Clone Sequence Records
BS08658.3prime Sequence
861 bp (724 high quality bases) assembled on 2006-01-11
> BS08658.3prime
ATGGTCTAGAAAGCTTTCATAAGCTGTAGCAATCTGATGCCGAGGATGCA
CTGCGTCTTCTCATTGCATTCGGATCTCTTTTGAGTAGATAAACGCACAG
ACACAGGCAGGCAAGGAGTAGGCACACCAATCCCAACATCGCATAGAATC
CCTGGCGGTAGCGTGCTGCATCGGCACTCGCTTCCAAGAGTCGTACCCGC
TGGCCCAGAGCTCCTCCTCCCCTCAAGTCCTCCTCTCTTTCCAGTGGCAT
TAACACCTGCCAGAATCCGTAAACCATTTGCAAGTGATTGGAGTAGCCCG
AATCCAGTTGATTGCTGGCCGTGTAGGAATTGGAGGGTGCTGCTCGATAG
GTATCGTGGCGGTTGCTACGCGATAAGCTTCTATCTAGCCCTGGAGCTCC
TGTCTCCCCTCTAAGTAGCTTATCCACCTCAGCCTCATCGACTGATCCTG
TCTGCGGCGTCTTTGCTTGCTCTCCCAAGCTATAAACGAATGGGTTCTCC
TTGTTGTACGGTAACCAGCCGTCGTATATCCGCCCCGGAGTGGGGTTGCC
ATTTTTAATGAAGTTCGCAAATGCTCCTCTTATTTTGCGACAGAGCTGCT
CCTCCTCGCCACTGAATCTTCGACGAGCTATCTGCTGAAACAGACTCGGA
CCGAGGAGAAGTGGGAGATCTGAGCTGTGGGAGGCTCCGCCAAAAAGATT
TCTTCTGCCTCGCATGTCCATCGAGTGGGAGTGGTCGAATACATAGGCAT
AGCTAGTGGTTCCATTTAAAAGCTCCAAGATTCGTGAGTACGGTAACTCA
TAGAGTGATTCCGAGAGTAGTCGTTGCATTCCAGCCAGCAAGTGGCTGAC
ACCCTCTCCCT
BS08658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PA | 2058 | CG12869-RA | 1214..2058 | 861..17 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 1431..2275 | 861..17 | 4225 | 100 | Minus |
| CG12869-RB | 3312 | CG12869-RB | 1909..2753 | 861..17 | 4225 | 100 | Minus |
| CG12869-RA | 2857 | CG12869-RA | 1454..2298 | 861..17 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14594214..14595058 | 861..17 | 4225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:08:34 has no hits.
BS08658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:38 Download gff for
BS08658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1214..2058 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:16 Download gff for
BS08658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1214..2058 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:57:56 Download gff for
BS08658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 1454..2298 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:33 Download gff for
BS08658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 1454..2298 | 17..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:33 Download gff for
BS08658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14594214..14595058 | 17..861 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:57:56 Download gff for
BS08658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10481719..10482563 | 17..861 | 100 | | Minus |
BS08658.5prime Sequence
854 bp (770 high quality bases) assembled on 2006-01-11
> BS08658.5prime
GAAGTTATCAGTCGACATGTGGAATGCATTAAGGATTCAGCAGATTTTGC
GTCTACTCCCGATCCTGATTCACCTGTCGCCATACATTTCCGCCCAACAG
ACGCACATTAAATTGGAGCAAGGGGATCTCATTGGGCTCAAGGTCTTTCC
GGATGGGACACGTGGCGCTGTCTACGCCTTTCTGGGCATTCCCTACGCCC
AGGCGCCCATCAACGAACTACGATTTGCTCCCGCCAAGCCGAGCTCCAGC
TTCAACCGCACCCTCCAGGCCACCACCATGCAGCCGCTGTGCCCGCAGCT
CGCGAACACCATCTACGACGAGAGCTCCGATGGCTCCATGCCCAGATCAG
TGAGCACCGACGAGGACTGCCTGTACCTGAACATTTGGACACCGGAATCG
GGAATGCGGTACGGCAAGCTGCCCATAGTGGTCATTGTCACGGGTGAGGA
GTTTGCCTACGACTGGCCCAGAAATCGCATCAATGGCTTGGATCTGGCCG
GAGAGGGCATTGTGGTAGTCAGTGTCCAGTACCGAAATAATATCTACGGA
TGGCTGAGTCTAGGCGAACAGCATCGTAATGTGCCTGGAAATTATGGCCT
AAGTGATGTTCAGATGGCACTGCGGTGGATTCGAAGGAATGCAGATGCCT
TTGGCGGCAATCCAGATCACATTACTCTTCTGGGTCATGGGAGTGGAGGA
GCACCTCTGGCACTAGTTGCTACTTTGGAGGATTCCAGCCAGGTTAAACA
ACTGGTGCTCATGTCACCCGGTCCCATTATGCGAGCCTTGGGTCAGAATC
ACCAAAAATGGATAGTGGAAACTGGTCCAGTGCTGGTACAGAAATTGGGC
TGCC
BS08658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PA | 2058 | CG12869-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 217..1055 | 16..854 | 4180 | 99.9 | Plus |
| CG12869-RB | 3312 | CG12869-RB | 695..1533 | 16..854 | 4180 | 99.9 | Plus |
| CG12869-RA | 2857 | CG12869-RA | 240..1078 | 16..854 | 4180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14593214..14593838 | 230..854 | 3110 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14592761..14592881 | 16..136 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 14592950..14593043 | 136..229 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:50:40 has no hits.
