Clone BS08642 Report

Search the DGRC for BS08642

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4502-RA
Protein status:BS08642.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08642.3prime Sequence

835 bp (769 high quality bases) assembled on 2006-01-11

> BS08642.3prime
ATGGTCTAGAAAGCTTTTATCCATCGGACAGGGCGGGCGTTACCCATCCG
TACTTCTCGTGCGTCTTCACCAGCGAACGGAACGACTCCTCAGCCTGGCG
CCGAGTGAACTCCTTTGTACTCTTTGGCTTGCGCGCGATCCTGCCTTGGC
CCTTAACCACGCTGGCTGCGAACTGCATGATGACCGCCTCCACCGTATAG
GCACTGGCCCATCCGCGTGGGGTTAAGAGCTCCATGCAGATGGCGCCACC
CTCCATCACGTAACCCTTCTCGATGTGCGGCTCCACCACGCGCATAAAGG
GCGGGGCAAAGGGGAAGTTGTCGGGGAAACTCAGGTGCAACAGTATGGCC
GGCACACCCATCTCGGCCATATCTCTGGCCAGCGGCGAGTCGGGATCAAT
CACGTGCAGGCGTACGTGCCACTCGAATAGACTATCGTTGACGAGTTCCA
CCGTGAAGACAGCATCGTTCTTGGCCTGCAGTCGCTCCATTTCGCGGTAT
TCTTTCATCAGGCGACGGGTTCGAATCGTATGATCCGGAGCCGCCACCAG
TTGGCGTTCCGTTGTCGGCGCCACCTTGTGATCTTGTCGTCGCCGCTTGC
CTGGTGAATCCCACACAGCTTGCTCGGCTGCCATTCGAACTACGGCATTT
TTTGCGGCACCGGATGATCCCGACGATCCTACTGCTCCACCGGCCACGGC
GACGCCTCCTGCCGAAGAGGGTGCTGCTGCTCCATCGTGATTGTTGTTAT
TATTATTATTATTATTATTGTTGTTTATATTCGGGCTGCTGCCAGTGGCG
CCATCGACCTTGTCATTGTTGTTATTATTATTTAT

BS08642.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PB 921 CG4502-RB 103..921 835..17 4095 100 Minus
CG4502-PA 921 CG4502-RA 103..921 835..17 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2078 CG4502-RA 612..1430 835..17 4095 100 Minus
CG4502-RB 2027 CG4502-RB 561..1379 835..17 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7195702..7196053 101..452 1760 100 Plus
2L 23513712 2L 7196312..7196572 575..835 1305 100 Plus
2L 23513712 2L 7196110..7196235 450..575 630 100 Plus
2L 23513712 2L 7195556..7195641 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:08:40 has no hits.

BS08642.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:10 Download gff for BS08642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 103..921 17..835 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:37 Download gff for BS08642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 103..921 17..835 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:00 Download gff for BS08642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 561..1381 13..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:36 Download gff for BS08642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 561..1381 13..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:36 Download gff for BS08642.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7196313..7196572 576..835 100   Plus
2L 7196112..7196235 452..575 100 <- Plus
2L 7195552..7195640 13..101 97 <- Plus
2L 7195703..7196052 102..451 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:00 Download gff for BS08642.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7195552..7195640 13..101 97 <- Plus
arm_2L 7195703..7196052 102..451 100 <- Plus
arm_2L 7196112..7196235 452..575 100 <- Plus
arm_2L 7196313..7196572 576..835 100   Plus

BS08642.5prime Sequence

842 bp (799 high quality bases) assembled on 2006-01-11

> BS08642.5prime
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGG

BS08642.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PB 921 CG4502-RB 1..826 17..842 4130 100 Plus
CG4502-PA 921 CG4502-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2078 CG4502-RA 510..1335 17..842 4130 100 Plus
CG4502-RB 2027 CG4502-RB 459..1284 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7196312..7196674 379..17 1815 100 Minus
2L 23513712 2L 7195713..7196053 842..502 1705 100 Minus
2L 23513712 2L 7196110..7196235 504..379 630 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:51:02 has no hits.

BS08642.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:11 Download gff for BS08642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:38 Download gff for BS08642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:52 Download gff for BS08642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 451..1284 9..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:14 Download gff for BS08642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 451..1284 9..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:14 Download gff for BS08642.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7195713..7196052 503..842 100 <- Minus
2L 7196112..7196235 379..502 100 <- Minus
2L 7196313..7196682 9..378 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:52 Download gff for BS08642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7195713..7196052 503..842 100 <- Minus
arm_2L 7196112..7196235 379..502 100 <- Minus
arm_2L 7196313..7196682 9..378 99   Minus

BS08642.complete Sequence

953 bp (953 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636218

> BS08642.complete
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGGAGTTCACT
CGGCGCCAGGCTGAGGAGTCGTTCCGTTCGCTGGTGAAGACGCACGAGAA
GTACGGATGGGTAACGCCCGCCCTGTCCGATGGATAAAAGCTTTCTAGAC
CAT

BS08642.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 921 CG4502-PA 1..921 17..937 4605 100 Plus
CG4502-RB 921 CG4502-PB 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2078 CG4502-RA 510..1430 17..937 4605 100 Plus
CG4502-RB 2027 CG4502-RB 459..1379 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7196312..7196674 379..17 1815 100 Minus
2L 23513712 2L 7195702..7196053 853..502 1760 100 Minus
2L 23513712 2L 7196110..7196235 504..379 630 100 Minus
2L 23513712 2L 7195556..7195641 937..852 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:07:38 has no hits.

BS08642.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:13 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:53 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 497..1427 9..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:00 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 459..1377 17..935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:13 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 497..1427 9..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:21 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 459..1377 17..935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:21 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7196112..7196235 379..502 100 <- Minus
2L 7195558..7195640 853..935 100 <- Minus
2L 7195703..7196052 503..852 100 <- Minus
2L 7196313..7196674 17..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:00 Download gff for BS08642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7195558..7195640 853..935 100 <- Minus
arm_2L 7195703..7196052 503..852 100 <- Minus
arm_2L 7196112..7196235 379..502 100 <- Minus
arm_2L 7196313..7196674 17..378 100   Minus

BS08642.pep Sequence

Translation from 16 to 936

> BS08642.pep
MSSRSKERVVTAFRKIFHKSSNNNNNNNNNHNNNINNNNNNDKVDGATGS
SPNINNNNNNNNNNNNHDGAAAPSSAGGVAVAGGAVGSSGSSGAAKNAVV
RMAAEQAVWDSPGKRRRQDHKVAPTTERQLVAAPDHTIRTRRLMKEYREM
ERLQAKNDAVFTVELVNDSLFEWHVRLHVIDPDSPLARDMAEMGVPAILL
HLSFPDNFPFAPPFMRVVEPHIEKGYVMEGGAICMELLTPRGWASAYTVE
AVIMQFAASVVKGQGRIARKPKSTKEFTRRQAEESFRSLVKTHEKYGWVT
PALSDG*

BS08642.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PA 306 CG4502-PA 1..306 1..306 1601 100 Plus
CG4502-PB 306 CG4502-PB 1..306 1..306 1601 100 Plus
CG2924-PD 397 CG2924-PD 224..397 140..306 452 51.7 Plus
CG2924-PB 397 CG2924-PB 224..397 140..306 452 51.7 Plus
CG2924-PE 397 CG2924-PE 224..397 140..306 452 51.7 Plus