Clone BS08648 Report

Search the DGRC for BS08648

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG3209-RB
Protein status:BS08648.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08648.3prime Sequence

871 bp (859 high quality bases) assembled on 2006-01-11

> BS08648.3prime
ATGGTCTAGAAAGCTTTTAGGTGGAGTCCGACTTCAGCCGATTGGCAAAC
TCGACTTGCTGGATCTCCCTCCACTCCTTCTTTGGCTTCATGCGCTTCAG
CTGCCCGTCCCAGACCAGATCAATCAAACCTCCCTGCTTCGCGATGACAC
TCTTCACGCGGTTCGCGAAGTCGATCGCCGACTCTCCCTCCTGCCTGTAC
ATCGGCGGCAGGTACCACACATCGCACACGATGGCCCACGAGGTCATCAT
CATGTACAGATACTGCATCATCGAGTACTTCGCGCTGTTCCAGAAGGCGT
CGCCGAACCTCGGATCGTACTTAATGGCCACCGGGTAGATGACGCCGCCA
ACTTCGAAGCTGCCCTTCTTGAACTGCATGACCGACGTGTTGTTGATGCA
AGTTCCCTCCGGGAAGATAAGGATCGGTGGGTTGTTCGGATCAGACACGT
GCTGCTTCAGTCGCTCGGCCACCAAATGACGATCCTTGGCCTCGCCGCGC
TCAAACCAAATGTGGGGAGATGCGCGGGCCAGAGCTCGTTGCAGCACCCC
CAAAAAGCCGCCATGGCGTTGGCCAATCAGCGAGTAGGTCGAGTCGCACA
TCAGGACCAGCACATCAATGGGACTGGTGTGATTGGCAACACAAATACCG
GATGACGGGCGATTATCCTCATTGTGGTAGGTGATAACCGCCGATATAGC
GCTGGACAAAACGCCGAAGCACATGCCGAGCACCTTGTGCACGAGATCCC
GCTTGAAGGGCCCATCCTTCAAGTATCCCACTGCAGCCGTGCAGACTGTT
AACCACACTACACCAACGAAGCATACCAATACCCGGAGGGGCATCAAGAT
GACGTAACGGATGAAGAAGCC

BS08648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-PB 1377 CG3209-RB 523..1377 871..17 4225 99.7 Minus
CG3209-PA 1614 CG3209-RA 820..1614 811..17 3975 100 Minus
CG3209-PA 1614 CG3209-RA 523..584 871..810 260 96.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1660 CG3209-RB 673..1528 871..16 4250 99.8 Minus
CG3209-RD 1985 CG3209-RD 970..1765 811..16 3980 100 Minus
CG3209-RC 1751 CG3209-RC 958..1531 589..16 2840 99.7 Minus
CG3209-RD 1985 CG3209-RD 673..734 871..810 280 96.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24073028..24073332 320..16 1525 100 Minus
2R 25286936 2R 24072704..24072963 578..319 1300 100 Minus
2R 25286936 2R 24071991..24072224 811..578 1170 100 Minus
2R 25286936 2R 24070183..24070244 871..810 280 96.8 Minus
X 23542271 X 20825153..20825296 427..284 240 77.8 Minus
Blast to na_te.dros performed on 2015-02-10 19:08:37 has no hits.

BS08648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:21 Download gff for BS08648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 523..1377 17..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:51 Download gff for BS08648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 523..1377 17..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:57:59 Download gff for BS08648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 673..1530 11..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:35 Download gff for BS08648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 673..1530 11..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:35 Download gff for BS08648.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24070183..24070242 812..871 96 -> Minus
2R 24071991..24072224 578..811 100 -> Minus
2R 24072705..24072961 321..577 100 -> Minus
2R 24073028..24073334 11..320 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:57:59 Download gff for BS08648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19957706..19957765 812..871 96 -> Minus
arm_2R 19959514..19959747 578..811 100 -> Minus
arm_2R 19960228..19960484 321..577 100 -> Minus
arm_2R 19960551..19960857 11..320 99   Minus

BS08648.5prime Sequence

837 bp (808 high quality bases) assembled on 2006-01-11

> BS08648.5prime
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGGTCCTGATGTGCGACTCGACCTACTCGCTGATTG

BS08648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-PB 1377 CG3209-RB 1..787 17..803 3935 100 Plus
CG3209-PA 1614 CG3209-RA 1..584 17..600 2920 100 Plus
CG3209-PA 1614 CG3209-RA 820..1024 599..803 1025 100 Plus
CG3209-PA 1614 CG3209-RA 1023..1057 803..837 175 100 Plus
CG3209-PB 1377 CG3209-RB 786..820 803..837 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1660 CG3209-RB 151..970 17..837 4080 99.9 Plus
CG3209-RC 1751 CG3209-RC 151..734 17..600 2920 100 Plus
CG3209-RD 1985 CG3209-RD 151..734 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24069998..24070244 354..600 1235 100 Plus
2R 25286936 2R 24071991..24072224 599..833 1125 99.6 Plus
2R 25286936 2R 24069737..24069943 150..356 1035 100 Plus
2R 25286936 2R 24069200..24069334 17..151 675 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:50:51 has no hits.

