Clone Sequence Records
BS08647.3prime Sequence
880 bp (801 high quality bases) assembled on 2006-01-11
> BS08647.3prime
ATGGTCTAGAAAGCTTTTATTGTACTACTTGCCGAAGGTCCACCTCCTGC
TCGAAGAACTCCTCCTCCTCGCTGTCATCGGACTCCGACTCCGGCTCCGG
CTCCGAGTTGCGGGCGGCCTGTTGATAGCGGAACTGCGAGTTGGGCAGCG
GCAGTAACTCCGCTGGTTTATCCTCCTCAGGTTCCTCCACTGATTCCTCC
TCGGGCGCCGCATCCATGGACTCCTCGATGGTGCGCGAGTGGTCCTCGAT
CTCTTCGTCGTCCAGATGCGGTGCTCCATTGGCGAACGAGGCGAAGCGCA
AAGGATCACGCAGTTTGCCCATCACCGCCCACTGCTTGCACTCCGGACTG
TTGACGTACTTGCGCAGGTCCGCCAGCGATTTCGAGGTCTCCACGGCCGT
CTGCTGTTCGTACTCCTCCTGGGTGAGCATGCGCCTCTTTAGCGGAAAAC
GGCGGCGATACATGAACTTGATCTGGTTCGTCCACGAAATGGGGAAGTAG
TGGGCCACAAAGACCAGCACCATGATGAAGATCACGGCGCTGGTGTGCCA
GCTGCTGAAGTAAGCCATAACGGCGCCAATGGCCTGCAGCACCCACATGA
CGATGGTTTGCGATCGAGGATTCTTGGGCGGACCAATGCGATAGCAGATC
AGGAACGAGATCAGTCCGGTGATCACCAGATAGCCCAGCACATGGTCGCG
GTAGGTGATCAGAATCAAACGCAGATTGTCCGCCAGCTGTTTGATCACAT
AGAAGCCAATGGTCCAGCCGCCAATTAGGACGCCATACATCATGGTACGT
CGCGGAAAGAGTTTGGCGGCCAAATAGATGACCACCAGCAGGGAGGCGCA
TATGCCGATGACAATGCCGACCAGATAGTA
BS08647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-PA | 1365 | CG9723-RA | 502..1365 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-RA | 1729 | CG9723-RA | 650..1513 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16653436..16654069 | 17..650 | 3170 | 100 | Plus |
| X | 23542271 | X | 16654136..16654366 | 650..880 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:08:43 has no hits.
BS08647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:19 Download gff for
BS08647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-PA | 503..1365 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:48 Download gff for
BS08647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-PA | 503..1365 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:02 Download gff for
BS08647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 651..1513 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:37 Download gff for
BS08647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 651..1513 | 17..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:37 Download gff for
BS08647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16653436..16654068 | 17..649 | 100 | <- | Plus |
| X | 16654136..16654365 | 650..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:02 Download gff for
BS08647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16547469..16548101 | 17..649 | 100 | <- | Plus |
| arm_X | 16548169..16548398 | 650..879 | 100 | | Plus |
BS08647.5prime Sequence
931 bp (773 high quality bases) assembled on 2006-01-11
> BS08647.5prime
GAAGTTATCAGTCGACATGCATTCGGCTGGACTACTGATGCTAACCGTGG
CTGGATATTTCACATCGGGTATTCCTGGCAATACGGCTTCCTCGGACGTC
GCCTACCTGACGCCGGGCACATACATCAATTTGTCGGAGAACATCTTGGG
ACTGCAGACTCTGCGCACGTTCTGCTATCCGGGTAAACGGCTGACGGTGT
CAAGTCTCTTCGAGACTGTGGAGTTCGTCCTGGCCATCGGGAGCGATGAT
