Clone Sequence Records
BS08635.3prime Sequence
905 bp (802 high quality bases) assembled on 2006-01-11
> BS08635.3prime
ATGGTCTAGAAAGCTTCTAGTGGGTCTGATTGCCGGGCACTGCGTTGACA
ACCGCCTGCGTCACGGCTTTCAGAGCAGCCGGAGCAGCAGGTGCAGCTGG
TGTCGGAGCAACTGGATCCAGCGACGGGACTGTGGGATTGTGAAAGAAAT
AGAGCAGAAATCCGGCGGCCAGCACCACATGTGCACTCAGGATTCCAACG
ATGAGGAACAGCGAGAATTGCGAGTTGCGCAGCGCTGGCGTTAGCACCGC
AATCAAAACCGTGCCCGAAAGCAAGGCGGCGGTGATCACCAGGAGCCACT
GCAGCAGAGAGATATTGATCACCCAGAGAATGGAGACTGGTATATAAATG
GCCAAACTGTATCCATAGATGCACATCAGCGACAAGAGGCTCGGCATGTA
GCTGGCGCTGTCCGTTTCCACGGCATCAGCGGAGTCCACAGGCTTCAGGC
TGTACTTGAAGAGGGCCCACAGAACGGCTGGCAAGATATTGGCATACAAG
AAGATGGACGTAGCCGCATAGGAGACCAGATGGAAGTTGTAGTGCCATTT
GTACGCATCAGTGGCTTGCTGCAAATAGCTGGCAATATTACCACTTATTG
CTATGGAAAAGATCAGGGTGACGGTTATCCAGAAGGGTCCATATAGATCC
GGATTCTCGCCGATGTTCATGCGCAGATAGTTGCCAGAGGCCCGTTTGGG
TATCATGGAGTTGGCGATTCGCTCGAGCACCATATAGGTGTCCACGTTGA
AGAACTGCTGGTAGTACTCGATCGTAAACAGTGATAGTTTCGCACCACCG
CCTCCACCGCCGGCGGATCCGTCCAGCGATGAGTTCTGCGGCTGGGAGCC
GCCCGAGGATGCAGCTCCGGAGAATCCCTGGGCCGAGGAGGTCATGTCAT
AGATG
BS08635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-PA | 1083 | CG4645-RA | 195..1083 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1415 | CG4645-RB | 339..1227 | 905..17 | 4445 | 100 | Minus |
CG4645-RC | 1588 | CG4645-RC | 339..1227 | 905..17 | 4445 | 100 | Minus |
CG4645-RA | 1521 | CG4645-RA | 445..1333 | 905..17 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12911413..12911709 | 313..17 | 1485 | 100 | Minus |
X | 23542271 | X | 12910397..12910688 | 905..614 | 1460 | 100 | Minus |
X | 23542271 | X | 12910752..12910960 | 614..406 | 1045 | 100 | Minus |
X | 23542271 | X | 12911024..12911116 | 406..314 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:23:51 has no hits.
BS08635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:55 Download gff for
BS08635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 195..1083 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:16 Download gff for
BS08635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 195..1083 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:18 Download gff for
BS08635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 445..1342 | 9..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:49 Download gff for
BS08635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 445..1342 | 9..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:49 Download gff for
BS08635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12910753..12910959 | 407..613 | 100 | -> | Minus |
X | 12911024..12911116 | 314..406 | 100 | -> | Minus |
X | 12911413..12911718 | 9..313 | 99 | | Minus |
X | 12910397..12910688 | 614..905 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:18 Download gff for
BS08635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12804430..12804721 | 614..905 | 100 | -> | Minus |
arm_X | 12804786..12804992 | 407..613 | 100 | -> | Minus |
arm_X | 12805057..12805149 | 314..406 | 100 | -> | Minus |
arm_X | 12805446..12805751 | 9..313 | 99 | | Minus |
BS08635.5prime Sequence
850 bp (832 high quality bases) assembled on 2006-01-11
> BS08635.5prime
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTTC
BS08635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-PA | 1083 | CG4645-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1415 | CG4645-RB | 145..976 | 17..848 | 4160 | 100 | Plus |
CG4645-RC | 1588 | CG4645-RC | 145..976 | 17..848 | 4160 | 100 | Plus |
CG4645-RA | 1521 | CG4645-RA | 251..1082 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12910203..12910688 | 17..502 | 2430 | 100 | Plus |
X | 23542271 | X | 12910752..12910960 | 502..710 | 1045 | 100 | Plus |
X | 23542271 | X | 12911024..12911116 | 710..802 | 465 | 100 | Plus |
X | 23542271 | X | 12911413..12911458 | 803..848 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:38:56 has no hits.
