Clone Sequence Records
BS08641.3prime Sequence
846 bp (768 high quality bases) assembled on 2006-01-11
> BS08641.3prime
ATGGTCTAGAAAGCTTTCAAATTCGTAAAATTGGTTTCAGTGGCAATGCA
TAGGGACTAAACCAGTCCCGCAGAAAAATTGCCATTAAATCTGTACGGAG
ACTATTATTGTTGTATTCCATGTCCTGGAGTACTAATCCAATGCCAGCTG
AGTAAGTAAAATGCTCTCCCGAAAAACTGGAGGTGCCTATAAAGGCAACC
CTATCGGTGACTAAGTACGAGTTGCAGTTAACTCTACCGCCGGAAATCCT
CTCCAGTTCATTTGTGGTGGGTACAACAAAACGTCGCATTTGTATATCTA
CTCCTTCCGTAATTTTGTCGAGCGCTTGAAGGGACCTCAAGAAGTGATCC
TCGCTGGGATCCGAATACTTCCACCATGAAATAAGCACCTTAATGGCCAC
ACCGCGTTCCAAGGCAGCTCTACGCAGGGCATTGTCTATGACCGGCCAGT
ACTCCAATTTGTTACTCCGTCTTAGCCGAGGAGAGTACTCCATTAAGGAG
AGGTATATAACGTCTGTGGCCTTGTCGATAGCCTCTAAAATGGCATCTAG
CTCTCGGGTCCTTCCAGTAGCGATCAACTCTGGTGGTGATGTGGATAAAT
AAGCTCTCATTGTATGTTTTTTGTTGATGTTTAGCAAAAGCGGTCTTCTT
TGATTGATGTGCGTGTGGTATATCCACGGCCAGCTCTTTGGCACTTCATT
GCTGCCCAGGTACCAATACGCCTTGAAGATCTTTCCCAGATCTAGAGCAA
GATGGGGACAATTTCTGGCCAGCACACCTAATTCCTTGCGTTGCGTCAGT
GATCGCCAGTCCATGCTAGCTGTGCCCAAGTAGAAGTGCTCCCCCG
BS08641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9243-PA | 1482 | CG9243-RA | 655..1482 | 844..17 | 4115 | 99.8 | Minus |
CG9243-PB | 1725 | CG9243-RB | 655..1261 | 844..238 | 3010 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43346-RC | 2482 | CG43346-RC | 1022..1850 | 844..16 | 4130 | 99.9 | Minus |
CG43346-RA | 2250 | CG9243-RB | 790..1618 | 844..16 | 4130 | 99.9 | Minus |
CG43345-RC | 2482 | CG43345-RC | 1022..1850 | 844..16 | 4130 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21167003..21167560 | 287..844 | 2775 | 99.8 | Plus |
2L | 23513712 | 2L | 21166678..21166949 | 16..287 | 1360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:42:25 has no hits.
BS08641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:08 Download gff for
BS08641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 654..1482 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:34 Download gff for
BS08641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 654..1482 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:43 Download gff for
BS08641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43346-RA | 789..1629 | 7..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:38 Download gff for
BS08641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43345-RC | 1021..1861 | 7..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:38 Download gff for
BS08641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21166667..21166948 | 7..286 | 98 | <- | Plus |
2L | 21167003..21167561 | 287..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:43 Download gff for
BS08641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21166667..21166948 | 7..286 | 98 | <- | Plus |
arm_2L | 21167003..21167561 | 287..846 | 99 | | Plus |
BS08641.5prime Sequence
859 bp (816 high quality bases) assembled on 2006-01-11
> BS08641.5prime
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGNGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGCACATC
BS08641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9243-PB | 1725 | CG9243-RB | 1..843 | 17..859 | 4196 | 99.8 | Plus |
CG9243-PA | 1482 | CG9243-RA | 1..843 | 17..859 | 4196 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43346-RC | 2482 | CG43346-RC | 367..1210 | 16..859 | 4209 | 99.9 | Plus |
CG43346-RA | 2250 | CG9243-RB | 135..978 | 16..859 | 4209 | 99.9 | Plus |
CG43345-RC | 2482 | CG43345-RC | 367..1210 | 16..859 | 4209 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21167372..21168215 | 859..16 | 4209 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:42:06 has no hits.
