Clone BS08633 Report

Search the DGRC for BS08633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG8180-RA
Protein status:BS08633.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08633.3prime Sequence

914 bp (837 high quality bases) assembled on 2006-01-11

> BS08633.3prime
ATGGTCTAGAAAGCTTCTAGTTCGTTGGCTGTTCCTGTTGCTGATGTTGC
TGCGCGGAATCGCTGGGTGTTGCTCCTGCCAGCGCAGTTGCTGCTGCAGT
GGCTGCTGCGGCTGTTGCTGCTGCGGCCGCCGCTGCTGCAGCAGCTGCTG
TTGTGCTGGCCGCCGTGGCATCCAGGTTCAGTGTGGTGCTACTGGCGGCC
TTTTGGTTGGGAAAGAGCACCGAGTAGGCCGGCGGCGGATCCAGCTCTTC
ATAGTTGGGCGGCGAGGTGGCTCCCAGGTGGTCCCCGCCACCATTTCCTC
CTCCATTGGCAGCGGCCAGCGCCGCCTCCCGCTCGTTGTTGACCGCATGC
TGCGATGCGGAGGCCCAAAGGCCGCAGATGAGCAGTGCCCCACCGCACAG
GAGCATGCCGAGCATCAGGTAGCCCCACGGGCCGTACTTCGATAGGTCCG
AGTGCAGACCGGAGCGCGTTGAGTTCCTGCGGGTGAAGCCGCTGCCAGCT
CCAGTGCCCACTCCCATTTCAGTCGTATCGTTATCCGGCCTCTGCTGATC
CCCTTCCGTGAGCAGTTTGGGGTCAATTGAGATCGGTGACCCATCGCCAC
CGGCTTTCTTCATATCTTTGGTTTGCACTTTGCGCAGCGTGGTCGTCGAG
GTGGCCGTTGAATTGCCCAAACCTTCGCCTCCATCGCTCCCGTTGCGAGG
CAGATCCTCCGGTGCCGTTGGAGCATCGTTGGCGAACAGATTGCGAAACA
CTTCCAGGGCAAACTGCTCGAATAGATCCGACTCCAGGCCGGCGGCCAGC
TTACCGGCTCCCGGGCGACGCTGCTTCGAGCACAGCTCGTAGTCCTCATC
GCTGTCGTACTCGTTGCTGTACGGACAATGGCGGATCCCGTCGCAAGACA
GCTCCTTGGAGATG

BS08633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PA 1734 CG8180-RA 837..1734 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 2563 CG8180-RC 1254..2151 914..17 4490 100 Minus
CG8180-RA 2273 CG8180-RA 1254..2151 914..17 4490 100 Minus
CG8180-RB 2324 CG8180-RB 1254..1804 914..364 2755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15473177..15473727 364..914 2755 100 Plus
2R 25286936 2R 15472587..15472934 17..364 1740 100 Plus
Blast to na_te.dros performed 2015-02-10 23:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2393 114..26 169 70 Minus

BS08633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:51 Download gff for BS08633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 837..1734 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:10 Download gff for BS08633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 837..1734 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:38 Download gff for BS08633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1254..2151 17..914 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:46 Download gff for BS08633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1254..2151 17..914 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:46 Download gff for BS08633.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15472587..15472933 17..363 100 <- Plus
2R 15473177..15473727 364..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:38 Download gff for BS08633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11360092..11360438 17..363 100 <- Plus
arm_2R 11360682..11361232 364..914 100   Plus

BS08633.5prime Sequence

963 bp (871 high quality bases) assembled on 2006-01-11

> BS08633.5prime
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCAGCGTC
GCCCGGGAGCCGG

BS08633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PA 1734 CG8180-RA 1..947 17..963 4735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 2563 CG8180-RC 416..1364 15..963 4745 100 Plus
CG8180-RB 2324 CG8180-RB 416..1364 15..963 4745 100 Plus
CG8180-RA 2273 CG8180-RA 416..1364 15..963 4745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15475941..15476354 613..200 2070 100 Minus
2R 25286936 2R 15473885..15474105 834..614 1105 100 Minus
2R 25286936 2R 15482233..15482419 201..15 935 100 Minus
2R 25286936 2R 15473617..15473746 963..834 650 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:47:25 has no hits.

