Clone BS08637 Report

Search the DGRC for BS08637

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptAtg18a-RA
Protein status:BS08637.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08637.3prime Sequence

899 bp (838 high quality bases) assembled on 2006-01-11

> BS08637.3prime
ATGGTCTAGAAAGCTTTTAAGCACCTTTGATATCCATGGCATAGTGGTCC
TCCAGCCGCAGGTCGTGCCTCTTTATTAGCTGGCACTCTGCGCCCTCGAC
GGTGGGAATGGAATACACGTACAAGTACCCATCCTGCGAGGCAATCAAAA
GTCTTAGCTGCTTTTGTATCGTGGCAATAGCGCACATCCTGCGCACTCCC
GCCTCCGGCAGAGTGACCGAGGCGAAGGCACGGCCTTGGCTAAACACGTC
GGTCACCTGCGTGGGCAGGTAGCTGGTGACCGTTTTGCTTAAGAATCTAA
AAAACGAGTAACCCATCCAGTCGTCGCTCGACTGCTTGCTGCCATGGCCT
TCGGCTGTTTCCGTGGCACTGCGATCCAGCCGGAAGATGTGAACCGTCTC
GGTGTTGGAGCTGGACACCAGATATTCGGCGCACGTGCTAAACGACAGCG
AAACGATGGACACACAGCGCTTTAGTCCCCGTCGCAGTTCAAAGAGTCGA
CTGCCATCCTGGGAGCTGAAGACTCGGATCACCGTGCCACGCTCACTGGC
CGTGGCTATCTCCGTGCCCGAGGGACTAAAGGCCAATGCCGCCAGAGGTG
TGTCGTGGGCGGGAATCATGGTCTTGGCGTGCAAGTTGATGGCATCAAAG
ATCTGTACCTCGCCAGCAGTCACGCTGCCTGGGTAGGCCAGATAGCAGTG
CTCCGACGACGAGGAGAGGGCACAAAGACCCTGCGGATTGCACGGTGTGT
CGCGTATGGTGTGCACCACCTTCATGTCCTGGATATTGTGGATATACAAT
GACTCCTCCAGGCACACAATCAATCGCTCGCGATTGAGCTTCACGGCCAG
TATTGTGTTTGCATACGAGTAGTTGCAGATCTCGCTCTGCTTCTTAAAG

BS08637.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7986-PA 1134 Atg18-RA 252..1134 899..17 4415 100 Minus
CG7986-PB 1134 Atg18-RB 252..1134 899..17 4415 100 Minus
CG7986-PC 1134 Atg18-RC 252..1134 899..17 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RG 2235 CG7986-RG 616..1498 899..17 4415 100 Minus
Atg18a-RC 2526 CG7986-RC 503..1385 899..17 4415 100 Minus
Atg18a-RB 2382 CG7986-RB 763..1645 899..17 4415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8187993..8188580 899..312 2940 100 Minus
3L 28110227 3L 8189286..8189445 312..153 800 100 Minus
3L 28110227 3L 8189840..8189977 154..17 690 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:04:37 has no hits.

BS08637.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:45:59 Download gff for BS08637.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-PB 252..1134 17..899 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:21 Download gff for BS08637.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7986-PC 252..1134 17..899 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:09 Download gff for BS08637.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 478..1365 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:46 Download gff for BS08637.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RB 763..1650 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:46 Download gff for BS08637.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8187993..8188580 312..899 100 -> Minus
3L 8189287..8189445 153..311 100 -> Minus
3L 8189842..8189982 11..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:09 Download gff for BS08637.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8181093..8181680 312..899 100 -> Minus
arm_3L 8182387..8182545 153..311 100 -> Minus
arm_3L 8182942..8183082 11..152 97   Minus

BS08637.5prime Sequence

861 bp (795 high quality bases) assembled on 2006-01-11

> BS08637.5prime
GAAGTTATCAGTCGACATGATGAGCCTGCTCGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAAGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTC

BS08637.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7986-PA 1134 Atg18-RA 1..845 17..861 4200 99.8 Plus
CG7986-PB 1134 Atg18-RB 1..845 17..861 4200 99.8 Plus
CG7986-PC 1134 Atg18-RC 1..845 17..861 4200 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RE 2267 CG7986-RE 226..1071 16..861 4215 99.9 Plus
Atg18a-RG 2235 CG7986-RG 364..1209 16..861 4215 99.9 Plus
Atg18a-RC 2526 CG7986-RC 251..1096 16..861 4215 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8187813..8188580 88..855 3825 99.9 Plus
3L 28110227 3L 8187505..8187576 16..87 360 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:57:40 has no hits.

