Clone BS08634 Report

Search the DGRC for BS08634

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG5002-RA
Protein status:BS08634.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08634.3prime Sequence

885 bp (839 high quality bases) assembled on 2006-01-11

> BS08634.3prime
ATGGTCTAGAAAGCTTTCAGGCCTCGATGGTTACGGTGGAGGCCGTATTG
GAGGGACTATCGAAGTGGCCAGCTACCACCTCCTCCAGCGATAAATCGAA
CTTGAAGATGGGACGGAGATCGTTGTTGAGTCGGCAGACGACTCCGGCGG
AGGCGATGTTCCAGTTCCAGCAGATCATGGCGCAGTTCAGTGCCTCCAAA
TCGCCCTTCATCGAGACAATATTCATAGCCACTGTATAGTCAATGGAGTT
GATCTCCTCGCCCTTGATAACCACCAACTGGGTCTCGCCATTCTGGTTGT
TCAGGAAGCGCACCACCTTCTCCTTGAGATACTCAGCCGATGCATAGTCC
AGCTTTTGCTTCACATCCACCACGCTAACTTCGTGACCATTGATCTTCTC
CAGTTTGATGTCTACATGTGGACGTGCACTGCTATATAGAATGTATACCA
TGTTGGCACCGATGCCACACAGTATTCCGTACTCCAGACTCCAGAACATG
CAGGTGAGTACAGTGACCACAAAGGGAAACAGATCCTTCTTCTTAGATTT
CCACATGTCCTTAATCTTGTGCAGCTCCACTAGCGATATCATCGCCGCTA
TAATAATTGCAGCCAGCGTGCATTTGGGTATAAAGTAGAAAGTTTGGGTA
AGGAATGCCAGTGCCATGAGCACCAGGGCACCGGTGACAGCTCCACCCAG
TGGTGTCTTCACCCCACTGGCATTATTCACAGCCGTGCGGGTAAAGGATC
CCGTTACGGGCATGGAGAGCACAAAGCTGCCCATGATGTTGCACATTCCC
AGTGCCACCATCTCCTGCGATGCGTCTACATTTTTTCCCTTAGAAAATGC
CTTCGATATGGCTACTATTTCCAGGATCGAAATCA

BS08634.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-PA 1788 CG5002-RA 920..1788 885..17 4320 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1998 CG5002-RA 1062..1931 885..16 4335 99.9 Minus
CG7912-RA 1992 CG7912-RA 1118..1324 853..647 255 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17752134..17752436 843..541 1500 99.7 Minus
2R 25286936 2R 17752939..17753147 224..16 1045 100 Minus
2R 25286936 2R 17752705..17752877 396..224 865 100 Minus
2R 25286936 2R 17752499..17752644 540..395 730 100 Minus
3R 32079331 3R 30006891..30007070 647..826 240 75.6 Plus
2R 25286936 2R 17752033..17752079 885..839 220 97.9 Minus
Blast to na_te.dros performed on 2015-02-02 17:48:55 has no hits.

BS08634.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:53 Download gff for BS08634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 921..1788 17..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:13 Download gff for BS08634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 921..1788 17..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:12 Download gff for BS08634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 1063..1931 16..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:29 Download gff for BS08634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 1063..1931 16..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:29 Download gff for BS08634.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17752034..17752074 844..884 100 -> Minus
2R 17752134..17752436 541..843 99 -> Minus
2R 17752499..17752644 395..540 100 -> Minus
2R 17752707..17752877 224..394 100 -> Minus
2R 17752940..17753147 16..223 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:12 Download gff for BS08634.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13639539..13639579 844..884 100 -> Minus
arm_2R 13639639..13639941 541..843 99 -> Minus
arm_2R 13640004..13640149 395..540 100 -> Minus
arm_2R 13640212..13640382 224..394 100 -> Minus
arm_2R 13640445..13640652 16..223 100   Minus

BS08634.5prime Sequence

554 bp (498 high quality bases) assembled on 2006-01-11

> BS08634.5prime
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGA

BS08634.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-PA 1788 CG5002-RA 1..538 17..554 2690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1998 CG5002-RA 143..680 17..554 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17750771..17751071 32..332 1505 100 Plus
2R 25286936 2R 17751130..17751352 332..554 1115 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:42:29 has no hits.

