Clone BS08641 Report

Search the DGRC for BS08641

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG43345-RB
Protein status:BS08641.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08641.3prime Sequence

846 bp (768 high quality bases) assembled on 2006-01-11

> BS08641.3prime
ATGGTCTAGAAAGCTTTCAAATTCGTAAAATTGGTTTCAGTGGCAATGCA
TAGGGACTAAACCAGTCCCGCAGAAAAATTGCCATTAAATCTGTACGGAG
ACTATTATTGTTGTATTCCATGTCCTGGAGTACTAATCCAATGCCAGCTG
AGTAAGTAAAATGCTCTCCCGAAAAACTGGAGGTGCCTATAAAGGCAACC
CTATCGGTGACTAAGTACGAGTTGCAGTTAACTCTACCGCCGGAAATCCT
CTCCAGTTCATTTGTGGTGGGTACAACAAAACGTCGCATTTGTATATCTA
CTCCTTCCGTAATTTTGTCGAGCGCTTGAAGGGACCTCAAGAAGTGATCC
TCGCTGGGATCCGAATACTTCCACCATGAAATAAGCACCTTAATGGCCAC
ACCGCGTTCCAAGGCAGCTCTACGCAGGGCATTGTCTATGACCGGCCAGT
ACTCCAATTTGTTACTCCGTCTTAGCCGAGGAGAGTACTCCATTAAGGAG
AGGTATATAACGTCTGTGGCCTTGTCGATAGCCTCTAAAATGGCATCTAG
CTCTCGGGTCCTTCCAGTAGCGATCAACTCTGGTGGTGATGTGGATAAAT
AAGCTCTCATTGTATGTTTTTTGTTGATGTTTAGCAAAAGCGGTCTTCTT
TGATTGATGTGCGTGTGGTATATCCACGGCCAGCTCTTTGGCACTTCATT
GCTGCCCAGGTACCAATACGCCTTGAAGATCTTTCCCAGATCTAGAGCAA
GATGGGGACAATTTCTGGCCAGCACACCTAATTCCTTGCGTTGCGTCAGT
GATCGCCAGTCCATGCTAGCTGTGCCCAAGTAGAAGTGCTCCCCCG

BS08641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9243-PA 1482 CG9243-RA 655..1482 844..17 4115 99.8 Minus
CG9243-PB 1725 CG9243-RB 655..1261 844..238 3010 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-RC 2482 CG43346-RC 1022..1850 844..16 4130 99.9 Minus
CG43346-RA 2250 CG9243-RB 790..1618 844..16 4130 99.9 Minus
CG43345-RC 2482 CG43345-RC 1022..1850 844..16 4130 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167003..21167560 287..844 2775 99.8 Plus
2L 23513712 2L 21166678..21166949 16..287 1360 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:42:25 has no hits.

BS08641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:08 Download gff for BS08641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 654..1482 17..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:34 Download gff for BS08641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 654..1482 17..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:43 Download gff for BS08641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 789..1629 7..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:38 Download gff for BS08641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 1021..1861 7..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:38 Download gff for BS08641.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21166667..21166948 7..286 98 <- Plus
2L 21167003..21167561 287..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:43 Download gff for BS08641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21166667..21166948 7..286 98 <- Plus
arm_2L 21167003..21167561 287..846 99   Plus

BS08641.5prime Sequence

859 bp (816 high quality bases) assembled on 2006-01-11

> BS08641.5prime
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGNGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGCACATC

BS08641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9243-PB 1725 CG9243-RB 1..843 17..859 4196 99.8 Plus
CG9243-PA 1482 CG9243-RA 1..843 17..859 4196 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-RC 2482 CG43346-RC 367..1210 16..859 4209 99.9 Plus
CG43346-RA 2250 CG9243-RB 135..978 16..859 4209 99.9 Plus
CG43345-RC 2482 CG43345-RC 367..1210 16..859 4209 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167372..21168215 859..16 4209 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 02:42:06 has no hits.