TATTCCCAGTACGGTGGGAAGACGCCGGAGGAGGTGTTGCAGCACTACAA
GGACAAGCAATCGCTGTTCAGCATCACCCTGTTCGCGCAGAAGCGCCAGC
TGCTGCAGCTCTCGCCCTTCGAGCAGCAGTGCATCGGGATTTCCTCCCGC
CAGGCGTACACCGTCATTCTGAATAGCATTCCGCTGGATCTGTGGCGTCT
CGCACAGTTCGCCGTCGGCATACTGATCCTCTTCAGCGCCCGGCGGCTAG
CAAAGAACAGTGTGTTCTACTATCTGGTCGGCATTGTCATCGGCATATGC
GCCTCCCTGCTGGTGGTCATCTATTTGGCCGCCAAACTCTTTCCGCGACG
TACCATGATGTATGGCGTCCTAATTGGCGGCTGGACCATTGGCTTCTATG
TGATCAAACAGCTGGCGGACAATCTGCGTTTGATTCTGATCACCTACCGC
GACCATGTGCTGGGCTATCTGGTGATCACCGGACTGATCTCGTTCCTGAT
CTGCTATCGCATTGGTCCGCCCAAGAATCCTCGATCGCAAACCATCGTCA
TGTGGGTGCTGCAGGCCATTGGCGCCGTTATGGCTTACTTCAGCAGCTGG
CACACCAGCGCCGTGATCTTCATCATGGTGCTGGTCTTTGTGGCCCACTA
CTTCCCCATTTCGTGGACAAACCAGATCAAG
BS08647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-PA | 1365 | CG9723-RA | 1..915 | 17..931 | 4550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-RA | 1729 | CG9723-RA | 149..1063 | 17..931 | 4560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16654136..16654867 | 748..17 | 3660 | 100 | Minus |
| X | 23542271 | X | 16653886..16654069 | 931..748 | 905 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:41:44 has no hits.
BS08647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:20 Download gff for
BS08647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:50 Download gff for
BS08647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:03 Download gff for
BS08647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 144..1063 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:17 Download gff for
BS08647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 144..1063 | 8..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:17 Download gff for
BS08647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16653886..16654068 | 749..931 | 99 | <- | Minus |
| X | 16654136..16654872 | 8..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:03 Download gff for
BS08647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16547919..16548101 | 749..931 | 99 | <- | Minus |
| arm_X | 16548169..16548905 | 8..748 | 99 | | Minus |
BS08647.complete Sequence
1397 bp (1397 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636220
> BS08647.complete
GAAGTTATCAGTCGACATGCATTCGGCTGGACTACTGATGCTAACCGTGG
CTGGATATTTCACATCGGGTATTCCTGGCAATACGGCTTCCTCGGACGTC
GCCTACCTGACGCCGGGCACATACATCAATTTGTCGGAGAACATCTTGGG
ACTGCAGACTCTGCGCACGTTCTGCTATCCGGGTAAACGGCTGACGGTGT
CAAGTCTCTTCGAGACTGTGGAGTTCGTCCTGGCCATCGGGAGCGATGAT
TATTCCCAGTACGGTGGGAAGACGCCGGAGGAGGTGTTGCAGCACTACAA
GGACAAGCAATCGCTGTTCAGCATCACCCTGTTCGCGCAGAAGCGCCAGC
TGCTGCAGCTCTCGCCCTTCGAGCAGCAGTGCATCGGGATTTCCTCCCGC
CAGGCGTACACCGTCATTCTGAATAGCATTCCGCTGGATCTGTGGCGTCT
CGCACAGTTCGCCGTCGGCATACTGATCCTCTTCAGCGCCCGGCGGCTAG
CAAAGAACAGTGTGTTCTACTATCTGGTCGGCATTGTCATCGGCATATGC
GCCTCCCTGCTGGTGGTCATCTATTTGGCCGCCAAACTCTTTCCGCGACG
TACCATGATGTATGGCGTCCTAATTGGCGGCTGGACCATTGGCTTCTATG
TGATCAAACAGCTGGCGGACAATCTGCGTTTGATTCTGATCACCTACCGC
