Clone Sequence Records
BS08648.3prime Sequence
871 bp (859 high quality bases) assembled on 2006-01-11
> BS08648.3prime
ATGGTCTAGAAAGCTTTTAGGTGGAGTCCGACTTCAGCCGATTGGCAAAC
TCGACTTGCTGGATCTCCCTCCACTCCTTCTTTGGCTTCATGCGCTTCAG
CTGCCCGTCCCAGACCAGATCAATCAAACCTCCCTGCTTCGCGATGACAC
TCTTCACGCGGTTCGCGAAGTCGATCGCCGACTCTCCCTCCTGCCTGTAC
ATCGGCGGCAGGTACCACACATCGCACACGATGGCCCACGAGGTCATCAT
CATGTACAGATACTGCATCATCGAGTACTTCGCGCTGTTCCAGAAGGCGT
CGCCGAACCTCGGATCGTACTTAATGGCCACCGGGTAGATGACGCCGCCA
ACTTCGAAGCTGCCCTTCTTGAACTGCATGACCGACGTGTTGTTGATGCA
AGTTCCCTCCGGGAAGATAAGGATCGGTGGGTTGTTCGGATCAGACACGT
GCTGCTTCAGTCGCTCGGCCACCAAATGACGATCCTTGGCCTCGCCGCGC
TCAAACCAAATGTGGGGAGATGCGCGGGCCAGAGCTCGTTGCAGCACCCC
CAAAAAGCCGCCATGGCGTTGGCCAATCAGCGAGTAGGTCGAGTCGCACA
TCAGGACCAGCACATCAATGGGACTGGTGTGATTGGCAACACAAATACCG
GATGACGGGCGATTATCCTCATTGTGGTAGGTGATAACCGCCGATATAGC
GCTGGACAAAACGCCGAAGCACATGCCGAGCACCTTGTGCACGAGATCCC
GCTTGAAGGGCCCATCCTTCAAGTATCCCACTGCAGCCGTGCAGACTGTT
AACCACACTACACCAACGAAGCATACCAATACCCGGAGGGGCATCAAGAT
GACGTAACGGATGAAGAAGCC
BS08648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-PB | 1377 | CG3209-RB | 523..1377 | 871..17 | 4225 | 99.7 | Minus |
CG3209-PA | 1614 | CG3209-RA | 820..1614 | 811..17 | 3975 | 100 | Minus |
CG3209-PA | 1614 | CG3209-RA | 523..584 | 871..810 | 260 | 96.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1660 | CG3209-RB | 673..1528 | 871..16 | 4250 | 99.8 | Minus |
CG3209-RD | 1985 | CG3209-RD | 970..1765 | 811..16 | 3980 | 100 | Minus |
CG3209-RC | 1751 | CG3209-RC | 958..1531 | 589..16 | 2840 | 99.7 | Minus |
CG3209-RD | 1985 | CG3209-RD | 673..734 | 871..810 | 280 | 96.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24073028..24073332 | 320..16 | 1525 | 100 | Minus |
2R | 25286936 | 2R | 24072704..24072963 | 578..319 | 1300 | 100 | Minus |
2R | 25286936 | 2R | 24071991..24072224 | 811..578 | 1170 | 100 | Minus |
2R | 25286936 | 2R | 24070183..24070244 | 871..810 | 280 | 96.8 | Minus |
X | 23542271 | X | 20825153..20825296 | 427..284 | 240 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:08:37 has no hits.
BS08648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:21 Download gff for
BS08648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 523..1377 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:51 Download gff for
BS08648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 523..1377 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:57:59 Download gff for
BS08648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 673..1530 | 11..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:35 Download gff for
BS08648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 673..1530 | 11..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:35 Download gff for
BS08648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24070183..24070242 | 812..871 | 96 | -> | Minus |
2R | 24071991..24072224 | 578..811 | 100 | -> | Minus |
2R | 24072705..24072961 | 321..577 | 100 | -> | Minus |
2R | 24073028..24073334 | 11..320 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:57:59 Download gff for
BS08648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19957706..19957765 | 812..871 | 96 | -> | Minus |
arm_2R | 19959514..19959747 | 578..811 | 100 | -> | Minus |
arm_2R | 19960228..19960484 | 321..577 | 100 | -> | Minus |
arm_2R | 19960551..19960857 | 11..320 | 99 | | Minus |
BS08648.5prime Sequence
837 bp (808 high quality bases) assembled on 2006-01-11
> BS08648.5prime
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGGTCCTGATGTGCGACTCGACCTACTCGCTGATTG
BS08648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-PB | 1377 | CG3209-RB | 1..787 | 17..803 | 3935 | 100 | Plus |
CG3209-PA | 1614 | CG3209-RA | 1..584 | 17..600 | 2920 | 100 | Plus |
CG3209-PA | 1614 | CG3209-RA | 820..1024 | 599..803 | 1025 | 100 | Plus |
CG3209-PA | 1614 | CG3209-RA | 1023..1057 | 803..837 | 175 | 100 | Plus |
CG3209-PB | 1377 | CG3209-RB | 786..820 | 803..837 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1660 | CG3209-RB | 151..970 | 17..837 | 4080 | 99.9 | Plus |
CG3209-RC | 1751 | CG3209-RC | 151..734 | 17..600 | 2920 | 100 | Plus |
CG3209-RD | 1985 | CG3209-RD | 151..734 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24069998..24070244 | 354..600 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 24071991..24072224 | 599..833 | 1125 | 99.6 | Plus |
2R | 25286936 | 2R | 24069737..24069943 | 150..356 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 24069200..24069334 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:50:51 has no hits.
