Clone Sequence Records
BS08643.3prime Sequence
498 bp (497 high quality bases) assembled on 2006-01-11
> BS08643.3prime
ATGGTCTAGAAAGCTTTTAATCGATATACTGCGCCAGCCAACGGAAACCC
TCGCCGTAGCCCTGTCGCTTCAGCACGGAGCACATGAACAATTCCAGAGG
ACGGCCGGGCAAATCGGCGCGTGCAACTTTGCCCTTGCCGGTTGTTAGCT
GATACAGTCCGAACACGTTTCTCAGCTCATCCTCGCTAGCCGCGCCGGGC
TTATCGATTTTGTTGCCCAATATGAGCACGGGGCAGTTGGACAGCGCCTC
ATCCGTGAGCAGCGAATCCAGCTCGTTTTTGCTCTCCTGGAAGCGGCCAC
GGTCCCAGGCGTCTATTAAGAAAACGATGGCGTCCACAGCAGGGAAGTAG
TCCTTCCAGACGCGTCGTGCCTGAGTGTGGCCACCCAAGTCGAATGTAGT
GAAGCGCATGTTGCCGATGGACAGCTCCTCGGATGTTGGATGCAGTGTGG
GCACATGCTGCGCCAGCTTATCATCTTTGAGCATGTCGACTGATAACT
BS08643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 115..582 | 484..17 | 2340 | 100 | Minus |
CG7073-PB | 468 | sar1-RB | 1..468 | 484..17 | 2340 | 100 | Minus |
CG7073-PD | 582 | sar1-RD | 115..582 | 484..17 | 2340 | 100 | Minus |
CG7073-PC | 582 | sar1-RC | 115..582 | 484..17 | 2340 | 100 | Minus |
CG7073-PE | 582 | sar1-RE | 115..582 | 484..17 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 227..694 | 484..17 | 2340 | 100 | Minus |
Sar1-RC | 1801 | CG7073-RC | 576..1043 | 484..17 | 2340 | 100 | Minus |
Sar1-RD | 1552 | CG7073-RD | 327..794 | 484..17 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 370..133 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 22359835..22359953 | 135..17 | 595 | 100 | Minus |
3R | 32079331 | 3R | 22358563..22358628 | 435..370 | 330 | 100 | Minus |
3R | 32079331 | 3R | 22358443..22358491 | 484..436 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:03:14 has no hits.
BS08643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:12 Download gff for
BS08643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-PA | 115..582 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:39 Download gff for
BS08643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 115..582 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:18 Download gff for
BS08643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 278..745 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:34 Download gff for
BS08643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 327..794 | 17..484 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:34 Download gff for
BS08643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22358443..22358491 | 436..484 | 100 | -> | Minus |
3R | 22358563..22358628 | 370..435 | 100 | -> | Minus |
3R | 22359525..22359760 | 134..369 | 100 | -> | Minus |
3R | 22359837..22359953 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:18 Download gff for
BS08643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18184165..18184213 | 436..484 | 100 | -> | Minus |
arm_3R | 18184285..18184350 | 370..435 | 100 | -> | Minus |
arm_3R | 18185247..18185482 | 134..369 | 100 | -> | Minus |
arm_3R | 18185559..18185675 | 17..133 | 100 | | Minus |
BS08643.5prime Sequence
498 bp (497 high quality bases) assembled on 2006-01-11
> BS08643.5prime
GAAGTTATCAGTCGACATGCTCAAAGATGATAAGCTGGCGCAGCATGTGC
CCACACTGCATCCAACATCCGAGGAGCTGTCCATCGGCAACATGCGCTTC
ACTACATTCGACTTGGGTGGCCACACTCAGGCACGACGCGTCTGGAAGGA
CTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAATAGACGCCTGGGACC
GTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCTCACGGAT
GAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGCAACAAAATCGATAA
GCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGACTGTATC
AGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCCCGGCCGT
CCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCTACGGCGA
GGGTTTCCGTTGGCTGGCGCAGTATATCGATTAAAAGCTTTCTAGACC
BS08643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 115..582 | 17..484 | 2340 | 100 | Plus |
CG7073-PB | 468 | sar1-RB | 1..468 | 17..484 | 2340 | 100 | Plus |
CG7073-PD | 582 | sar1-RD | 115..582 | 17..484 | 2340 | 100 | Plus |
CG7073-PC | 582 | sar1-RC | 115..582 | 17..484 | 2340 | 100 | Plus |
CG7073-PE | 582 | sar1-RE | 115..582 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 227..694 | 17..484 | 2340 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 576..1043 | 17..484 | 2340 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 327..794 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 131..368 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359953 | 366..484 | 595 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 66..131 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22358443..22358491 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:13:24 has no hits.