BS08641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:09 Download gff for BS08641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:35 Download gff for BS08641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:04 Download gff for BS08641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 135..978 16..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:21 Download gff for BS08641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 367..1210 16..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:21 Download gff for BS08641.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21167372..21168215 16..859 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:04 Download gff for BS08641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21167372..21168215 16..859 99   Minus

BS08641.complete Sequence

1514 bp (1514 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636217

> BS08641.complete
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGGGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGCACATCAATCAAAGAAGACCGCTTTTGCTAAACATCAACAAAAAACA
TACAATGAGAGCTTATTTATCCACATCACCACCAGAGTTGATCGCTACTG
GAAGGACCCGAGAGCTAGATGCCATTTTAGAGGCTATCGACAAGGCCACA
GACGTTATATACCTCTCCTTAATGGAGTACTCTCCTCGGCTAAGACGGAG
TAACAAATTGGAGTACTGGCCGGTCATAGACAATGCCCTGCGTAGAGCTG
CCTTGGAACGCGGTGTGGCCATTAAGGTGCTTATTTCATGGTGGAAGTAT
TCGGATCCCAGCGAGGATCACTTCTTGAGGTCCCTTCAAGCGCTCGACAA
AATTACGGAAGGAGTAGATATACAAATGCGACGTTTTGTTGTACCCACCA
CAAATGAACTGGAGAGGATTTCCGGCGGTAGAGTTAACTGCAACTCGTAC
TTAGTCACCGATAGGGTTGCCTTTATAGGCACCTCCAGTTTTTCGGGAGA
GCATTTTACTTACTCAGCTGGCATTGGATTAGTACTCCAGGACATGGAAT
ACAACAATAATAGTCTCCGTACAGATTTAATGGCAATTTTTCTGCGGGAC
TGGTTTAGTCCCTATGCATTGCCACTGAAACCAATTTTACGAATTTGAAA
GCTTTCTAGACCAT

BS08641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG43345-RC 1482 CG43345-PC 1..1482 17..1498 7410 100 Plus
CG43345-RB 1482 CG43345-PB 1..1482 17..1498 7410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-RC 2482 CG43346-RC 367..1850 16..1499 7420 100 Plus
CG43346-RA 2250 CG9243-RB 135..1618 16..1499 7420 100 Plus
CG43345-RC 2482 CG43345-RC 367..1850 16..1499 7420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167003..21168215 1228..16 6065 100 Minus
2L 23513712 2L 21166678..21166949 1499..1228 1360 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:40:35 has no hits.

BS08641.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:11 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 1..1482 17..1498 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:51 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 130..1624 16..1508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:13 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 136..1616 17..1497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:12 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 130..1624 16..1508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:33 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 368..1848 17..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:33 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21166680..21166948 1229..1497 100 <- Minus
2L 21167003..21168214 17..1228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:13 Download gff for BS08641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21166680..21166948 1229..1497 100 <- Minus
arm_2L 21167003..21168214 17..1228 100   Minus

BS08641.pep Sequence

Translation from 16 to 1497

> BS08641.pep
MSERRVVHEIPGEYQPVPRAPEEPTPLTTSCCRRPNCGLGLQDERNICSC
KHGYIIPVLILFVLVMIVLLLPWETYHRNENGNSPVPVEKPLPCQLELVE
SLPLGLNYSQWQSHPQLSSTFDAWQLLLGRAKASLDIVSPHWTLRGLDVN
DSSTGPGDQLFQQLLSNGDAGRPKLRVRIVVNRSHDSLWHADARILANYG
AADVVGINFLHSKLWLVDGEHFYLGTASMDWRSLTQRKELGVLARNCPHL
ALDLGKIFKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINKKHTMRAY
LSTSPPELIATGRTRELDAILEAIDKATDVIYLSLMEYSPRLRRSNKLEY
WPVIDNALRRAALERGVAIKVLISWWKYSDPSEDHFLRSLQALDKITEGV
DIQMRRFVVPTTNELERISGGRVNCNSYLVTDRVAFIGTSSFSGEHFTYS
AGIGLVLQDMEYNNNSLRTDLMAIFLRDWFSPYALPLKPILRI*

BS08641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG43345-PC 493 CG43345-PC 1..493 1..493 2622 100 Plus
CG43345-PB 493 CG9243-PA 1..493 1..493 2622 100 Plus
CG9248-PC 494 CG9248-PC 33..493 42..487 1018 45.3 Plus
CG9248-PA 494 CG9248-PA 33..493 42..487 1018 45.3 Plus
CG9248-PB 494 CG9248-PB 33..493 42..487 1018 45.3 Plus