Clone Sequence Records
BS08633.3prime Sequence
914 bp (837 high quality bases) assembled on 2006-01-11
> BS08633.3prime
ATGGTCTAGAAAGCTTCTAGTTCGTTGGCTGTTCCTGTTGCTGATGTTGC
TGCGCGGAATCGCTGGGTGTTGCTCCTGCCAGCGCAGTTGCTGCTGCAGT
GGCTGCTGCGGCTGTTGCTGCTGCGGCCGCCGCTGCTGCAGCAGCTGCTG
TTGTGCTGGCCGCCGTGGCATCCAGGTTCAGTGTGGTGCTACTGGCGGCC
TTTTGGTTGGGAAAGAGCACCGAGTAGGCCGGCGGCGGATCCAGCTCTTC
ATAGTTGGGCGGCGAGGTGGCTCCCAGGTGGTCCCCGCCACCATTTCCTC
CTCCATTGGCAGCGGCCAGCGCCGCCTCCCGCTCGTTGTTGACCGCATGC
TGCGATGCGGAGGCCCAAAGGCCGCAGATGAGCAGTGCCCCACCGCACAG
GAGCATGCCGAGCATCAGGTAGCCCCACGGGCCGTACTTCGATAGGTCCG
AGTGCAGACCGGAGCGCGTTGAGTTCCTGCGGGTGAAGCCGCTGCCAGCT
CCAGTGCCCACTCCCATTTCAGTCGTATCGTTATCCGGCCTCTGCTGATC
CCCTTCCGTGAGCAGTTTGGGGTCAATTGAGATCGGTGACCCATCGCCAC
CGGCTTTCTTCATATCTTTGGTTTGCACTTTGCGCAGCGTGGTCGTCGAG
GTGGCCGTTGAATTGCCCAAACCTTCGCCTCCATCGCTCCCGTTGCGAGG
CAGATCCTCCGGTGCCGTTGGAGCATCGTTGGCGAACAGATTGCGAAACA
CTTCCAGGGCAAACTGCTCGAATAGATCCGACTCCAGGCCGGCGGCCAGC
TTACCGGCTCCCGGGCGACGCTGCTTCGAGCACAGCTCGTAGTCCTCATC
GCTGTCGTACTCGTTGCTGTACGGACAATGGCGGATCCCGTCGCAAGACA
GCTCCTTGGAGATG
BS08633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-PA | 1734 | CG8180-RA | 837..1734 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 2563 | CG8180-RC | 1254..2151 | 914..17 | 4490 | 100 | Minus |
CG8180-RA | 2273 | CG8180-RA | 1254..2151 | 914..17 | 4490 | 100 | Minus |
CG8180-RB | 2324 | CG8180-RB | 1254..1804 | 914..364 | 2755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15473177..15473727 | 364..914 | 2755 | 100 | Plus |
2R | 25286936 | 2R | 15472587..15472934 | 17..364 | 1740 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2393 | 114..26 | 169 | 70 | Minus |
BS08633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:51 Download gff for
BS08633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 837..1734 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:10 Download gff for
BS08633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 837..1734 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:38 Download gff for
BS08633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 1254..2151 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:46 Download gff for
BS08633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 1254..2151 | 17..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:46 Download gff for
BS08633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15472587..15472933 | 17..363 | 100 | <- | Plus |
2R | 15473177..15473727 | 364..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:38 Download gff for
BS08633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11360092..11360438 | 17..363 | 100 | <- | Plus |
arm_2R | 11360682..11361232 | 364..914 | 100 | | Plus |
BS08633.5prime Sequence
963 bp (871 high quality bases) assembled on 2006-01-11
> BS08633.5prime
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCAGCGTC
GCCCGGGAGCCGG
BS08633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-PA | 1734 | CG8180-RA | 1..947 | 17..963 | 4735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 2563 | CG8180-RC | 416..1364 | 15..963 | 4745 | 100 | Plus |
CG8180-RB | 2324 | CG8180-RB | 416..1364 | 15..963 | 4745 | 100 | Plus |
CG8180-RA | 2273 | CG8180-RA | 416..1364 | 15..963 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15475941..15476354 | 613..200 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15473885..15474105 | 834..614 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15482233..15482419 | 201..15 | 935 | 100 | Minus |
2R | 25286936 | 2R | 15473617..15473746 | 963..834 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:47:25 has no hits.
