Clone Sequence Records
BS08634.3prime Sequence
885 bp (839 high quality bases) assembled on 2006-01-11
> BS08634.3prime
ATGGTCTAGAAAGCTTTCAGGCCTCGATGGTTACGGTGGAGGCCGTATTG
GAGGGACTATCGAAGTGGCCAGCTACCACCTCCTCCAGCGATAAATCGAA
CTTGAAGATGGGACGGAGATCGTTGTTGAGTCGGCAGACGACTCCGGCGG
AGGCGATGTTCCAGTTCCAGCAGATCATGGCGCAGTTCAGTGCCTCCAAA
TCGCCCTTCATCGAGACAATATTCATAGCCACTGTATAGTCAATGGAGTT
GATCTCCTCGCCCTTGATAACCACCAACTGGGTCTCGCCATTCTGGTTGT
TCAGGAAGCGCACCACCTTCTCCTTGAGATACTCAGCCGATGCATAGTCC
AGCTTTTGCTTCACATCCACCACGCTAACTTCGTGACCATTGATCTTCTC
CAGTTTGATGTCTACATGTGGACGTGCACTGCTATATAGAATGTATACCA
TGTTGGCACCGATGCCACACAGTATTCCGTACTCCAGACTCCAGAACATG
CAGGTGAGTACAGTGACCACAAAGGGAAACAGATCCTTCTTCTTAGATTT
CCACATGTCCTTAATCTTGTGCAGCTCCACTAGCGATATCATCGCCGCTA
TAATAATTGCAGCCAGCGTGCATTTGGGTATAAAGTAGAAAGTTTGGGTA
AGGAATGCCAGTGCCATGAGCACCAGGGCACCGGTGACAGCTCCACCCAG
TGGTGTCTTCACCCCACTGGCATTATTCACAGCCGTGCGGGTAAAGGATC
CCGTTACGGGCATGGAGAGCACAAAGCTGCCCATGATGTTGCACATTCCC
AGTGCCACCATCTCCTGCGATGCGTCTACATTTTTTCCCTTAGAAAATGC
CTTCGATATGGCTACTATTTCCAGGATCGAAATCA
BS08634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-PA | 1788 | CG5002-RA | 920..1788 | 885..17 | 4320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1998 | CG5002-RA | 1062..1931 | 885..16 | 4335 | 99.9 | Minus |
CG7912-RA | 1992 | CG7912-RA | 1118..1324 | 853..647 | 255 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17752134..17752436 | 843..541 | 1500 | 99.7 | Minus |
2R | 25286936 | 2R | 17752939..17753147 | 224..16 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 17752705..17752877 | 396..224 | 865 | 100 | Minus |
2R | 25286936 | 2R | 17752499..17752644 | 540..395 | 730 | 100 | Minus |
3R | 32079331 | 3R | 30006891..30007070 | 647..826 | 240 | 75.6 | Plus |
2R | 25286936 | 2R | 17752033..17752079 | 885..839 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:48:55 has no hits.
BS08634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:53 Download gff for
BS08634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 921..1788 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:13 Download gff for
BS08634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 921..1788 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:12 Download gff for
BS08634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 1063..1931 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:29 Download gff for
BS08634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 1063..1931 | 16..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:29 Download gff for
BS08634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17752034..17752074 | 844..884 | 100 | -> | Minus |
2R | 17752134..17752436 | 541..843 | 99 | -> | Minus |
2R | 17752499..17752644 | 395..540 | 100 | -> | Minus |
2R | 17752707..17752877 | 224..394 | 100 | -> | Minus |
2R | 17752940..17753147 | 16..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:12 Download gff for
BS08634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13639539..13639579 | 844..884 | 100 | -> | Minus |
arm_2R | 13639639..13639941 | 541..843 | 99 | -> | Minus |
arm_2R | 13640004..13640149 | 395..540 | 100 | -> | Minus |
arm_2R | 13640212..13640382 | 224..394 | 100 | -> | Minus |
arm_2R | 13640445..13640652 | 16..223 | 100 | | Minus |
BS08634.5prime Sequence
554 bp (498 high quality bases) assembled on 2006-01-11
> BS08634.5prime
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGA
BS08634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-PA | 1788 | CG5002-RA | 1..538 | 17..554 | 2690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1998 | CG5002-RA | 143..680 | 17..554 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17750771..17751071 | 32..332 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 17751130..17751352 | 332..554 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:42:29 has no hits.