BS08633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:52 Download gff for BS08633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 1..947 17..963 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:11 Download gff for BS08633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 1..947 17..963 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:11 Download gff for BS08633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 412..1364 10..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:59 Download gff for BS08633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 412..1364 10..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:59 Download gff for BS08633.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15473617..15473745 835..963 100 <- Minus
2R 15473885..15474105 614..834 100 <- Minus
2R 15475941..15476353 201..613 100 <- Minus
2R 15482234..15482423 10..200 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:11 Download gff for BS08633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11361122..11361250 835..963 100 <- Minus
arm_2R 11361390..11361610 614..834 100 <- Minus
arm_2R 11363446..11363858 201..613 100 <- Minus
arm_2R 11369739..11369928 10..200 98   Minus

BS08633.complete Sequence

1766 bp assembled on 2007-10-17

GenBank Submission: FJ636213

> BS08633.complete
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCAGCGTC
GCCCGGGAGCCGGTAAGCTGGCCGCCGGCCTGGAGTCGGATCTATTCGAG
CAGTTTGCCCTGGAAGTGTTTCGCAATCTGTTCGCCAACGATGCTCCAAC
GGCACCGGAGGATCTGCCTCGCAACGGGAGCGATGGAGGCGAAGGTTTGG
GCAATTCAACGGCCACCTCGACGACCACGCTGCGCAAAGTGCAAACCAAA
GATATGAAGAAAGCCGGTGGCGATGGGTCACCGATCTCAATTGACCCCAA
ACTGCTCACGGAAGGGGATCAGCAGAGGCCGGATAACGATACGACTGAAA
TGGGAGTGGGCACTGGAGCTGGCAGCGGCTTCACCCGCAGGAACTCAACG
CGCTCCGGTCTGCACTCGGACCTATCGAAGTACGGCCCGTGGGGCTACCT
GATGCTCGGCATGCTCCTGTGCGGTGGGGCACTGCTCATCTGCGGCCTTT
GGGCCTCCGCATCGCAGCATGCGGTCAACAACGAGCGGGAGGCGGCGCTG
GCCGCTGCCAATGGAGGAGGAAATGGTGGCGGGGACCACCTGGGAGCCAC
CTCGCCGCCCAACTATGAAGAGCTGGATCCGCCGCCGGCCTACTCGGTGC
TCTTTCCCAACCAAAAGGCCGCCAGTAGCACCACACTGAACCTGGATGCC
ACGGCGGCCAGCACAACAGCAGCTGCTGCAGCAGCGGCGGCCGCAGCAGC
AACAGCCGCAGCAGCCACTGCAGCAGCAACTGCGCTGGCAGGAGCAACAC
CCAGCGATTCCGCGCAGCAACATCAGCAACAGGAACAGCCAACGAACTAG
AAGCTTTCTAGACCAT

BS08633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 1734 CG8180-PC 1..1734 17..1750 8670 100 Plus
CG8180-RA 1734 CG8180-PA 1..1734 17..1750 8670 100 Plus
CG8180-RB 1785 CG8180-PB 1..1387 17..1403 6935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 2563 CG8180-RC 416..2151 15..1750 8680 100 Plus
CG8180-RA 2273 CG8180-RA 416..2151 15..1750 8680 100 Plus
CG8180-RB 2324 CG8180-RB 416..1804 15..1403 6945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15473177..15473746 1403..834 2850 100 Minus
2R 25286936 2R 15475941..15476354 613..200 2070 100 Minus
2R 25286936 2R 15472587..15472934 1750..1403 1740 100 Minus
2R 25286936 2R 15473885..15474105 834..614 1105 100 Minus
2R 25286936 2R 15482233..15482419 201..15 935 100 Minus
Blast to na_te.dros performed 2014-11-26 15:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2393 1653..1741 169 70 Plus

BS08633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:31 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 17..1750 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:24 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 411..2150 10..1750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:19 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 418..2151 17..1750 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:19 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 417..2150 17..1750 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:30 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 418..2151 17..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:30 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15472587..15472933 1404..1750 100 <- Minus
2R 15473177..15473745 835..1403 100 <- Minus
2R 15473885..15474105 614..834 100 <- Minus
2R 15475941..15476353 201..613 100 <- Minus
2R 15482234..15482417 17..200 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:19 Download gff for BS08633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11360092..11360438 1404..1750 100 <- Minus
arm_2R 11360682..11361250 835..1403 100 <- Minus
arm_2R 11361390..11361610 614..834 100 <- Minus
arm_2R 11363446..11363858 201..613 100 <- Minus
arm_2R 11369739..11369922 17..200 100   Minus

BS08633.pep Sequence

Translation from 16 to 1749

> BS08633.pep
MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA
SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY
GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA
AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF
SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL
MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS
DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL
PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG
DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML
LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY
EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA
TAAATALAGATPSDSAQQHQQQEQPTN*

BS08633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PC 577 CG8180-PC 1..577 1..577 3013 100 Plus
CG8180-PA 577 CG8180-PA 1..577 1..577 3013 100 Plus
CG8180-PB 594 CG8180-PB 1..594 1..577 2985 97.1 Plus