Clone Sequence Records
BS08642.3prime Sequence
835 bp (769 high quality bases) assembled on 2006-01-11
> BS08642.3prime
ATGGTCTAGAAAGCTTTTATCCATCGGACAGGGCGGGCGTTACCCATCCG
TACTTCTCGTGCGTCTTCACCAGCGAACGGAACGACTCCTCAGCCTGGCG
CCGAGTGAACTCCTTTGTACTCTTTGGCTTGCGCGCGATCCTGCCTTGGC
CCTTAACCACGCTGGCTGCGAACTGCATGATGACCGCCTCCACCGTATAG
GCACTGGCCCATCCGCGTGGGGTTAAGAGCTCCATGCAGATGGCGCCACC
CTCCATCACGTAACCCTTCTCGATGTGCGGCTCCACCACGCGCATAAAGG
GCGGGGCAAAGGGGAAGTTGTCGGGGAAACTCAGGTGCAACAGTATGGCC
GGCACACCCATCTCGGCCATATCTCTGGCCAGCGGCGAGTCGGGATCAAT
CACGTGCAGGCGTACGTGCCACTCGAATAGACTATCGTTGACGAGTTCCA
CCGTGAAGACAGCATCGTTCTTGGCCTGCAGTCGCTCCATTTCGCGGTAT
TCTTTCATCAGGCGACGGGTTCGAATCGTATGATCCGGAGCCGCCACCAG
TTGGCGTTCCGTTGTCGGCGCCACCTTGTGATCTTGTCGTCGCCGCTTGC
CTGGTGAATCCCACACAGCTTGCTCGGCTGCCATTCGAACTACGGCATTT
TTTGCGGCACCGGATGATCCCGACGATCCTACTGCTCCACCGGCCACGGC
GACGCCTCCTGCCGAAGAGGGTGCTGCTGCTCCATCGTGATTGTTGTTAT
TATTATTATTATTATTATTGTTGTTTATATTCGGGCTGCTGCCAGTGGCG
CCATCGACCTTGTCATTGTTGTTATTATTATTTAT
BS08642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-PB | 921 | CG4502-RB | 103..921 | 835..17 | 4095 | 100 | Minus |
CG4502-PA | 921 | CG4502-RA | 103..921 | 835..17 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 2078 | CG4502-RA | 612..1430 | 835..17 | 4095 | 100 | Minus |
CG4502-RB | 2027 | CG4502-RB | 561..1379 | 835..17 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7195702..7196053 | 101..452 | 1760 | 100 | Plus |
2L | 23513712 | 2L | 7196312..7196572 | 575..835 | 1305 | 100 | Plus |
2L | 23513712 | 2L | 7196110..7196235 | 450..575 | 630 | 100 | Plus |
2L | 23513712 | 2L | 7195556..7195641 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:08:40 has no hits.
BS08642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:10 Download gff for
BS08642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 103..921 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:37 Download gff for
BS08642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 103..921 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:00 Download gff for
BS08642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 561..1381 | 13..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:36 Download gff for
BS08642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 561..1381 | 13..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:36 Download gff for
BS08642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7196313..7196572 | 576..835 | 100 | | Plus |
2L | 7196112..7196235 | 452..575 | 100 | <- | Plus |
2L | 7195552..7195640 | 13..101 | 97 | <- | Plus |
2L | 7195703..7196052 | 102..451 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:00 Download gff for
BS08642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7195552..7195640 | 13..101 | 97 | <- | Plus |
arm_2L | 7195703..7196052 | 102..451 | 100 | <- | Plus |
arm_2L | 7196112..7196235 | 452..575 | 100 | <- | Plus |
arm_2L | 7196313..7196572 | 576..835 | 100 | | Plus |
BS08642.5prime Sequence
842 bp (799 high quality bases) assembled on 2006-01-11
> BS08642.5prime
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGG
BS08642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-PB | 921 | CG4502-RB | 1..826 | 17..842 | 4130 | 100 | Plus |
CG4502-PA | 921 | CG4502-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 2078 | CG4502-RA | 510..1335 | 17..842 | 4130 | 100 | Plus |
CG4502-RB | 2027 | CG4502-RB | 459..1284 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7196312..7196674 | 379..17 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7195713..7196053 | 842..502 | 1705 | 100 | Minus |
2L | 23513712 | 2L | 7196110..7196235 | 504..379 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:51:02 has no hits.