BS08641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:09 Download gff for
BS08641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:35 Download gff for
BS08641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:04 Download gff for
BS08641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43346-RA | 135..978 | 16..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:21 Download gff for
BS08641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43345-RC | 367..1210 | 16..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:21 Download gff for
BS08641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21167372..21168215 | 16..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:04 Download gff for
BS08641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21167372..21168215 | 16..859 | 99 | | Minus |
BS08641.complete Sequence
1514 bp (1514 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636217
> BS08641.complete
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGGGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGCACATCAATCAAAGAAGACCGCTTTTGCTAAACATCAACAAAAAACA
TACAATGAGAGCTTATTTATCCACATCACCACCAGAGTTGATCGCTACTG
GAAGGACCCGAGAGCTAGATGCCATTTTAGAGGCTATCGACAAGGCCACA
GACGTTATATACCTCTCCTTAATGGAGTACTCTCCTCGGCTAAGACGGAG
TAACAAATTGGAGTACTGGCCGGTCATAGACAATGCCCTGCGTAGAGCTG
CCTTGGAACGCGGTGTGGCCATTAAGGTGCTTATTTCATGGTGGAAGTAT
TCGGATCCCAGCGAGGATCACTTCTTGAGGTCCCTTCAAGCGCTCGACAA
AATTACGGAAGGAGTAGATATACAAATGCGACGTTTTGTTGTACCCACCA
CAAATGAACTGGAGAGGATTTCCGGCGGTAGAGTTAACTGCAACTCGTAC
TTAGTCACCGATAGGGTTGCCTTTATAGGCACCTCCAGTTTTTCGGGAGA
GCATTTTACTTACTCAGCTGGCATTGGATTAGTACTCCAGGACATGGAAT
ACAACAATAATAGTCTCCGTACAGATTTAATGGCAATTTTTCTGCGGGAC
TGGTTTAGTCCCTATGCATTGCCACTGAAACCAATTTTACGAATTTGAAA
GCTTTCTAGACCAT
BS08641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43345-RC | 1482 | CG43345-PC | 1..1482 | 17..1498 | 7410 | 100 | Plus |
CG43345-RB | 1482 | CG43345-PB | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43346-RC | 2482 | CG43346-RC | 367..1850 | 16..1499 | 7420 | 100 | Plus |
CG43346-RA | 2250 | CG9243-RB | 135..1618 | 16..1499 | 7420 | 100 | Plus |
CG43345-RC | 2482 | CG43345-RC | 367..1850 | 16..1499 | 7420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21167003..21168215 | 1228..16 | 6065 | 100 | Minus |
2L | 23513712 | 2L | 21166678..21166949 | 1499..1228 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:35 has no hits.
BS08641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:11 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-RA | 1..1482 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:51 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-RA | 130..1624 | 16..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:13 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43346-RA | 136..1616 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:12 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-RA | 130..1624 | 16..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:33 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43345-RC | 368..1848 | 17..1497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:33 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21166680..21166948 | 1229..1497 | 100 | <- | Minus |
2L | 21167003..21168214 | 17..1228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:13 Download gff for
BS08641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21166680..21166948 | 1229..1497 | 100 | <- | Minus |
arm_2L | 21167003..21168214 | 17..1228 | 100 | | Minus |
BS08641.pep Sequence
Translation from 16 to 1497
> BS08641.pep
MSERRVVHEIPGEYQPVPRAPEEPTPLTTSCCRRPNCGLGLQDERNICSC
KHGYIIPVLILFVLVMIVLLLPWETYHRNENGNSPVPVEKPLPCQLELVE
SLPLGLNYSQWQSHPQLSSTFDAWQLLLGRAKASLDIVSPHWTLRGLDVN
DSSTGPGDQLFQQLLSNGDAGRPKLRVRIVVNRSHDSLWHADARILANYG
AADVVGINFLHSKLWLVDGEHFYLGTASMDWRSLTQRKELGVLARNCPHL
ALDLGKIFKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINKKHTMRAY
LSTSPPELIATGRTRELDAILEAIDKATDVIYLSLMEYSPRLRRSNKLEY
WPVIDNALRRAALERGVAIKVLISWWKYSDPSEDHFLRSLQALDKITEGV
DIQMRRFVVPTTNELERISGGRVNCNSYLVTDRVAFIGTSSFSGEHFTYS
AGIGLVLQDMEYNNNSLRTDLMAIFLRDWFSPYALPLKPILRI*
BS08641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43345-PC | 493 | CG43345-PC | 1..493 | 1..493 | 2622 | 100 | Plus |
CG43345-PB | 493 | CG9243-PA | 1..493 | 1..493 | 2622 | 100 | Plus |
CG9248-PC | 494 | CG9248-PC | 33..493 | 42..487 | 1018 | 45.3 | Plus |
CG9248-PA | 494 | CG9248-PA | 33..493 | 42..487 | 1018 | 45.3 | Plus |
CG9248-PB | 494 | CG9248-PB | 33..493 | 42..487 | 1018 | 45.3 | Plus |