Clone Sequence Records
BS08632.3prime Sequence
864 bp (857 high quality bases) assembled on 2006-01-11
> BS08632.3prime
ATGGTCTAGAAAGCTTCTAGTTCTTCAGCGGAAATGGAGGCACCCAGCCG
CCAAAAGTGCGCTCCAGTTCCTCGGCAACCGCCAGGCAAAGGCGATCGTT
GTTCGGATTGGCCACCACTTGGATGCCCAGCGGCATGCCCTTGGAGTCCA
GACCCATGGGCACCTGGGTGGCCGGCAAGTGGAGCACATTGAAGAGGCTG
AAGTACGCGAAGTCATTGAACTTGACCAGAGGATAGTAGTGGAATGGTGC
AGTCCTGGGAGAACTGTGAAAGAACAGCACACCATCGTCGCCGAGCAAGT
CCTGGACGGACTTCTTGCACTTGGCCGTGGCTTCCCTCATCAGCTTCTCC
TTTTCCTTGGGCAGCACACTGTCGATCAGACCATAAATGGCCGCCATGCT
GTAGTCACTTTGCCCCAGTATCTTCTTGAAGAGCTCCACAAATGGATTGA
GCTCGGCGCCATTGCCCAACAGCAGATTGAAGTTGGCCGGTTCCTGGGTC
ATCCAATAGCGCCACATCTTTCCGGTCAGCTTGGTATAGGGCAAGTCAGC
GTGCCGCACGTCCTTTCCACTCACTGCCTCGAAATGTTTGCGAATCTTGT
ACATAACCCGTTCGGTTTCCCGGTTAATAGGATTGCACTGAGCCATGCCA
TTGGAGGACACATAGAAGTAACGCAGCCGCTTCAGATCCACCTTCTGATC
CAGTTTTAGCTTGGCTTTCAACGATGGCTCCACCAGAACCTGCATCATGG
GCAGTAGATCCCGCGCAGAACGACTCATTGGACCGGCACATACCATCGTA
TCCTTTTCCTTGCCCGTTCTGAACGTACATCCGGCCATATTGACCGCACC
GGAAGTGGGTTTGT
BS08632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-PA | 1572 | CG5112-RA | 725..1572 | 864..17 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1803 | CG5112-RA | 823..1671 | 864..16 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25492282..25493130 | 864..16 | 4245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:04:55 has no hits.
BS08632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:49 Download gff for
BS08632.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 725..1572 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:07 Download gff for
BS08632.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 725..1572 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:13 Download gff for
BS08632.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 823..1681 | 5..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:50 Download gff for
BS08632.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 823..1681 | 5..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:50 Download gff for
BS08632.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25492282..25493140 | 5..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:13 Download gff for
BS08632.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21318004..21318862 | 5..864 | 99 | | Minus |
BS08632.5prime Sequence
874 bp (800 high quality bases) assembled on 2006-01-11
> BS08632.5prime
GAAGTTATCAGTCGACATGTCATTTTGGAGCCACGTACTTGATGCCCTGC
TGGCACTGGTCCACATCCTGAGCGATCGCCTGCTGGAGTTCGTACTGGAC
TGGTATTTGGGCGAGCACAAGCGGGTATCGGGTCCACCGAGCCTGGAACA
GCAGACGACGATTACGAAGAGCGCTGTGGAGTTGGCGCAACAGATACGGG
AACGCAGGCAGCGCAGTTACGACATAGTCAAGGCCTACTGTGAGCGAATC
GAGAGCGTTAATCGGGATCTCAATGCGGTGGTCGATGGCCCGTTTCCGGA
GGCCTTGGACCAGGCACGCGAAATCGATCGCAAGTTGGACGAAAAGGAGT
ACAGCGATGAGGATCTGCGGCGCCTGCCCTTCCTAGGCGTACCCTTCTCC
