Clone Sequence Records
BS08637.3prime Sequence
899 bp (838 high quality bases) assembled on 2006-01-11
> BS08637.3prime
ATGGTCTAGAAAGCTTTTAAGCACCTTTGATATCCATGGCATAGTGGTCC
TCCAGCCGCAGGTCGTGCCTCTTTATTAGCTGGCACTCTGCGCCCTCGAC
GGTGGGAATGGAATACACGTACAAGTACCCATCCTGCGAGGCAATCAAAA
GTCTTAGCTGCTTTTGTATCGTGGCAATAGCGCACATCCTGCGCACTCCC
GCCTCCGGCAGAGTGACCGAGGCGAAGGCACGGCCTTGGCTAAACACGTC
GGTCACCTGCGTGGGCAGGTAGCTGGTGACCGTTTTGCTTAAGAATCTAA
AAAACGAGTAACCCATCCAGTCGTCGCTCGACTGCTTGCTGCCATGGCCT
TCGGCTGTTTCCGTGGCACTGCGATCCAGCCGGAAGATGTGAACCGTCTC
GGTGTTGGAGCTGGACACCAGATATTCGGCGCACGTGCTAAACGACAGCG
AAACGATGGACACACAGCGCTTTAGTCCCCGTCGCAGTTCAAAGAGTCGA
CTGCCATCCTGGGAGCTGAAGACTCGGATCACCGTGCCACGCTCACTGGC
CGTGGCTATCTCCGTGCCCGAGGGACTAAAGGCCAATGCCGCCAGAGGTG
TGTCGTGGGCGGGAATCATGGTCTTGGCGTGCAAGTTGATGGCATCAAAG
ATCTGTACCTCGCCAGCAGTCACGCTGCCTGGGTAGGCCAGATAGCAGTG
CTCCGACGACGAGGAGAGGGCACAAAGACCCTGCGGATTGCACGGTGTGT
CGCGTATGGTGTGCACCACCTTCATGTCCTGGATATTGTGGATATACAAT
GACTCCTCCAGGCACACAATCAATCGCTCGCGATTGAGCTTCACGGCCAG
TATTGTGTTTGCATACGAGTAGTTGCAGATCTCGCTCTGCTTCTTAAAG
BS08637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7986-PA | 1134 | Atg18-RA | 252..1134 | 899..17 | 4415 | 100 | Minus |
CG7986-PB | 1134 | Atg18-RB | 252..1134 | 899..17 | 4415 | 100 | Minus |
CG7986-PC | 1134 | Atg18-RC | 252..1134 | 899..17 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RG | 2235 | CG7986-RG | 616..1498 | 899..17 | 4415 | 100 | Minus |
Atg18a-RC | 2526 | CG7986-RC | 503..1385 | 899..17 | 4415 | 100 | Minus |
Atg18a-RB | 2382 | CG7986-RB | 763..1645 | 899..17 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8187993..8188580 | 899..312 | 2940 | 100 | Minus |
3L | 28110227 | 3L | 8189286..8189445 | 312..153 | 800 | 100 | Minus |
3L | 28110227 | 3L | 8189840..8189977 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:04:37 has no hits.
BS08637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:59 Download gff for
BS08637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-PB | 252..1134 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:21 Download gff for
BS08637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7986-PC | 252..1134 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:09 Download gff for
BS08637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RA | 478..1365 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:46 Download gff for
BS08637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18a-RB | 763..1650 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:46 Download gff for
BS08637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8187993..8188580 | 312..899 | 100 | -> | Minus |
3L | 8189287..8189445 | 153..311 | 100 | -> | Minus |
3L | 8189842..8189982 | 11..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:09 Download gff for
BS08637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8181093..8181680 | 312..899 | 100 | -> | Minus |
arm_3L | 8182387..8182545 | 153..311 | 100 | -> | Minus |
arm_3L | 8182942..8183082 | 11..152 | 97 | | Minus |
BS08637.5prime Sequence
861 bp (795 high quality bases) assembled on 2006-01-11
> BS08637.5prime
GAAGTTATCAGTCGACATGATGAGCCTGCTCGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAAGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTC
BS08637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7986-PA | 1134 | Atg18-RA | 1..845 | 17..861 | 4200 | 99.8 | Plus |
CG7986-PB | 1134 | Atg18-RB | 1..845 | 17..861 | 4200 | 99.8 | Plus |
CG7986-PC | 1134 | Atg18-RC | 1..845 | 17..861 | 4200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RE | 2267 | CG7986-RE | 226..1071 | 16..861 | 4215 | 99.9 | Plus |
Atg18a-RG | 2235 | CG7986-RG | 364..1209 | 16..861 | 4215 | 99.9 | Plus |
Atg18a-RC | 2526 | CG7986-RC | 251..1096 | 16..861 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8187813..8188580 | 88..855 | 3825 | 99.9 | Plus |
3L | 28110227 | 3L | 8187505..8187576 | 16..87 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:57:40 has no hits.