BS08642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:11 Download gff for
BS08642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:38 Download gff for
BS08642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:52 Download gff for
BS08642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 451..1284 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:14 Download gff for
BS08642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 451..1284 | 9..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:14 Download gff for
BS08642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7195713..7196052 | 503..842 | 100 | <- | Minus |
2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
2L | 7196313..7196682 | 9..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:52 Download gff for
BS08642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7195713..7196052 | 503..842 | 100 | <- | Minus |
arm_2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
arm_2L | 7196313..7196682 | 9..378 | 99 | | Minus |
BS08642.complete Sequence
953 bp (953 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636218
> BS08642.complete
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGGAGTTCACT
CGGCGCCAGGCTGAGGAGTCGTTCCGTTCGCTGGTGAAGACGCACGAGAA
GTACGGATGGGTAACGCCCGCCCTGTCCGATGGATAAAAGCTTTCTAGAC
CAT
BS08642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 921 | CG4502-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
CG4502-RB | 921 | CG4502-PB | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 2078 | CG4502-RA | 510..1430 | 17..937 | 4605 | 100 | Plus |
CG4502-RB | 2027 | CG4502-RB | 459..1379 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7196312..7196674 | 379..17 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7195702..7196053 | 853..502 | 1760 | 100 | Minus |
2L | 23513712 | 2L | 7196110..7196235 | 504..379 | 630 | 100 | Minus |
2L | 23513712 | 2L | 7195556..7195641 | 937..852 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:07:38 has no hits.
BS08642.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:13 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:53 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RA | 497..1427 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:00 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 459..1377 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:13 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RA | 497..1427 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:21 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 459..1377 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:21 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
2L | 7195558..7195640 | 853..935 | 100 | <- | Minus |
2L | 7195703..7196052 | 503..852 | 100 | <- | Minus |
2L | 7196313..7196674 | 17..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:00 Download gff for
BS08642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7195558..7195640 | 853..935 | 100 | <- | Minus |
arm_2L | 7195703..7196052 | 503..852 | 100 | <- | Minus |
arm_2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
arm_2L | 7196313..7196674 | 17..378 | 100 | | Minus |
BS08642.pep Sequence
Translation from 16 to 936
> BS08642.pep
MSSRSKERVVTAFRKIFHKSSNNNNNNNNNHNNNINNNNNNDKVDGATGS
SPNINNNNNNNNNNNNHDGAAAPSSAGGVAVAGGAVGSSGSSGAAKNAVV
RMAAEQAVWDSPGKRRRQDHKVAPTTERQLVAAPDHTIRTRRLMKEYREM
ERLQAKNDAVFTVELVNDSLFEWHVRLHVIDPDSPLARDMAEMGVPAILL
HLSFPDNFPFAPPFMRVVEPHIEKGYVMEGGAICMELLTPRGWASAYTVE
AVIMQFAASVVKGQGRIARKPKSTKEFTRRQAEESFRSLVKTHEKYGWVT
PALSDG*
BS08642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-PA | 306 | CG4502-PA | 1..306 | 1..306 | 1601 | 100 | Plus |
CG4502-PB | 306 | CG4502-PB | 1..306 | 1..306 | 1601 | 100 | Plus |
CG2924-PD | 397 | CG2924-PD | 224..397 | 140..306 | 452 | 51.7 | Plus |
CG2924-PB | 397 | CG2924-PB | 224..397 | 140..306 | 452 | 51.7 | Plus |
CG2924-PE | 397 | CG2924-PE | 224..397 | 140..306 | 452 | 51.7 | Plus |