ACCAAGGATAGCACCGCTGTGGCTGGGAGGCTACACACACTGGGCCTGCT
AGCAAGGAAATCGGAACGTTCGACCACGGATGCGGAATGCGTGCGCCTGA
TGAAGGAAAGTGGCGCCATTATCATCGCCACCAGCAATGTGCCGGAGGTG
AACAAGTGGATTGAGTCGAGGAACATGCTAATCGGCTGCACCAACAATCC
CTACGATCTGCGGCGTTCCGTCGGCGGTTCTTCGGGTGGTGAAGCCGCTC
TGATCGCTGCCTGCTGCACGGGTTTTGGTTTGGGAACAGACATTGGTGGT
TCCATACGCATACCGGCCTTCAATTGCGGCATCTTCGGGCACAAACCCAC
TTCCGGTGCGGTCAATATGGCCGGATGTACGTTCAGAACGGGCAAGGAAA
AGGATACGATGGTATGTGCCGGTCCAATGAGTCGTTCTGCGCGGGATCTA
CTGCCCATGATGCAGGTTCTGGTG
BS08632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-PA | 1572 | CG5112-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1803 | CG5112-RA | 98..956 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25491557..25492415 | 16..874 | 4295 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 460..522 | 606..668 | 108 | 63.5 | Plus |
BS08632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:50 Download gff for
BS08632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:08 Download gff for
BS08632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:06 Download gff for
BS08632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 93..956 | 11..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:16:21 Download gff for
BS08632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 93..956 | 11..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:16:21 Download gff for
BS08632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25491552..25492415 | 11..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:06 Download gff for
BS08632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21317274..21318137 | 11..874 | 99 | | Plus |
BS08632.complete Sequence
1604 bp (1604 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636212
> BS08632.complete
GAAGTTATCAGTCGACATGTCATTTTGGAGCCACGTACTTGATGCCCTGC
TGGCACTGGTCCACATCCTGAGCGATCGCCTGCTGGAGTTCGTACTGGAC
TGGTATTTGGGCGAGCACAAGCGGGTATCGGGTCCACCGAGCCTGGAACA
GCAGACGACGATTACGAAGAGCGCTGTGGAGTTGGCGCAACAGATACGGG
AACGCAGGCAGCGCAGTTACGACATAGTCAAGGCCTACTGTGAGCGAATC
GAGAGCGTTAATCGGGATCTCAATGCGGTGGTCGATGGCCCGTTTCCGGA
GGCCTTGGACCAGGCACGCGAAATCGATCGCAAGTTGGACGAAAAGGAGT
ACAGCGATGAGGATCTGCGGCGCCTGCCCTTCCTAGGCGTACCCTTCTCC
ACCAAGGATAGCACCGCTGTGGCTGGGAGGCTACACACACTGGGCCTGCT
AGCAAGGAAATCGGAACGTTCGACCACGGATGCGGAATGCGTGCGCCTGA
TGAAGGAAAGTGGCGCCATTATCATCGCCACCAGCAATGTGCCGGAGGTG
AACAAGTGGATTGAGTCGAGGAACATGCTAATCGGCTGCACCAACAATCC
CTACGATCTGCGGCGTTCCGTCGGCGGTTCTTCGGGTGGTGAAGCCGCTC
TGATCGCTGCCTGCTGCACGGGTTTTGGTTTGGGAACAGACATTGGTGGT
TCCATACGCATACCGGCCTTCAATTGCGGCATCTTCGGGCACAAACCCAC
TTCCGGTGCGGTCAATATGGCCGGATGTACGTTCAGAACGGGCAAGGAAA
AGGATACGATGGTATGTGCCGGTCCAATGAGTCGTTCTGCGCGGGATCTA
CTGCCCATGATGCAGGTTCTGGTGGAGCCATCGTTGAAAGCCAAGCTAAA
ACTGGATCAGAAGGTGGATCTGAAGCGGCTGCGTTACTTCTATGTGTCCT
CCAATGGCATGGCTCAGTGCAATCCTATTAACCGGGAAACCGAACGGGTT
ATGTACAAGATTCGCAAACATTTCGAGGCAGTGAGTGGAAAGGACGTGCG
