Clone BS08654 Report

Search the DGRC for BS08654

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptAma-RA
Protein status:BS08654.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08654.3prime Sequence

839 bp (784 high quality bases) assembled on 2006-01-11

> BS08654.3prime
ATGGTCTAGAAAGCTTTTACGACAAGGAGGGCACTGGGATGACGGTCTGG
AAGAGATGCAGTCGCGCATCGGCGTGTCCCAGCTTATTGGTGGCATTGCA
GTAGTAGTCCCCAAAGTCCTCCTCGCCCACGCTATCGATGCGCAGCACAG
AGGTTGTGGTTCCCGAGGAGGAGGCGGTGTTGGCCACCTCGTGGTGCCGG
CTAGACTGCAGGGGCACGCCATTCTTGTGCCAAACTACAGTCGGAGCCGG
GTAGCCCTGCACGGAGCACTCCAGCTCCGCGGAATGGGACACCATTTGGG
CGATCTTGGGCCTCTGGACGGCAATCTGCGGACGGAACTCCACTTCGACC
CGGATCAACCTCTTGTCCGGCTGGCCCTCTCCGTTCTGCGCGATGCAGTA
GTAGCCGCCGCGATCCATCCGGTGCACGGAACGAATCCGGAGAGTTGGTT
CGGCCAGCAAATGGCCACCGGCAGGCATCACTGCATTATGCTCGCGGGCC
CAGGAGATCGTAGGCTTGGGAAAGCCATTGGCATGGCAGGTCAGCTCCAG
ATTCTGTCCCTCTGTCACCAGGGTGCTCTTGGGGGTGTTCTCCGCAATCA
CCGGCGGGGTCTTGATCTGCAGGCTCAGCTTCTTGGTCACCTTCTCCGTG
GCCGAAACAAGCACCTGACACTCGTACGGACCCATGTCACTGACTTCGAT
GTTCTGAATGCGGAAGGTGTAAATGGCACTTCCGGTCTTGGGTCCTTCGG
TGACCGTTACGTTGTACCGCTGGTCGGGCAGACTGAGGATATTCCGCATG
GAGAGCACCACCGAGTTGGTGTCCGACTCGCTGGGACGC

BS08654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2198-PB 1026 Ama-RB 204..1026 839..17 4115 100 Minus
CG2198-PA 1002 Ama-RA 180..1002 839..17 4115 100 Minus
CG2198-PC 1002 Ama-RC 180..1002 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ama-RC 1526 CG2198-RC 284..1106 839..17 4115 100 Minus
Ama-RA 1542 CG2198-RA 300..1122 839..17 4115 100 Minus
Ama-RB 1833 CG2198-RB 591..1413 839..17 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6764019..6764841 839..17 4115 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:26:59 has no hits.

BS08654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:29 Download gff for BS08654.3prime
Subject Subject Range Query Range Percent Splice Strand
Ama-PC 180..1002 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:02 Download gff for BS08654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2198-PC 180..1002 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:46 Download gff for BS08654.3prime
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 591..1425 4..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:21 Download gff for BS08654.3prime
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 591..1425 4..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:21 Download gff for BS08654.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6764019..6764853 4..839 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:46 Download gff for BS08654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2589741..2590575 4..839 99   Minus

BS08654.5prime Sequence

910 bp (775 high quality bases) assembled on 2006-01-11

> BS08654.5prime
GAAGTTATCAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATAT
TCTGCCTTGCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGC
CAGATCAGCAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAA
CTGCACCGTGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTC
CCAGCGAGTCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTC
AGTCTGCCCGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGAC
CGGAAGTGCCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACA
TGGGTCCGTACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACC
AAGAAGCTGAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACAC
CCCCAAGAGCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCC
ATGCCAATGGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAAT
GCAGTGATGCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGAT
TCGTTCCGTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGA
ACGGAGAGGGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTC
CGTCCGCAGATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCA
TTCCGCGGAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAG
TTTGGCACAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTG
GGCAACACCGCCTCCTCCTCGGGAACACAACCTCTGTGCTGCGCATCGAT
AGCGTGGGCG

