Clone BS08635 Report

Search the DGRC for BS08635

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG4645-RA
Protein status:BS08635.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08635.3prime Sequence

905 bp (802 high quality bases) assembled on 2006-01-11

> BS08635.3prime
ATGGTCTAGAAAGCTTCTAGTGGGTCTGATTGCCGGGCACTGCGTTGACA
ACCGCCTGCGTCACGGCTTTCAGAGCAGCCGGAGCAGCAGGTGCAGCTGG
TGTCGGAGCAACTGGATCCAGCGACGGGACTGTGGGATTGTGAAAGAAAT
AGAGCAGAAATCCGGCGGCCAGCACCACATGTGCACTCAGGATTCCAACG
ATGAGGAACAGCGAGAATTGCGAGTTGCGCAGCGCTGGCGTTAGCACCGC
AATCAAAACCGTGCCCGAAAGCAAGGCGGCGGTGATCACCAGGAGCCACT
GCAGCAGAGAGATATTGATCACCCAGAGAATGGAGACTGGTATATAAATG
GCCAAACTGTATCCATAGATGCACATCAGCGACAAGAGGCTCGGCATGTA
GCTGGCGCTGTCCGTTTCCACGGCATCAGCGGAGTCCACAGGCTTCAGGC
TGTACTTGAAGAGGGCCCACAGAACGGCTGGCAAGATATTGGCATACAAG
AAGATGGACGTAGCCGCATAGGAGACCAGATGGAAGTTGTAGTGCCATTT
GTACGCATCAGTGGCTTGCTGCAAATAGCTGGCAATATTACCACTTATTG
CTATGGAAAAGATCAGGGTGACGGTTATCCAGAAGGGTCCATATAGATCC
GGATTCTCGCCGATGTTCATGCGCAGATAGTTGCCAGAGGCCCGTTTGGG
TATCATGGAGTTGGCGATTCGCTCGAGCACCATATAGGTGTCCACGTTGA
AGAACTGCTGGTAGTACTCGATCGTAAACAGTGATAGTTTCGCACCACCG
CCTCCACCGCCGGCGGATCCGTCCAGCGATGAGTTCTGCGGCTGGGAGCC
GCCCGAGGATGCAGCTCCGGAGAATCCCTGGGCCGAGGAGGTCATGTCAT
AGATG

BS08635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-PA 1083 CG4645-RA 195..1083 905..17 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1415 CG4645-RB 339..1227 905..17 4445 100 Minus
CG4645-RC 1588 CG4645-RC 339..1227 905..17 4445 100 Minus
CG4645-RA 1521 CG4645-RA 445..1333 905..17 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12911413..12911709 313..17 1485 100 Minus
X 23542271 X 12910397..12910688 905..614 1460 100 Minus
X 23542271 X 12910752..12910960 614..406 1045 100 Minus
X 23542271 X 12911024..12911116 406..314 465 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:23:51 has no hits.

BS08635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:55 Download gff for BS08635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 195..1083 17..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:16 Download gff for BS08635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 195..1083 17..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:18 Download gff for BS08635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 445..1342 9..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:49 Download gff for BS08635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 445..1342 9..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:49 Download gff for BS08635.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12910753..12910959 407..613 100 -> Minus
X 12911024..12911116 314..406 100 -> Minus
X 12911413..12911718 9..313 99   Minus
X 12910397..12910688 614..905 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:18 Download gff for BS08635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12804430..12804721 614..905 100 -> Minus
arm_X 12804786..12804992 407..613 100 -> Minus
arm_X 12805057..12805149 314..406 100 -> Minus
arm_X 12805446..12805751 9..313 99   Minus

BS08635.5prime Sequence

850 bp (832 high quality bases) assembled on 2006-01-11

> BS08635.5prime
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTTC

BS08635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-PA 1083 CG4645-RA 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1415 CG4645-RB 145..976 17..848 4160 100 Plus
CG4645-RC 1588 CG4645-RC 145..976 17..848 4160 100 Plus
CG4645-RA 1521 CG4645-RA 251..1082 17..848 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12910203..12910688 17..502 2430 100 Plus
X 23542271 X 12910752..12910960 502..710 1045 100 Plus
X 23542271 X 12911024..12911116 710..802 465 100 Plus
X 23542271 X 12911413..12911458 803..848 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:38:56 has no hits.