BS08637.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:00 Download gff for BS08637.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-PB 1..845 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:23 Download gff for BS08637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7986-PC 1..845 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:07 Download gff for BS08637.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-RB 504..1356 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:15 Download gff for BS08637.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RC 244..1096 9..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:15 Download gff for BS08637.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8187498..8187576 9..87 94 -> Plus
3L 8187813..8188586 88..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:07 Download gff for BS08637.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8180598..8180676 9..87 94 -> Plus
arm_3L 8180913..8181686 88..861 99   Plus

BS08637.complete Sequence

1166 bp (1166 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636216

> BS08637.complete
GAAGTTATCAGTCGACATGATGAGCCTGCTCGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCTACCT
GCCCACGCAGGTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCCTCGG
TCACTCTGCCGGAGGCGGGAGTGCGCAGGATGTGCGCTATTGCCACGATA
CAAAAGCAGCTAAGACTTTTGATTGCCTCGCAGGATGGGTACTTGTACGT
GTATTCCATTCCCACCGTCGAGGGCGCAGAGTGCCAGCTAATAAAGAGGC
ACGACCTGCGGCTGGAGGACCACTATGCCATGGATATCAAAGGTGCTTAA
AAGCTTTCTAGACCAT

BS08637.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RG 1134 CG7986-PG 1..1134 17..1150 5670 100 Plus
Atg18a-RC 1134 CG7986-PC 1..1134 17..1150 5670 100 Plus
Atg18a-RB 1134 CG7986-PB 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RG 2235 CG7986-RG 364..1498 16..1150 5675 100 Plus
Atg18a-RC 2526 CG7986-RC 251..1385 16..1150 5675 100 Plus
Atg18a-RB 2382 CG7986-RB 511..1645 16..1150 5675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8187813..8188580 88..855 3840 100 Plus
3L 28110227 3L 8189286..8189445 855..1014 800 100 Plus
3L 28110227 3L 8189840..8189977 1013..1150 690 100 Plus
3L 28110227 3L 8187505..8187576 16..87 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:42:23 has no hits.

BS08637.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:10 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 1..1134 17..1150 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:50 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 238..1384 9..1156 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:16 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 227..1358 17..1148 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:10 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 238..1384 9..1156 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:42 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RB 512..1643 17..1148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:42 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8187506..8187576 17..87 100 -> Plus
3L 8187813..8188580 88..855 100 -> Plus
3L 8189287..8189445 856..1014 100 -> Plus
3L 8189842..8189975 1015..1148 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:16 Download gff for BS08637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8180606..8180676 17..87 100 -> Plus
arm_3L 8180913..8181680 88..855 100 -> Plus
arm_3L 8182387..8182545 856..1014 100 -> Plus
arm_3L 8182942..8183075 1015..1148 100   Plus

BS08637.pep Sequence

Translation from 16 to 1149

> BS08637.pep
MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY
HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI
LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE
HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT
ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT
ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT
DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT
VEGAECQLIKRHDLRLEDHYAMDIKGA*

BS08637.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-PG 377 CG7986-PG 1..377 1..377 1917 100 Plus
Atg18a-PC 377 CG7986-PC 1..377 1..377 1917 100 Plus
Atg18a-PB 377 CG7986-PB 1..377 1..377 1917 100 Plus
Atg18a-PA 377 CG7986-PA 1..377 1..377 1917 100 Plus
Atg18a-PE 447 CG7986-PE 1..375 1..375 1907 100 Plus