BS08635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:56 Download gff for
BS08635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 1..833 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:18 Download gff for
BS08635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 1..833 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:43 Download gff for
BS08635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1083 | 12..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:01:53 Download gff for
BS08635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1083 | 12..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:01:53 Download gff for
BS08635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12910198..12910688 | 12..502 | 99 | -> | Plus |
X | 12910753..12910959 | 503..709 | 100 | -> | Plus |
X | 12911024..12911116 | 710..802 | 100 | -> | Plus |
X | 12911413..12911459 | 803..850 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:43 Download gff for
BS08635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12804231..12804721 | 12..502 | 99 | -> | Plus |
arm_X | 12804786..12804992 | 503..709 | 100 | -> | Plus |
arm_X | 12805057..12805149 | 710..802 | 100 | -> | Plus |
arm_X | 12805446..12805492 | 803..850 | 97 | | Plus |
BS08635.complete Sequence
1115 bp (1115 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636215
> BS08635.complete
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTCG
GGCACGGTTTTGATTGCGGTGCTAACGCCAGCGCTGCGCAACTCGCAATT
CTCGCTGTTCCTCATCGTTGGAATCCTGAGTGCACATGTGGTGCTGGCCG
CCGGATTTCTGCTCTATTTCTTTCACAATCCCACAGTCCCGTCGCTGGAT
CCAGTTGCTCCGACACCAGCTGCACCTGCTGCTCCGGCTGCTCTGAAAGC
CGTGACGCAGGCGGTTGTCAACGCAGTGCCCGGCAATCAGACCCACTAGA
AGCTTTCTAGACCAT
BS08635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1083 | CG4645-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG4645-RC | 1083 | CG4645-PC | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG4645-RA | 1083 | CG4645-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1415 | CG4645-RB | 145..1227 | 17..1099 | 5415 | 100 | Plus |
CG4645-RC | 1588 | CG4645-RC | 145..1227 | 17..1099 | 5415 | 100 | Plus |
CG4645-RA | 1521 | CG4645-RA | 251..1333 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12910203..12910688 | 17..502 | 2430 | 100 | Plus |
X | 23542271 | X | 12911413..12911709 | 803..1099 | 1485 | 100 | Plus |
X | 23542271 | X | 12910752..12910960 | 502..710 | 1045 | 100 | Plus |
X | 23542271 | X | 12911024..12911116 | 710..802 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:50 has no hits.
BS08635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:09 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 1..1083 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:12 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1342 | 12..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:05 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 251..1333 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:09 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1342 | 12..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:09 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 251..1333 | 17..1099 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:09 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12910203..12910688 | 17..502 | 100 | -> | Plus |
X | 12910753..12910959 | 503..709 | 100 | -> | Plus |
X | 12911024..12911116 | 710..802 | 100 | -> | Plus |
X | 12911413..12911709 | 803..1099 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:05 Download gff for
BS08635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12805057..12805149 | 710..802 | 100 | -> | Plus |
arm_X | 12805446..12805742 | 803..1099 | 100 | | Plus |
arm_X | 12804236..12804721 | 17..502 | 100 | -> | Plus |
arm_X | 12804786..12804992 | 503..709 | 100 | -> | Plus |
BS08635.pep Sequence
Translation from 16 to 1098
> BS08635.pep
METPMADDLLQFRDYSGGAPAQINVNSPTHGGSGGSGGGSAGSGGSVGGG
GANAQRQRGDPLADLIYDMTSSAQGFSGAASSGGSQPQNSSLDGSAGGGG
GGAKLSLFTIEYYQQFFNVDTYMVLERIANSMIPKRASGNYLRMNIGENP
DLYGPFWITVTLIFSIAISGNIASYLQQATDAYKWHYNFHLVSYAATSIF
LYANILPAVLWALFKYSLKPVDSADAVETDSASYMPSLLSLMCIYGYSLA
IYIPVSILWVINISLLQWLLVITAALLSGTVLIAVLTPALRNSQFSLFLI
VGILSAHVVLAAGFLLYFFHNPTVPSLDPVAPTPAAPAAPAALKAVTQAV
VNAVPGNQTH*
BS08635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-PB | 360 | CG4645-PB | 1..360 | 1..360 | 1845 | 100 | Plus |
CG4645-PC | 360 | CG4645-PC | 1..360 | 1..360 | 1845 | 100 | Plus |
CG4645-PA | 360 | CG4645-PA | 1..360 | 1..360 | 1845 | 100 | Plus |