BS08637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:00 Download gff for
BS08637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-PB | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:23 Download gff for
BS08637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7986-PC | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:07 Download gff for
BS08637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RB | 504..1356 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:15 Download gff for
BS08637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18a-RC | 244..1096 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:15 Download gff for
BS08637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8187498..8187576 | 9..87 | 94 | -> | Plus |
3L | 8187813..8188586 | 88..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:07 Download gff for
BS08637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8180598..8180676 | 9..87 | 94 | -> | Plus |
arm_3L | 8180913..8181686 | 88..861 | 99 | | Plus |
BS08637.complete Sequence
1166 bp (1166 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636216
> BS08637.complete
GAAGTTATCAGTCGACATGATGAGCCTGCTCGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCTACCT
GCCCACGCAGGTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCCTCGG
TCACTCTGCCGGAGGCGGGAGTGCGCAGGATGTGCGCTATTGCCACGATA
CAAAAGCAGCTAAGACTTTTGATTGCCTCGCAGGATGGGTACTTGTACGT
GTATTCCATTCCCACCGTCGAGGGCGCAGAGTGCCAGCTAATAAAGAGGC
ACGACCTGCGGCTGGAGGACCACTATGCCATGGATATCAAAGGTGCTTAA
AAGCTTTCTAGACCAT
BS08637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RG | 1134 | CG7986-PG | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Atg18a-RC | 1134 | CG7986-PC | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Atg18a-RB | 1134 | CG7986-PB | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RG | 2235 | CG7986-RG | 364..1498 | 16..1150 | 5675 | 100 | Plus |
Atg18a-RC | 2526 | CG7986-RC | 251..1385 | 16..1150 | 5675 | 100 | Plus |
Atg18a-RB | 2382 | CG7986-RB | 511..1645 | 16..1150 | 5675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8187813..8188580 | 88..855 | 3840 | 100 | Plus |
3L | 28110227 | 3L | 8189286..8189445 | 855..1014 | 800 | 100 | Plus |
3L | 28110227 | 3L | 8189840..8189977 | 1013..1150 | 690 | 100 | Plus |
3L | 28110227 | 3L | 8187505..8187576 | 16..87 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:23 has no hits.
BS08637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:10 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RC | 1..1134 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:50 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RC | 238..1384 | 9..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:16 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RA | 227..1358 | 17..1148 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:10 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RC | 238..1384 | 9..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:42 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18a-RB | 512..1643 | 17..1148 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:42 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8187506..8187576 | 17..87 | 100 | -> | Plus |
3L | 8187813..8188580 | 88..855 | 100 | -> | Plus |
3L | 8189287..8189445 | 856..1014 | 100 | -> | Plus |
3L | 8189842..8189975 | 1015..1148 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:16 Download gff for
BS08637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8180606..8180676 | 17..87 | 100 | -> | Plus |
arm_3L | 8180913..8181680 | 88..855 | 100 | -> | Plus |
arm_3L | 8182387..8182545 | 856..1014 | 100 | -> | Plus |
arm_3L | 8182942..8183075 | 1015..1148 | 100 | | Plus |
BS08637.pep Sequence
Translation from 16 to 1149
> BS08637.pep
MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY
HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI
LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE
HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT
ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT
ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT
DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT
VEGAECQLIKRHDLRLEDHYAMDIKGA*
BS08637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-PG | 377 | CG7986-PG | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PC | 377 | CG7986-PC | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PB | 377 | CG7986-PB | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PA | 377 | CG7986-PA | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PE | 447 | CG7986-PE | 1..375 | 1..375 | 1907 | 100 | Plus |