BS08648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:22 Download gff for
BS08648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 1..820 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:47:53 Download gff for
BS08648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 1..820 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:51 Download gff for
BS08648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 146..970 | 11..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:13 Download gff for
BS08648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 146..970 | 11..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:13 Download gff for
BS08648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24069195..24069334 | 11..151 | 97 | -> | Plus |
2R | 24069739..24069942 | 152..355 | 100 | -> | Plus |
2R | 24070000..24070242 | 356..598 | 100 | -> | Plus |
2R | 24071991..24072225 | 599..837 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:51 Download gff for
BS08648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19956718..19956857 | 11..151 | 97 | -> | Plus |
arm_2R | 19957262..19957465 | 152..355 | 100 | -> | Plus |
arm_2R | 19957523..19957765 | 356..598 | 100 | -> | Plus |
arm_2R | 19959514..19959748 | 599..837 | 98 | | Plus |
BS08648.complete Sequence
1409 bp (1409 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636221
> BS08648.complete
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGC
GGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACAT
TTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGGCCGAGCGAC
TGAAGCAGCACGTGTCTGATCCGAACAACCCACCGATCCTTATCTTCCCG
GAGGGAACTTGCATCAACAACACGTCGGTCATGCAGTTCAAGAAGGGCAG
CTTCGAAGTTGGCGGCGTCATCTACCCGGTGGCCATTAAGTACGATCCGA
GGTTCGGCGACGCCTTCTGGAACAGCGCGAAGTACTCGATGATGCAGTAT
CTGTACATGATGATGACCTCGTGGGCCATCGTGTGCGATGTGTGGTACCT
GCCGCCGATGTACAGGCAGGAGGGAGAGTCGGCGATCGACTTCGCGAACC
GCGTGAAGAGTGTCATCGCGAAGCAGGGAGGTTTGATTGATCTGGTCTGG
GACGGGCAGCTGAAGCGCATGAAGCCAAAGAAGGAGTGGAGGGAGATCCA
GCAAGTCGAGTTTGCCAATCGGCTGAAGTCGGACTCCACCTAAAAGCTTT
CTAGACCAT
BS08648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1377 | CG3209-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
CG3209-RD | 1614 | CG3209-PD | 820..1614 | 599..1393 | 3975 | 100 | Plus |
CG3209-RD | 1614 | CG3209-PD | 1..584 | 17..600 | 2920 | 100 | Plus |
CG3209-RC | 1380 | CG3209-PC | 1..584 | 17..600 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1660 | CG3209-RB | 151..1528 | 17..1394 | 6890 | 100 | Plus |
CG3209-RD | 1985 | CG3209-RD | 970..1765 | 599..1394 | 3980 | 100 | Plus |
CG3209-RD | 1985 | CG3209-RD | 151..734 | 17..600 | 2920 | 100 | Plus |
CG3209-RC | 1751 | CG3209-RC | 151..734 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24073028..24073332 | 1090..1394 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 24072704..24072963 | 832..1091 | 1300 | 100 | Plus |
2R | 25286936 | 2R | 24069998..24070244 | 354..600 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 24071991..24072224 | 599..832 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 24069737..24069943 | 150..356 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 24069200..24069334 | 17..151 | 675 | 100 | Plus |
X | 23542271 | X | 20825153..20825296 | 983..1126 | 240 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:10 has no hits.
BS08648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:16 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 1..1377 | 17..1393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:56 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 286..1670 | 11..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:37 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 151..1525 | 17..1391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:17 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 286..1670 | 11..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:13 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 151..1525 | 17..1391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:13 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24070000..24070242 | 356..598 | 100 | -> | Plus |
2R | 24071991..24072224 | 599..832 | 100 | -> | Plus |
2R | 24072705..24072961 | 833..1089 | 100 | -> | Plus |
2R | 24073028..24073329 | 1090..1391 | 100 | | Plus |
2R | 24069200..24069334 | 17..151 | 100 | -> | Plus |
2R | 24069739..24069942 | 152..355 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:37 Download gff for
BS08648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19956723..19956857 | 17..151 | 100 | -> | Plus |
arm_2R | 19957262..19957465 | 152..355 | 100 | -> | Plus |
arm_2R | 19957523..19957765 | 356..598 | 100 | -> | Plus |
arm_2R | 19959514..19959747 | 599..832 | 100 | -> | Plus |
arm_2R | 19960228..19960484 | 833..1089 | 100 | -> | Plus |
arm_2R | 19960551..19960852 | 1090..1391 | 100 | | Plus |
BS08648.pep Sequence
Translation from 16 to 1392
> BS08648.pep
MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS
IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP
QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS
WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVVWLTV
CTAAVGYLKDGPFKRDLVHKVLGMCFGVLSSAISAVITYHNEDNRPSSGI
CVANHTSPIDVLVLMCDSTYSLIGQRHGGFLGVLQRALARASPHIWFERG
EAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVGG
VIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMYR
QEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEFA
NRLKSDST*
BS08648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-PB | 458 | CG3209-PB | 1..458 | 1..458 | 2411 | 100 | Plus |
CG3209-PC | 459 | CG3209-PC | 1..459 | 1..458 | 2133 | 89.3 | Plus |
CG3209-PD | 537 | CG3209-PD | 274..537 | 195..458 | 1410 | 100 | Plus |
CG3209-PD | 537 | CG3209-PD | 1..274 | 1..273 | 1138 | 81.8 | Plus |
CG3209-PE | 380 | CG3209-PE | 1..195 | 1..195 | 1004 | 99.5 | Plus |
CG3209-PE | 380 | CG3209-PE | 188..380 | 263..458 | 999 | 96.4 | Plus |
CG15450-PA | 407 | CG15450-PA | 75..407 | 113..442 | 909 | 47.7 | Plus |