BS08633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:52 Download gff for
BS08633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 1..947 | 17..963 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:11 Download gff for
BS08633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 1..947 | 17..963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:11 Download gff for
BS08633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 412..1364 | 10..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:59 Download gff for
BS08633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 412..1364 | 10..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:59 Download gff for
BS08633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15473617..15473745 | 835..963 | 100 | <- | Minus |
2R | 15473885..15474105 | 614..834 | 100 | <- | Minus |
2R | 15475941..15476353 | 201..613 | 100 | <- | Minus |
2R | 15482234..15482423 | 10..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:11 Download gff for
BS08633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11361122..11361250 | 835..963 | 100 | <- | Minus |
arm_2R | 11361390..11361610 | 614..834 | 100 | <- | Minus |
arm_2R | 11363446..11363858 | 201..613 | 100 | <- | Minus |
arm_2R | 11369739..11369928 | 10..200 | 98 | | Minus |
BS08633.complete Sequence
1766 bp assembled on 2007-10-17
GenBank Submission: FJ636213
> BS08633.complete
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCAGCGTC
GCCCGGGAGCCGGTAAGCTGGCCGCCGGCCTGGAGTCGGATCTATTCGAG
CAGTTTGCCCTGGAAGTGTTTCGCAATCTGTTCGCCAACGATGCTCCAAC
GGCACCGGAGGATCTGCCTCGCAACGGGAGCGATGGAGGCGAAGGTTTGG
GCAATTCAACGGCCACCTCGACGACCACGCTGCGCAAAGTGCAAACCAAA
GATATGAAGAAAGCCGGTGGCGATGGGTCACCGATCTCAATTGACCCCAA
ACTGCTCACGGAAGGGGATCAGCAGAGGCCGGATAACGATACGACTGAAA
TGGGAGTGGGCACTGGAGCTGGCAGCGGCTTCACCCGCAGGAACTCAACG
CGCTCCGGTCTGCACTCGGACCTATCGAAGTACGGCCCGTGGGGCTACCT
GATGCTCGGCATGCTCCTGTGCGGTGGGGCACTGCTCATCTGCGGCCTTT
GGGCCTCCGCATCGCAGCATGCGGTCAACAACGAGCGGGAGGCGGCGCTG
GCCGCTGCCAATGGAGGAGGAAATGGTGGCGGGGACCACCTGGGAGCCAC
CTCGCCGCCCAACTATGAAGAGCTGGATCCGCCGCCGGCCTACTCGGTGC
TCTTTCCCAACCAAAAGGCCGCCAGTAGCACCACACTGAACCTGGATGCC
ACGGCGGCCAGCACAACAGCAGCTGCTGCAGCAGCGGCGGCCGCAGCAGC
AACAGCCGCAGCAGCCACTGCAGCAGCAACTGCGCTGGCAGGAGCAACAC
CCAGCGATTCCGCGCAGCAACATCAGCAACAGGAACAGCCAACGAACTAG
AAGCTTTCTAGACCAT
BS08633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 1734 | CG8180-PC | 1..1734 | 17..1750 | 8670 | 100 | Plus |
CG8180-RA | 1734 | CG8180-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
CG8180-RB | 1785 | CG8180-PB | 1..1387 | 17..1403 | 6935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 2563 | CG8180-RC | 416..2151 | 15..1750 | 8680 | 100 | Plus |
CG8180-RA | 2273 | CG8180-RA | 416..2151 | 15..1750 | 8680 | 100 | Plus |
CG8180-RB | 2324 | CG8180-RB | 416..1804 | 15..1403 | 6945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15473177..15473746 | 1403..834 | 2850 | 100 | Minus |
2R | 25286936 | 2R | 15475941..15476354 | 613..200 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15472587..15472934 | 1750..1403 | 1740 | 100 | Minus |
2R | 25286936 | 2R | 15473885..15474105 | 834..614 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15482233..15482419 | 201..15 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2393 | 1653..1741 | 169 | 70 | Plus |
BS08633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:31 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 1..1734 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:24 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 411..2150 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:19 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 418..2151 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:19 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 417..2150 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:30 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 418..2151 | 17..1750 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:30 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15472587..15472933 | 1404..1750 | 100 | <- | Minus |
2R | 15473177..15473745 | 835..1403 | 100 | <- | Minus |
2R | 15473885..15474105 | 614..834 | 100 | <- | Minus |
2R | 15475941..15476353 | 201..613 | 100 | <- | Minus |
2R | 15482234..15482417 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:19 Download gff for
BS08633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11360092..11360438 | 1404..1750 | 100 | <- | Minus |
arm_2R | 11360682..11361250 | 835..1403 | 100 | <- | Minus |
arm_2R | 11361390..11361610 | 614..834 | 100 | <- | Minus |
arm_2R | 11363446..11363858 | 201..613 | 100 | <- | Minus |
arm_2R | 11369739..11369922 | 17..200 | 100 | | Minus |
BS08633.pep Sequence
Translation from 16 to 1749
> BS08633.pep
MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA
SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY
GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA
AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF
SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL
MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS
DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL
PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG
DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML
LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY
EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA
TAAATALAGATPSDSAQQHQQQEQPTN*
BS08633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-PC | 577 | CG8180-PC | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PA | 577 | CG8180-PA | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PB | 594 | CG8180-PB | 1..594 | 1..577 | 2985 | 97.1 | Plus |