BS08654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2198-PB 1026 Ama-RB 22..884 14..876 4290 99.8 Plus
CG2198-PA 1002 Ama-RA 1..860 17..876 4275 99.8 Plus
CG2198-PC 1002 Ama-RC 1..860 17..876 4275 99.8 Plus
CG2198-PB 1026 Ama-RB 885..919 876..910 175 100 Plus
CG2198-PA 1002 Ama-RA 861..895 876..910 175 100 Plus
CG2198-PC 1002 Ama-RC 861..895 876..910 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ama-RC 1526 CG2198-RC 102..999 14..910 4450 99.8 Plus
Ama-RA 1542 CG2198-RA 118..1015 14..910 4450 99.8 Plus
Ama-RB 1833 CG2198-RB 409..1306 14..910 4450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6763837..6764734 14..910 4425 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 02:41:20 has no hits.

BS08654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:31 Download gff for BS08654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2198-PB 20..919 9..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:04 Download gff for BS08654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2198-PB 20..919 9..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:01 Download gff for BS08654.5prime
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 407..1306 9..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:15 Download gff for BS08654.5prime
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 407..1306 9..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:15 Download gff for BS08654.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6763827..6764734 5..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:01 Download gff for BS08654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2589549..2590456 5..910 99   Plus

BS08654.complete Sequence

1034 bp (1034 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636222

> BS08654.complete
GAAGTTATCAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATAT
TCTGCCTTGCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGC
CAGATCAGCAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAA
CTGCACCGTGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTC
CCAGCGAGTCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTC
AGTCTGCCCGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGAC
CGGAAGTGCCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACA
TGGGTCCGTACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACC
AAGAAGCTGAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACAC
CCCCAAGAGCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCC
ATGCCAATGGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAAT
GCAGTGATGCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGAT
TCGTTCCGTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGA
ACGGAGAGGGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTC
CGTCCGCAGATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCA
TTCCGCGGAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAG
TTTGGCACAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTG
GCCAACACCGCCTCCTCCTCGGGAACCACAACCTCTGTGCTGCGCATCGA
TAGCGTGGGCGAGGAGGACTTTGGGGACTACTACTGCAATGCCACCAATA
AGCTGGGACACGCCGATGCGCGACTGCATCTCTTCCAGACCGTCATCCCA
GTGCCCTCCTTGTCGTAAAAGCTTTCTAGACCAT

BS08654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ama-RB 1026 CG2198-PB 22..1026 14..1018 5025 100 Plus
Ama-RC 1002 CG2198-PC 1..1002 17..1018 5010 100 Plus
Ama-RA 1002 CG2198-PA 1..1002 17..1018 5010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ama-RC 1526 CG2198-RC 102..1106 14..1018 5025 100 Plus
Ama-RA 1542 CG2198-RA 118..1122 14..1018 5025 100 Plus
Ama-RB 1833 CG2198-RB 409..1413 14..1018 5025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6763837..6764841 14..1018 5025 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:13 has no hits.

BS08654.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:02 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 20..1026 9..1018 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:40 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
Ama-RC 95..1116 6..1031 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:24 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 412..1411 17..1016 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:02 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
Ama-RC 95..1116 6..1031 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:11 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 412..1411 17..1016 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:11 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6763840..6764839 17..1016 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:24 Download gff for BS08654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2589562..2590561 17..1016 100   Plus

BS08654.pep Sequence

Translation from 16 to 1017

> BS08654.pep
MARLRLLIGLIFCLAISLDSVLSAPVISQISKDVVASVGDSVEFNCTVEE
VGQLSVSWAKRPSESDTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIY
TFRIQNIEVSDMGPYECQVLVSATEKVTKKLSLQIKTPPVIAENTPKSTL
VTEGQNLELTCHANGFPKPTISWAREHNAVMPAGGHLLAEPTLRIRSVHR
MDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELE
CSVQGYPAPTVVWHKNGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEE
DFGDYYCNATNKLGHADARLHLFQTVIPVPSLS*

BS08654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ama-PC 333 CG2198-PC 1..333 1..333 1713 100 Plus
Ama-PA 333 CG2198-PA 1..333 1..333 1713 100 Plus
Ama-PB 341 CG2198-PB 9..341 1..333 1713 100 Plus
Lac-PA 359 CG12369-PA 16..325 14..329 656 38.1 Plus
CG31814-PB 643 CG31814-PB 74..378 25..332 325 28.7 Plus