BS08648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:22 Download gff for BS08648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 1..820 17..837 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:53 Download gff for BS08648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 1..820 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:51 Download gff for BS08648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 146..970 11..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:13 Download gff for BS08648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 146..970 11..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:13 Download gff for BS08648.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24069195..24069334 11..151 97 -> Plus
2R 24069739..24069942 152..355 100 -> Plus
2R 24070000..24070242 356..598 100 -> Plus
2R 24071991..24072225 599..837 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:51 Download gff for BS08648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19956718..19956857 11..151 97 -> Plus
arm_2R 19957262..19957465 152..355 100 -> Plus
arm_2R 19957523..19957765 356..598 100 -> Plus
arm_2R 19959514..19959748 599..837 98   Plus

BS08648.complete Sequence

1409 bp (1409 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636221

> BS08648.complete
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGC
GGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACAT
TTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGGCCGAGCGAC
TGAAGCAGCACGTGTCTGATCCGAACAACCCACCGATCCTTATCTTCCCG
GAGGGAACTTGCATCAACAACACGTCGGTCATGCAGTTCAAGAAGGGCAG
CTTCGAAGTTGGCGGCGTCATCTACCCGGTGGCCATTAAGTACGATCCGA
GGTTCGGCGACGCCTTCTGGAACAGCGCGAAGTACTCGATGATGCAGTAT
CTGTACATGATGATGACCTCGTGGGCCATCGTGTGCGATGTGTGGTACCT
GCCGCCGATGTACAGGCAGGAGGGAGAGTCGGCGATCGACTTCGCGAACC
GCGTGAAGAGTGTCATCGCGAAGCAGGGAGGTTTGATTGATCTGGTCTGG
GACGGGCAGCTGAAGCGCATGAAGCCAAAGAAGGAGTGGAGGGAGATCCA
GCAAGTCGAGTTTGCCAATCGGCTGAAGTCGGACTCCACCTAAAAGCTTT
CTAGACCAT

BS08648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1377 CG3209-PB 1..1377 17..1393 6885 100 Plus
CG3209-RD 1614 CG3209-PD 820..1614 599..1393 3975 100 Plus
CG3209-RD 1614 CG3209-PD 1..584 17..600 2920 100 Plus
CG3209-RC 1380 CG3209-PC 1..584 17..600 2920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1660 CG3209-RB 151..1528 17..1394 6890 100 Plus
CG3209-RD 1985 CG3209-RD 970..1765 599..1394 3980 100 Plus
CG3209-RD 1985 CG3209-RD 151..734 17..600 2920 100 Plus
CG3209-RC 1751 CG3209-RC 151..734 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24073028..24073332 1090..1394 1525 100 Plus
2R 25286936 2R 24072704..24072963 832..1091 1300 100 Plus
2R 25286936 2R 24069998..24070244 354..600 1235 100 Plus
2R 25286936 2R 24071991..24072224 599..832 1170 100 Plus
2R 25286936 2R 24069737..24069943 150..356 1035 100 Plus
2R 25286936 2R 24069200..24069334 17..151 675 100 Plus
X 23542271 X 20825153..20825296 983..1126 240 77.8 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:10 has no hits.

BS08648.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:16 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 1..1377 17..1393 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:56 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 286..1670 11..1399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:37 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 151..1525 17..1391 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:17 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 286..1670 11..1399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:13 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 151..1525 17..1391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:13 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24070000..24070242 356..598 100 -> Plus
2R 24071991..24072224 599..832 100 -> Plus
2R 24072705..24072961 833..1089 100 -> Plus
2R 24073028..24073329 1090..1391 100   Plus
2R 24069200..24069334 17..151 100 -> Plus
2R 24069739..24069942 152..355 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:37 Download gff for BS08648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19956723..19956857 17..151 100 -> Plus
arm_2R 19957262..19957465 152..355 100 -> Plus
arm_2R 19957523..19957765 356..598 100 -> Plus
arm_2R 19959514..19959747 599..832 100 -> Plus
arm_2R 19960228..19960484 833..1089 100 -> Plus
arm_2R 19960551..19960852 1090..1391 100   Plus

BS08648.pep Sequence

Translation from 16 to 1392

> BS08648.pep
MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS
IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP
QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS
WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVVWLTV
CTAAVGYLKDGPFKRDLVHKVLGMCFGVLSSAISAVITYHNEDNRPSSGI
CVANHTSPIDVLVLMCDSTYSLIGQRHGGFLGVLQRALARASPHIWFERG
EAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVGG
VIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMYR
QEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEFA
NRLKSDST*

BS08648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-PB 458 CG3209-PB 1..458 1..458 2411 100 Plus
CG3209-PC 459 CG3209-PC 1..459 1..458 2133 89.3 Plus
CG3209-PD 537 CG3209-PD 274..537 195..458 1410 100 Plus
CG3209-PD 537 CG3209-PD 1..274 1..273 1138 81.8 Plus
CG3209-PE 380 CG3209-PE 1..195 1..195 1004 99.5 Plus
CG3209-PE 380 CG3209-PE 188..380 263..458 999 96.4 Plus
CG15450-PA 407 CG15450-PA 75..407 113..442 909 47.7 Plus