Clone Sequence Records
BS08654.3prime Sequence
839 bp (784 high quality bases) assembled on 2006-01-11
> BS08654.3prime
ATGGTCTAGAAAGCTTTTACGACAAGGAGGGCACTGGGATGACGGTCTGG
AAGAGATGCAGTCGCGCATCGGCGTGTCCCAGCTTATTGGTGGCATTGCA
GTAGTAGTCCCCAAAGTCCTCCTCGCCCACGCTATCGATGCGCAGCACAG
AGGTTGTGGTTCCCGAGGAGGAGGCGGTGTTGGCCACCTCGTGGTGCCGG
CTAGACTGCAGGGGCACGCCATTCTTGTGCCAAACTACAGTCGGAGCCGG
GTAGCCCTGCACGGAGCACTCCAGCTCCGCGGAATGGGACACCATTTGGG
CGATCTTGGGCCTCTGGACGGCAATCTGCGGACGGAACTCCACTTCGACC
CGGATCAACCTCTTGTCCGGCTGGCCCTCTCCGTTCTGCGCGATGCAGTA
GTAGCCGCCGCGATCCATCCGGTGCACGGAACGAATCCGGAGAGTTGGTT
CGGCCAGCAAATGGCCACCGGCAGGCATCACTGCATTATGCTCGCGGGCC
CAGGAGATCGTAGGCTTGGGAAAGCCATTGGCATGGCAGGTCAGCTCCAG
ATTCTGTCCCTCTGTCACCAGGGTGCTCTTGGGGGTGTTCTCCGCAATCA
CCGGCGGGGTCTTGATCTGCAGGCTCAGCTTCTTGGTCACCTTCTCCGTG
GCCGAAACAAGCACCTGACACTCGTACGGACCCATGTCACTGACTTCGAT
GTTCTGAATGCGGAAGGTGTAAATGGCACTTCCGGTCTTGGGTCCTTCGG
TGACCGTTACGTTGTACCGCTGGTCGGGCAGACTGAGGATATTCCGCATG
GAGAGCACCACCGAGTTGGTGTCCGACTCGCTGGGACGC
BS08654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2198-PB | 1026 | Ama-RB | 204..1026 | 839..17 | 4115 | 100 | Minus |
CG2198-PA | 1002 | Ama-RA | 180..1002 | 839..17 | 4115 | 100 | Minus |
CG2198-PC | 1002 | Ama-RC | 180..1002 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ama-RC | 1526 | CG2198-RC | 284..1106 | 839..17 | 4115 | 100 | Minus |
Ama-RA | 1542 | CG2198-RA | 300..1122 | 839..17 | 4115 | 100 | Minus |
Ama-RB | 1833 | CG2198-RB | 591..1413 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6764019..6764841 | 839..17 | 4115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:26:59 has no hits.
BS08654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:29 Download gff for
BS08654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-PC | 180..1002 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:02 Download gff for
BS08654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2198-PC | 180..1002 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:46 Download gff for
BS08654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 591..1425 | 4..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:21 Download gff for
BS08654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 591..1425 | 4..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:21 Download gff for
BS08654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6764019..6764853 | 4..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:46 Download gff for
BS08654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2589741..2590575 | 4..839 | 99 | | Minus |
BS08654.5prime Sequence
910 bp (775 high quality bases) assembled on 2006-01-11
> BS08654.5prime
GAAGTTATCAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATAT
TCTGCCTTGCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGC
CAGATCAGCAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAA
CTGCACCGTGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTC
CCAGCGAGTCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTC
AGTCTGCCCGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGAC
CGGAAGTGCCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACA
TGGGTCCGTACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACC
AAGAAGCTGAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACAC
CCCCAAGAGCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCC
ATGCCAATGGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAAT
GCAGTGATGCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGAT
TCGTTCCGTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGA
ACGGAGAGGGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTC
CGTCCGCAGATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCA
TTCCGCGGAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAG
TTTGGCACAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTG
GGCAACACCGCCTCCTCCTCGGGAACACAACCTCTGTGCTGCGCATCGAT
AGCGTGGGCG
BS08654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2198-PB | 1026 | Ama-RB | 22..884 | 14..876 | 4290 | 99.8 | Plus |
CG2198-PA | 1002 | Ama-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG2198-PC | 1002 | Ama-RC | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG2198-PB | 1026 | Ama-RB | 885..919 | 876..910 | 175 | 100 | Plus |
CG2198-PA | 1002 | Ama-RA | 861..895 | 876..910 | 175 | 100 | Plus |
CG2198-PC | 1002 | Ama-RC | 861..895 | 876..910 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ama-RC | 1526 | CG2198-RC | 102..999 | 14..910 | 4450 | 99.8 | Plus |
Ama-RA | 1542 | CG2198-RA | 118..1015 | 14..910 | 4450 | 99.8 | Plus |
Ama-RB | 1833 | CG2198-RB | 409..1306 | 14..910 | 4450 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6763837..6764734 | 14..910 | 4425 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:41:20 has no hits.