GCACGCTGACTTGCCCTATACCAAGCTGACCGGAAAGATGTGGCGCTATT
GGATGACCCAGGAACCGGCCAACTTCAATCTGCTGTTGGGCAATGGCGCC
GAGCTCAATCCATTTGTGGAGCTCTTCAAGAAGATACTGGGGCAAAGTGA
CTACAGCATGGCGGCCATTTATGGTCTGATCGACAGTGTGCTGCCCAAGG
AAAAGGAGAAGCTGATGAGGGAAGCCACGGCCAAGTGCAAGAAGTCCGTC
CAGGACTTGCTCGGCGACGATGGTGTGCTGTTCTTTCACAGTTCTCCCAG
GACTGCACCATTCCACTACTATCCTCTGGTCAAGTTCAATGACTTCGCGT
ACTTCAGCCTCTTCAATGTGCTCCACTTGCCGGCCACCCAGGTGCCCATG
GGTCTGGACTCCAAGGGCATGCCGCTGGGCATCCAAGTGGTGGCCAATCC
GAACAACGATCGCCTTTGCCTGGCGGTTGCCGAGGAACTGGAGCGCACTT
TTGGCGGCTGGGTGCCTCCATTTCCGCTGAAGAACTAGAAGCTTTCTAGA
CCAT
BS08632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1572 | CG5112-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1803 | CG5112-RA | 98..1671 | 16..1589 | 7870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25491557..25493130 | 16..1589 | 7870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:27 has no hits.
BS08632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:21 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 1..1572 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:03 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 63..1651 | 11..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:26 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 99..1670 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:22 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 63..1651 | 11..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:28 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 99..1670 | 17..1588 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:28 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25491558..25493129 | 17..1588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:26 Download gff for
BS08632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21317280..21318851 | 17..1588 | 100 | | Plus |
BS08632.pep Sequence
Translation from 16 to 1587
> BS08632.pep
MSFWSHVLDALLALVHILSDRLLEFVLDWYLGEHKRVSGPPSLEQQTTIT
KSAVELAQQIRERRQRSYDIVKAYCERIESVNRDLNAVVDGPFPEALDQA
REIDRKLDEKEYSDEDLRRLPFLGVPFSTKDSTAVAGRLHTLGLLARKSE
RSTTDAECVRLMKESGAIIIATSNVPEVNKWIESRNMLIGCTNNPYDLRR
SVGGSSGGEAALIAACCTGFGLGTDIGGSIRIPAFNCGIFGHKPTSGAVN
MAGCTFRTGKEKDTMVCAGPMSRSARDLLPMMQVLVEPSLKAKLKLDQKV
DLKRLRYFYVSSNGMAQCNPINRETERVMYKIRKHFEAVSGKDVRHADLP
YTKLTGKMWRYWMTQEPANFNLLLGNGAELNPFVELFKKILGQSDYSMAA
IYGLIDSVLPKEKEKLMREATAKCKKSVQDLLGDDGVLFFHSSPRTAPFH
YYPLVKFNDFAYFSLFNVLHLPATQVPMGLDSKGMPLGIQVVANPNNDRL
CLAVAEELERTFGGWVPPFPLKN*
BS08632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-PA | 523 | CG5112-PA | 1..523 | 1..523 | 2733 | 100 | Plus |
| CG8839-PE | 529 | CG8839-PE | 23..525 | 23..518 | 873 | 40.2 | Plus |
| CG8839-PA | 529 | CG8839-PA | 23..525 | 23..518 | 873 | 40.2 | Plus |
| CG8839-PC | 529 | CG8839-PC | 23..525 | 23..518 | 873 | 40.2 | Plus |
| CG8839-PD | 529 | CG8839-PD | 23..525 | 23..518 | 873 | 40.2 | Plus |