GACCATGTGCTGGGCTATCTGGTGATCACCGGACTGATCTCGTTCCTGAT
CTGCTATCGCATTGGTCCGCCCAAGAATCCTCGATCGCAAACCATCGTCA
TGTGGGTGCTGCAGGCCATTGGCGCCGTTATGGCTTACTTCAGCAGCTGG
CACACCAGCGCCGTGATCTTCATCATGGTGCTGGTCTTTGTGGCCCACTA
CTTCCCCATTTCGTGGACGAACCAGATCAAGTTCATGTATCGCCGCCGTT
TTCCGCTAAAGAGGCGCATGCTCACCCAGGAGGAGTACGAACAGCAGACG
GCCGTGGAGACCTCGAAATCGCTGGCGGACCTGCGCAAGTACGTCAACAG
TCCGGAGTGCAAGCAGTGGGCGGTGATGGGCAAACTGCGTGATCCTTTGC
GCTTCGCCTCGTTCGCCAATGGAGCACCGCATCTGGACGACGAAGAGATC
GAGGACCACTCGCGCACCATCGAGGAGTCCATGGATGCGGCGCCCGAGGA
GGAATCAGTGGAGGAACCTGAGGAGGATAAACCAGCGGAGTTACTGCCGC
TGCCCAACTCGCAGTTCCGCTATCAACAGGCCGCCCGCAACTCGGAGCCG
GAGCCGGAGTCGGAGTCCGATGACAGCGAGGAGGAGGAGTTCTTCGAGCA
GGAGGTGGACCTTCGGCAAGTAGTACAATAAAAGCTTTCTAGACCAT
BS08647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-RA | 1365 | CG9723-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-RA | 1729 | CG9723-RA | 149..1513 | 17..1381 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16654136..16654867 | 748..17 | 3660 | 100 | Minus |
| X | 23542271 | X | 16653436..16654069 | 1381..748 | 3170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:35:18 has no hits.
BS08647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:14 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 1..1365 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:54 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 141..1510 | 8..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:41 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 149..1511 | 17..1379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:14 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 141..1510 | 8..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:40 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 149..1511 | 17..1379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:40 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16653438..16654068 | 749..1379 | 100 | <- | Minus |
| X | 16654136..16654867 | 17..748 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:41 Download gff for
BS08647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16547471..16548101 | 749..1379 | 100 | <- | Minus |
| arm_X | 16548169..16548900 | 17..748 | 100 | | Minus |
BS08647.pep Sequence
Translation from 16 to 1380
> BS08647.pep
MHSAGLLMLTVAGYFTSGIPGNTASSDVAYLTPGTYINLSENILGLQTLR
TFCYPGKRLTVSSLFETVEFVLAIGSDDYSQYGGKTPEEVLQHYKDKQSL
FSITLFAQKRQLLQLSPFEQQCIGISSRQAYTVILNSIPLDLWRLAQFAV
GILILFSARRLAKNSVFYYLVGIVIGICASLLVVIYLAAKLFPRRTMMYG
VLIGGWTIGFYVIKQLADNLRLILITYRDHVLGYLVITGLISFLICYRIG
PPKNPRSQTIVMWVLQAIGAVMAYFSSWHTSAVIFIMVLVFVAHYFPISW
TNQIKFMYRRRFPLKRRMLTQEEYEQQTAVETSKSLADLRKYVNSPECKQ
WAVMGKLRDPLRFASFANGAPHLDDEEIEDHSRTIEESMDAAPEEESVEE
PEEDKPAELLPLPNSQFRYQQAARNSEPEPESESDDSEEEEFFEQEVDLR
QVVQ*
BS08647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-PA | 454 | CG9723-PA | 1..454 | 1..454 | 2331 | 100 | Plus |