BS08634.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:54 Download gff for BS08634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:14 Download gff for BS08634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:05 Download gff for BS08634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 139..679 13..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:23 Download gff for BS08634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 139..679 13..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:23 Download gff for BS08634.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17750772..17751071 33..332 100 -> Plus
2R 17751131..17751351 333..553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:05 Download gff for BS08634.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13638277..13638576 33..332 100 -> Plus
arm_2R 13638636..13638856 333..553 100   Plus

BS08634.complete Sequence

1820 bp assembled on 2008-01-16

GenBank Submission: FJ636214

> BS08634.complete
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGACCAGTCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCAC
CCACTTGACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTC
TGGTGTTCCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAAT
CGTATATTCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGAT
CTTTGGCACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCT
TCCGTGTCACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCG
CCCTTTAGCACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGATGAT
CAGCACTGTCGGCGCATCCTTGGGTTCCATCCCCTTGATTTCGATCCTGG
AAATAGTAGCCATATCGAAGGCATTTTCTAAGGGAAAAATTGTAGACGCA
TCGCAGGAGATGGTGGCACTGGGAATGTGCAACATCATGGGCAGCTTTGT
GCTCTCCATGCCCGTAACGGGATCCTTTACCCGCACGGCTGTGAATAATG
CCAGTGGGGTGAAGACACCACTGGGTGGAGCTGTCACCGGTGCCCTGGTG
CTCATGGCACTGGCATTCCTTACCCAAACTTTCTACTTTATACCCAAATG
CACGCTGGCTGCAATTATTATAGCGGCGATGATATCGCTAGTGGAGCTGC
ACAAGATTAAGGACATGTGGAAATCTAAGAAGAAGGATCTGTTTCCCTTT
GTGGTCACTGTACTCACCTGCATGTTCTGGAGTCTGGAGTACGGAATACT
GTGTGGCATCGGTGCCAACATGGTATACATTCTATATAGCAGTGCACGTC
CACATGTAGACATCAAACTGGAGAAGATCAATGGTCACGAAGTTAGCGTG
GTGGATGTGAAGCAAAAGCTGGACTATGCATCGGCTGAGTATCTCAAGGA
GAAGGTGGTGCGCTTCCTGAACAACCAGAATGGCGAGACCCAGTTGGTGG
TTATCAAGGGCGAGGAGATCAACTCCATTGACTATACAGTGGCTATGAAT
ATTGTCTCGATGAAGGGCGATTTGGAGGCACTGAACTGCGCCATGATCTG
CTGGAACTGGAACATCGCCTCCGCCGGAGTCGTCTGCCGACTCAACAACG
ATCTCCGTCCCATCTTCAAGTTCGATTTATCGCTGGAGGAGGTGGTAGCT
GGCCACTTCGATAGTCCCTCCAATACGGCCTCCACCGTAACCATCGAGGC
CTGAAAGCTTTCTAGACCAT

BS08634.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1788 CG5002-PA 1..1788 17..1804 8940 100 Plus
CG7912-RA 1809 CG7912-PA 958..1164 968..1174 270 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1998 CG5002-RA 143..1931 17..1805 8945 100 Plus
CG7912-RA 1992 CG7912-RA 1118..1324 968..1174 270 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17751770..17752079 673..982 1535 99.7 Plus
2R 25286936 2R 17752134..17752436 978..1280 1515 100 Plus
2R 25286936 2R 17750771..17751071 32..332 1505 100 Plus
2R 25286936 2R 17751130..17751357 332..559 1140 100 Plus
2R 25286936 2R 17752939..17753147 1597..1805 1045 100 Plus
2R 25286936 2R 17752705..17752877 1425..1597 865 100 Plus
2R 25286936 2R 17752499..17752644 1281..1426 730 100 Plus
2R 25286936 2R 17751430..17751545 558..673 580 100 Plus
3R 32079331 3R 30006891..30007085 1174..980 255 75.4 Minus
Blast to na_te.dros performed on 2014-11-26 16:49:33 has no hits.