BS08654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:31 Download gff for
BS08654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2198-PB | 20..919 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:04 Download gff for
BS08654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2198-PB | 20..919 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:01 Download gff for
BS08654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 407..1306 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:15 Download gff for
BS08654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 407..1306 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:15 Download gff for
BS08654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6763827..6764734 | 5..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:01 Download gff for
BS08654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2589549..2590456 | 5..910 | 99 | | Plus |
BS08654.complete Sequence
1034 bp (1034 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636222
> BS08654.complete
GAAGTTATCAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATAT
TCTGCCTTGCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGC
CAGATCAGCAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAA
CTGCACCGTGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTC
CCAGCGAGTCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTC
AGTCTGCCCGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGAC
CGGAAGTGCCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACA
TGGGTCCGTACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACC
AAGAAGCTGAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACAC
CCCCAAGAGCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCC
ATGCCAATGGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAAT
GCAGTGATGCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGAT
TCGTTCCGTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGA
ACGGAGAGGGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTC
CGTCCGCAGATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCA
TTCCGCGGAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAG
TTTGGCACAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTG
GCCAACACCGCCTCCTCCTCGGGAACCACAACCTCTGTGCTGCGCATCGA
TAGCGTGGGCGAGGAGGACTTTGGGGACTACTACTGCAATGCCACCAATA
AGCTGGGACACGCCGATGCGCGACTGCATCTCTTCCAGACCGTCATCCCA
GTGCCCTCCTTGTCGTAAAAGCTTTCTAGACCAT
BS08654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ama-RB | 1026 | CG2198-PB | 22..1026 | 14..1018 | 5025 | 100 | Plus |
Ama-RC | 1002 | CG2198-PC | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Ama-RA | 1002 | CG2198-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ama-RC | 1526 | CG2198-RC | 102..1106 | 14..1018 | 5025 | 100 | Plus |
Ama-RA | 1542 | CG2198-RA | 118..1122 | 14..1018 | 5025 | 100 | Plus |
Ama-RB | 1833 | CG2198-RB | 409..1413 | 14..1018 | 5025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6763837..6764841 | 14..1018 | 5025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:13 has no hits.
BS08654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:02 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 20..1026 | 9..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:40 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RC | 95..1116 | 6..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:24 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 412..1411 | 17..1016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:02 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RC | 95..1116 | 6..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:11 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ama-RB | 412..1411 | 17..1016 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:11 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6763840..6764839 | 17..1016 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:24 Download gff for
BS08654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2589562..2590561 | 17..1016 | 100 | | Plus |
BS08654.pep Sequence
Translation from 16 to 1017
> BS08654.pep
MARLRLLIGLIFCLAISLDSVLSAPVISQISKDVVASVGDSVEFNCTVEE
VGQLSVSWAKRPSESDTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIY
TFRIQNIEVSDMGPYECQVLVSATEKVTKKLSLQIKTPPVIAENTPKSTL
VTEGQNLELTCHANGFPKPTISWAREHNAVMPAGGHLLAEPTLRIRSVHR
MDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELE
CSVQGYPAPTVVWHKNGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEE
DFGDYYCNATNKLGHADARLHLFQTVIPVPSLS*
BS08654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ama-PC | 333 | CG2198-PC | 1..333 | 1..333 | 1713 | 100 | Plus |
Ama-PA | 333 | CG2198-PA | 1..333 | 1..333 | 1713 | 100 | Plus |
Ama-PB | 341 | CG2198-PB | 9..341 | 1..333 | 1713 | 100 | Plus |
Lac-PA | 359 | CG12369-PA | 16..325 | 14..329 | 656 | 38.1 | Plus |
CG31814-PB | 643 | CG31814-PB | 74..378 | 25..332 | 325 | 28.7 | Plus |