BS08635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:56 Download gff for BS08635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 1..833 17..850 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:18 Download gff for BS08635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 1..833 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:43 Download gff for BS08635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1083 12..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:01:53 Download gff for BS08635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1083 12..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:01:53 Download gff for BS08635.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12910198..12910688 12..502 99 -> Plus
X 12910753..12910959 503..709 100 -> Plus
X 12911024..12911116 710..802 100 -> Plus
X 12911413..12911459 803..850 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:43 Download gff for BS08635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12804231..12804721 12..502 99 -> Plus
arm_X 12804786..12804992 503..709 100 -> Plus
arm_X 12805057..12805149 710..802 100 -> Plus
arm_X 12805446..12805492 803..850 97   Plus

BS08635.complete Sequence

1115 bp (1115 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636215

> BS08635.complete
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTCG
GGCACGGTTTTGATTGCGGTGCTAACGCCAGCGCTGCGCAACTCGCAATT
CTCGCTGTTCCTCATCGTTGGAATCCTGAGTGCACATGTGGTGCTGGCCG
CCGGATTTCTGCTCTATTTCTTTCACAATCCCACAGTCCCGTCGCTGGAT
CCAGTTGCTCCGACACCAGCTGCACCTGCTGCTCCGGCTGCTCTGAAAGC
CGTGACGCAGGCGGTTGTCAACGCAGTGCCCGGCAATCAGACCCACTAGA
AGCTTTCTAGACCAT

BS08635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1083 CG4645-PB 1..1083 17..1099 5415 100 Plus
CG4645-RC 1083 CG4645-PC 1..1083 17..1099 5415 100 Plus
CG4645-RA 1083 CG4645-PA 1..1083 17..1099 5415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1415 CG4645-RB 145..1227 17..1099 5415 100 Plus
CG4645-RC 1588 CG4645-RC 145..1227 17..1099 5415 100 Plus
CG4645-RA 1521 CG4645-RA 251..1333 17..1099 5415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12910203..12910688 17..502 2430 100 Plus
X 23542271 X 12911413..12911709 803..1099 1485 100 Plus
X 23542271 X 12910752..12910960 502..710 1045 100 Plus
X 23542271 X 12911024..12911116 710..802 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:50 has no hits.

BS08635.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:09 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 1..1083 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:12 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1342 12..1107 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:05 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 251..1333 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:09 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1342 12..1107 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:09 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 251..1333 17..1099 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:09 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
X 12910203..12910688 17..502 100 -> Plus
X 12910753..12910959 503..709 100 -> Plus
X 12911024..12911116 710..802 100 -> Plus
X 12911413..12911709 803..1099 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:05 Download gff for BS08635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12805057..12805149 710..802 100 -> Plus
arm_X 12805446..12805742 803..1099 100   Plus
arm_X 12804236..12804721 17..502 100 -> Plus
arm_X 12804786..12804992 503..709 100 -> Plus

BS08635.pep Sequence

Translation from 16 to 1098

> BS08635.pep
METPMADDLLQFRDYSGGAPAQINVNSPTHGGSGGSGGGSAGSGGSVGGG
GANAQRQRGDPLADLIYDMTSSAQGFSGAASSGGSQPQNSSLDGSAGGGG
GGAKLSLFTIEYYQQFFNVDTYMVLERIANSMIPKRASGNYLRMNIGENP
DLYGPFWITVTLIFSIAISGNIASYLQQATDAYKWHYNFHLVSYAATSIF
LYANILPAVLWALFKYSLKPVDSADAVETDSASYMPSLLSLMCIYGYSLA
IYIPVSILWVINISLLQWLLVITAALLSGTVLIAVLTPALRNSQFSLFLI
VGILSAHVVLAAGFLLYFFHNPTVPSLDPVAPTPAAPAAPAALKAVTQAV
VNAVPGNQTH*

BS08635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-PB 360 CG4645-PB 1..360 1..360 1845 100 Plus
CG4645-PC 360 CG4645-PC 1..360 1..360 1845 100 Plus
CG4645-PA 360 CG4645-PA 1..360 1..360 1845 100 Plus