BS08634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:54 Download gff for
BS08634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:14 Download gff for
BS08634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:05 Download gff for
BS08634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 139..679 | 13..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:23 Download gff for
BS08634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 139..679 | 13..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:23 Download gff for
BS08634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17750772..17751071 | 33..332 | 100 | -> | Plus |
2R | 17751131..17751351 | 333..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:05 Download gff for
BS08634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13638277..13638576 | 33..332 | 100 | -> | Plus |
arm_2R | 13638636..13638856 | 333..553 | 100 | | Plus |
BS08634.complete Sequence
1820 bp assembled on 2008-01-16
GenBank Submission: FJ636214
> BS08634.complete
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGACCAGTCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCAC
CCACTTGACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTC
TGGTGTTCCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAAT
CGTATATTCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGAT
CTTTGGCACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCT
TCCGTGTCACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCG
CCCTTTAGCACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGATGAT
CAGCACTGTCGGCGCATCCTTGGGTTCCATCCCCTTGATTTCGATCCTGG
AAATAGTAGCCATATCGAAGGCATTTTCTAAGGGAAAAATTGTAGACGCA
TCGCAGGAGATGGTGGCACTGGGAATGTGCAACATCATGGGCAGCTTTGT
GCTCTCCATGCCCGTAACGGGATCCTTTACCCGCACGGCTGTGAATAATG
CCAGTGGGGTGAAGACACCACTGGGTGGAGCTGTCACCGGTGCCCTGGTG
CTCATGGCACTGGCATTCCTTACCCAAACTTTCTACTTTATACCCAAATG
CACGCTGGCTGCAATTATTATAGCGGCGATGATATCGCTAGTGGAGCTGC
ACAAGATTAAGGACATGTGGAAATCTAAGAAGAAGGATCTGTTTCCCTTT
GTGGTCACTGTACTCACCTGCATGTTCTGGAGTCTGGAGTACGGAATACT
GTGTGGCATCGGTGCCAACATGGTATACATTCTATATAGCAGTGCACGTC
CACATGTAGACATCAAACTGGAGAAGATCAATGGTCACGAAGTTAGCGTG
GTGGATGTGAAGCAAAAGCTGGACTATGCATCGGCTGAGTATCTCAAGGA
GAAGGTGGTGCGCTTCCTGAACAACCAGAATGGCGAGACCCAGTTGGTGG
TTATCAAGGGCGAGGAGATCAACTCCATTGACTATACAGTGGCTATGAAT
ATTGTCTCGATGAAGGGCGATTTGGAGGCACTGAACTGCGCCATGATCTG
CTGGAACTGGAACATCGCCTCCGCCGGAGTCGTCTGCCGACTCAACAACG
ATCTCCGTCCCATCTTCAAGTTCGATTTATCGCTGGAGGAGGTGGTAGCT
GGCCACTTCGATAGTCCCTCCAATACGGCCTCCACCGTAACCATCGAGGC
CTGAAAGCTTTCTAGACCAT
BS08634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1788 | CG5002-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
CG7912-RA | 1809 | CG7912-PA | 958..1164 | 968..1174 | 270 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1998 | CG5002-RA | 143..1931 | 17..1805 | 8945 | 100 | Plus |
CG7912-RA | 1992 | CG7912-RA | 1118..1324 | 968..1174 | 270 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17751770..17752079 | 673..982 | 1535 | 99.7 | Plus |
2R | 25286936 | 2R | 17752134..17752436 | 978..1280 | 1515 | 100 | Plus |
2R | 25286936 | 2R | 17750771..17751071 | 32..332 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 17751130..17751357 | 332..559 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 17752939..17753147 | 1597..1805 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 17752705..17752877 | 1425..1597 | 865 | 100 | Plus |
2R | 25286936 | 2R | 17752499..17752644 | 1281..1426 | 730 | 100 | Plus |
2R | 25286936 | 2R | 17751430..17751545 | 558..673 | 580 | 100 | Plus |
3R | 32079331 | 3R | 30006891..30007085 | 1174..980 | 255 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:49:33 has no hits.