BS08634.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:33 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 1..1788 17..1804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:05 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 138..1924 17..1803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:42 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 143..1929 17..1803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:33 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 134..1926 13..1805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:19 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 143..1929 17..1803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:19 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17752499..17752644 1281..1426 100 -> Plus
2R 17752707..17752877 1427..1597 100 -> Plus
2R 17752940..17753145 1598..1803 100   Plus
2R 17750435..17750450 17..32 100 -> Plus
2R 17750772..17751071 33..332 100 -> Plus
2R 17751131..17751355 333..557 100 -> Plus
2R 17751430..17751545 558..673 100 -> Plus
2R 17751771..17752074 674..977 100 -> Plus
2R 17752134..17752436 978..1280 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:42 Download gff for BS08634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13637940..13637955 17..32 100 -> Plus
arm_2R 13638277..13638576 33..332 100 -> Plus
arm_2R 13639276..13639579 674..977 100 -> Plus
arm_2R 13638636..13638860 333..557 100 -> Plus
arm_2R 13638935..13639050 558..673 100 -> Plus
arm_2R 13639639..13639941 978..1280 100 -> Plus
arm_2R 13640004..13640149 1281..1426 100 -> Plus
arm_2R 13640212..13640382 1427..1597 100 -> Plus
arm_2R 13640445..13640650 1598..1803 100   Plus

BS08634.pep Sequence

Translation from 16 to 1803

> BS08634.pep
MRADEDNLYREQLPNVSTLIRDGGRKLCRPSTVTNKFPILKWLPRYRLEY
IMQDFIAGFTVGLTTIPQAIAYGVVAGLEPQYGLYSAFMGCFTYIVFGSC
KDVTIATTAIMALMVNQYATISPDYAVLVCFLAGCIVLLLGLLNMGVLVR
FISIPVITGFTMAAATTIGSAQINNIVGLTSPSNDLLPAWKNFFTHLTSI
RLWDALLGVSSLVFLLLMTRVKDIKWGNRIFWKYLGLSRNALAVIFGTFL
AYILSRDGNQPFRVTGNITAGVPPFRLPPFSTTVDGEYVSFGEMISTVGA
SLGSIPLISILEIVAISKAFSKGKIVDASQEMVALGMCNIMGSFVLSMPV
TGSFTRTAVNNASGVKTPLGGAVTGALVLMALAFLTQTFYFIPKCTLAAI
IIAAMISLVELHKIKDMWKSKKKDLFPFVVTVLTCMFWSLEYGILCGIGA
NMVYILYSSARPHVDIKLEKINGHEVSVVDVKQKLDYASAEYLKEKVVRF
LNNQNGETQLVVIKGEEINSIDYTVAMNIVSMKGDLEALNCAMICWNWNI
ASAGVVCRLNNDLRPIFKFDLSLEEVVAGHFDSPSNTASTVTIEA*

BS08634.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-PA 595 CG5002-PA 1..595 1..595 3043 100 Plus
CG7912-PA 602 CG7912-PA 1..583 1..577 1747 57.1 Plus
Esp-PB 654 CG7005-PB 56..611 14..547 1039 41.1 Plus
Esp-PA 654 CG7005-PA 56..611 14..547 1039 41.1 Plus
CG9702-PB 676 CG9702-PB 66..667 25..593 935 36.5 Plus