074872 | 410..293 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:08:13 has no hits.
BS08630.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:07 Download gff for
BS08630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 133..1573 | 17..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:49 Download gff for
BS08630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 104..1538 | 17..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:04 Download gff for
BS08630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 133..1567 | 17..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:37 Download gff for
BS08630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 104..1538 | 17..1451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:37 Download gff for
BS08630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22073597..22073904 | 1144..1451 | 100 | <- | Minus |
2R | 22073967..22074699 | 411..1143 | 100 | <- | Minus |
2R | 22074755..22074871 | 294..410 | 100 | <- | Minus |
2R | 22074929..22075205 | 17..293 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:49 Download gff for
BS08630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17961102..17961409 | 1144..1451 | 100 | <- | Minus |
arm_2R | 17961472..17962204 | 411..1143 | 100 | <- | Minus |
arm_2R | 17962260..17962376 | 294..410 | 100 | <- | Minus |
arm_2R | 17962434..17962710 | 17..293 | 100 | | Minus |
BS08630.pep Sequence
Translation from 16 to 1452
> BS08630.pep
MESLSKDPSSEGELPEDEGKTDSEPSKISRLLRTEFDAKYQIVNLQTPLN
AFMSGHYKQSFAFFTLRSRLPVILTNVIDTLTRDKSELVAQFASNEFSQA
AREELKIIIGLISRLKYELQTDKSFQNFTGEEPDRDVWNNFISNLPDGER
SFYKASSLHAECYLHRKLHSFLENSVFLKSYDFFAKVKEQALTDSIDDIL
ALTKYTRRSENSVEVFDELLRINMWSNCNDVATDTDTVKQSNRQVLEKVA
NTDERVLVNQAAEIWRCLENPKLKKHKQVDFILDNAGYELFSDFILAEFM
IEKGLADKVRFHVKAHPWFVTDVTERDFKWTLEYLSEHADYIISLIGKKF
LQFIDEGKFELAPISHFWTSPHSFYSMAQMDPDLYSSLQLSKLVVFKGEL
NYRKLLQDVCWDPTQELSTCLRGFLPSNICVLRRVKSEVISGLPEGVGQA
LSVKDPRWMVSGSYGVIQFVDGAREFGY*
BS08630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-PA | 478 | CG2921-PA | 1..478 | 1..478 | 2482 | 100 | Plus |
CG11474-PC | 436 | CG11474-PC | 5..433 | 34..469 | 989 | 42 | Plus |
CG11474-PA | 436 | CG11474-PA | 5..433 | 34..469 | 989 | 42 | Plus |
CG4161-PB | 484 | CG4161-PB | 22..449 | 47..474 | 978 | 44.3 | Plus |
CG4161-PA | 484 | CG4161-PA | 22..449 | 47..474 | 978 | 44.3 | Plus |