BS08634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:33 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 1..1788 | 17..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:05 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 138..1924 | 17..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:42 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 143..1929 | 17..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:33 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 134..1926 | 13..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:19 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 143..1929 | 17..1803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:19 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17752499..17752644 | 1281..1426 | 100 | -> | Plus |
2R | 17752707..17752877 | 1427..1597 | 100 | -> | Plus |
2R | 17752940..17753145 | 1598..1803 | 100 | | Plus |
2R | 17750435..17750450 | 17..32 | 100 | -> | Plus |
2R | 17750772..17751071 | 33..332 | 100 | -> | Plus |
2R | 17751131..17751355 | 333..557 | 100 | -> | Plus |
2R | 17751430..17751545 | 558..673 | 100 | -> | Plus |
2R | 17751771..17752074 | 674..977 | 100 | -> | Plus |
2R | 17752134..17752436 | 978..1280 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:42 Download gff for
BS08634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13637940..13637955 | 17..32 | 100 | -> | Plus |
arm_2R | 13638277..13638576 | 33..332 | 100 | -> | Plus |
arm_2R | 13639276..13639579 | 674..977 | 100 | -> | Plus |
arm_2R | 13638636..13638860 | 333..557 | 100 | -> | Plus |
arm_2R | 13638935..13639050 | 558..673 | 100 | -> | Plus |
arm_2R | 13639639..13639941 | 978..1280 | 100 | -> | Plus |
arm_2R | 13640004..13640149 | 1281..1426 | 100 | -> | Plus |
arm_2R | 13640212..13640382 | 1427..1597 | 100 | -> | Plus |
arm_2R | 13640445..13640650 | 1598..1803 | 100 | | Plus |
BS08634.pep Sequence
Translation from 16 to 1803
> BS08634.pep
MRADEDNLYREQLPNVSTLIRDGGRKLCRPSTVTNKFPILKWLPRYRLEY
IMQDFIAGFTVGLTTIPQAIAYGVVAGLEPQYGLYSAFMGCFTYIVFGSC
KDVTIATTAIMALMVNQYATISPDYAVLVCFLAGCIVLLLGLLNMGVLVR
FISIPVITGFTMAAATTIGSAQINNIVGLTSPSNDLLPAWKNFFTHLTSI
RLWDALLGVSSLVFLLLMTRVKDIKWGNRIFWKYLGLSRNALAVIFGTFL
AYILSRDGNQPFRVTGNITAGVPPFRLPPFSTTVDGEYVSFGEMISTVGA
SLGSIPLISILEIVAISKAFSKGKIVDASQEMVALGMCNIMGSFVLSMPV
TGSFTRTAVNNASGVKTPLGGAVTGALVLMALAFLTQTFYFIPKCTLAAI
IIAAMISLVELHKIKDMWKSKKKDLFPFVVTVLTCMFWSLEYGILCGIGA
NMVYILYSSARPHVDIKLEKINGHEVSVVDVKQKLDYASAEYLKEKVVRF
LNNQNGETQLVVIKGEEINSIDYTVAMNIVSMKGDLEALNCAMICWNWNI
ASAGVVCRLNNDLRPIFKFDLSLEEVVAGHFDSPSNTASTVTIEA*
BS08634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-PA | 595 | CG5002-PA | 1..595 | 1..595 | 3043 | 100 | Plus |
CG7912-PA | 602 | CG7912-PA | 1..583 | 1..577 | 1747 | 57.1 | Plus |
Esp-PB | 654 | CG7005-PB | 56..611 | 14..547 | 1039 | 41.1 | Plus |
Esp-PA | 654 | CG7005-PA | 56..611 | 14..547 | 1039 | 41.1 | Plus |
CG9702-PB | 676 | CG9702-PB | 66..667 | 25..593 | 935 | 36.5 | Plus |