BS08643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:13 Download gff for
BS08643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-PA | 115..582 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:41 Download gff for
BS08643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 115..582 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:06 Download gff for
BS08643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 278..745 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:23 Download gff for
BS08643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 327..794 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:23 Download gff for
BS08643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22358443..22358491 | 17..65 | 100 | -> | Plus |
3R | 22358563..22358628 | 66..131 | 100 | -> | Plus |
3R | 22359525..22359760 | 132..367 | 100 | -> | Plus |
3R | 22359837..22359953 | 368..484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:06 Download gff for
BS08643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18184165..18184213 | 17..65 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 66..131 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 132..367 | 100 | -> | Plus |
arm_3R | 18185559..18185675 | 368..484 | 100 | | Plus |
BS08643.complete Sequence
500 bp (500 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636219
> BS08643.complete
GAAGTTATCAGTCGACATGCTCAAAGATGATAAGCTGGCGCAGCATGTGC
CCACACTGCATCCAACATCCGAGGAGCTGTCCATCGGCAACATGCGCTTC
ACTACATTCGACTTGGGTGGCCACACTCAGGCACGACGCGTCTGGAAGGA
CTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAATAGACGCCTGGGACC
GTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCTCACGGAT
GAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGCAACAAAATCGATAA
GCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGACTGTATC
AGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCCCGGCCGT
CCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCTACGGCGA
GGGTTTCCGTTGGCTGGCGCAGTATATCGATTAAAAGCTTTCTAGACCAT
BS08643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 582 | CG7073-PE | 115..582 | 17..484 | 2340 | 100 | Plus |
Sar1-RC | 582 | CG7073-PC | 115..582 | 17..484 | 2340 | 100 | Plus |
Sar1-RD | 582 | CG7073-PD | 115..582 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 227..694 | 17..484 | 2340 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 576..1043 | 17..484 | 2340 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 327..794 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 131..368 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359953 | 366..484 | 595 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 66..131 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22358443..22358491 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:40:07 has no hits.
BS08643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:35 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 115..582 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:43 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 391..858 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:06 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 278..743 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:35 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 391..858 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:07 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 327..792 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:07 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22359525..22359760 | 132..367 | 100 | -> | Plus |
3R | 22359837..22359951 | 368..482 | 100 | | Plus |
3R | 22358443..22358491 | 17..65 | 100 | -> | Plus |
3R | 22358563..22358628 | 66..131 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:06 Download gff for
BS08643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18185247..18185482 | 132..367 | 100 | -> | Plus |
arm_3R | 18184165..18184213 | 17..65 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 66..131 | 100 | -> | Plus |
arm_3R | 18185559..18185673 | 368..482 | 100 | | Plus |
BS08643.pep Sequence
Translation from 16 to 483
> BS08643.pep
MLKDDKLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAV
DAIVFLIDAWDRGRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAAS
EDELRNVFGLYQLTTGKGKVARADLPGRPLELFMCSVLKRQGYGEGFRWL
AQYID*
BS08643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-PE | 193 | CG7073-PE | 39..193 | 1..155 | 819 | 100 | Plus |
Sar1-PC | 193 | CG7073-PC | 39..193 | 1..155 | 819 | 100 | Plus |
Sar1-PD | 193 | CG7073-PD | 39..193 | 1..155 | 819 | 100 | Plus |
Sar1-PA | 193 | CG7073-PA | 39..193 | 1..155 | 819 | 100 | Plus |
Arl1-PA | 180 | CG6025-PA | 45..173 | 11..151 | 200 | 30.5 | Plus |