BS08658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:39 Download gff for
BS08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:18 Download gff for
BS08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:48 Download gff for
BS08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 240..1078 | 16..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:11 Download gff for
BS08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 240..1078 | 16..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:11 Download gff for
BS08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14592761..14592881 | 16..136 | 100 | -> | Plus |
| 2R | 14592951..14593043 | 137..229 | 100 | -> | Plus |
| 2R | 14593214..14593838 | 230..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:48 Download gff for
BS08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10480266..10480386 | 16..136 | 100 | -> | Plus |
| arm_2R | 10480456..10480548 | 137..229 | 100 | -> | Plus |
| arm_2R | 10480719..10481343 | 230..854 | 99 | | Plus |
BS08658.complete Sequence
2090 bp assembled on 2009-08-24
GenBank Submission: KX806398
> BS08658.complete
GAAGTTATCAGTCGACATGTGGAATGCATTAAGGATTCAGCAGATTTTGC
GTCTACTCCCGATCCTGATTCACCTGTCGCCATACATTTCCGCCCAACAG
ACGCACATTAAATTGGAGCAAGGGGATCTCATTGGGCTCAAGGTCTTTCC
GGATGGGACACGTGGCGCTGTCTACGCCTTTCTGGGCATTCCCTACGCCC
AGGCGCCCATCAACGAACTACGATTTGCTCCCGCCAAGCCGAGCTCCAGC
TTCAACCGCACCCTCCAGGCCACCACCATGCAGCCGCTGTGCCCGCAGCT
CGCGAACACCATCTACGACGAGAGCTCCGATGGCTCCATGCCCAGATCAG
TGAGCACCGACGAGGACTGCCTGTACCTGAACATTTGGACACCGGAATCG
GGAATGCGGTACGGCAAGCTGCCCATAGTGGTCATTGTCACGGGTGAGGA
GTTTGCCTACGACTGGCCCAGAAATCGCATCAATGGCTTGGATCTGGCCG
GAGAGGGCATTGTGGTAGTCAGTGTCCAGTACCGAAATAATATCTACGGA
TGGCTGAGTCTAGGCGAACAGCATCGTAATGTGCCTGGAAATTATGGCCT
AAGTGATGTTCAGATGGCACTGCGGTGGATTCGAAGGAATGCAGATGCCT
TTGGCGGCAATCCAGATCACATTACTCTTCTGGGTCATGGGAGTGGAGGA
GCACCTCTGGCACTAGTTGCTACTTTGGAGGATTCCAGCCAGGTTAAACA
ACTGGTGCTCATGTCACCCGGTCCCATTATGCGAGCCTTGGGTCAGAATC
ACCAAAAATGGATAGTGGAAACTGGTCAAGTGCTGGTACAGAAATTGGGC
TGCCAATTTGAGGAGGCACAACGTCGCCAGTTGATGGGTTGTCTGAGGCG
CAAGAGCCGGGAGGACTTGCTCCGTGCATACGAAAGCGTTTATAACCATG
GCAACGGAAGCTCCCAGCTGGGAGTAATACTACCCGAAGGATTGCCACTC
GAACAACGCCTTCGTAACAAAACATTGCCCCCCGTACTGCTGGGCATCAC
CTCCAACGAAGGAGCCTTCCTGCAGGACTACTGGCTGGACGTGGCCAGGG
AGGGTCAGGTGGCGCTACATAAGTACATCAATCACACATTGTTGCCGAAT
GTGATGCGAGCACTGGAGTCGGTGGGTGAGGAGAGCTCCACGCAACTGGC
GGCCATTAGATGGAGGTACTTCAATGGCAAGGGAGAGGGTGTCAGCCACT
TGCTGGCTGGAATGCAACGACTACTCTCGGAATCACTCTATGAGTTACCG
TACTCACGAATCTTGGAGCTTTTAAATGGAACCACTAGCTATGCCTATGT
ATTCGACCACTCCCACTCGATGGACATGCGAGGCAGAAGAAATCTTTTTG
GCGGAGCCTCCCACAGCTCAGATCTCCCACTTCTCCTCGGTCCGAGTCTG
TTTCAGCAGATAGCTCGTCGAAGATTCAGTGGCGAGGAGGAGCAGCTCTG
TCGCAAAATAAGAGGAGCATTTGCGAACTTCATTAAAAATGGCAACCCCA
CTCCGGGGCGGATATACGACGGCTGGTTACCGTACAACAAGGAGAACCCA
TTCGTTTATAGCTTGGGAGAGCAAGCAAAGACGCCGCAGACAGGATCAGT
CGATGAGGCTGAGGTGGATAAGCTACTTAGAGGGGAGACAGGAGCTCCAG
GGCTAGATAGAAGCTTATCGCGTAGCAACCGCCACGATACCTATCGAGCA
GCACCCTCCAATTCCTACACGGCCAGCAATCAACTGGATTCGGGCTACTC
CAATCACTTGCAAATGGTTTACGGATTCTGGCAGGTGTTAATGCCACTGG
AAAGAGAGGAGGACTTGAGGGGAGGAGGAGCTCTGGGCCAGCGGGTACGA
CTCTTGGAAGCGAGTGCCGATGCAGCACGCTACCGCCAGGGATTCTATGC
GATGTTGGGATTGGTGTGCCTACTCCTTGCCTGCCTGTGTCTGTGCGTTT
ATCTACTCAAAAGAGATCCGAATGCAATGAGAAGACGCAGTGCATCCTCG
GCATCAGATTGCTACAGCTTATGAAAGCTTTCTAGACCAT
BS08658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2058 | CG12869-PC | 1..2058 | 17..2074 | 10290 | 100 | Plus |
| CG12869-RB | 2058 | CG12869-PB | 1..2058 | 17..2074 | 10290 | 100 | Plus |
| CG12869-RA | 2058 | CG12869-PA | 1..2058 | 17..2074 | 10290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 217..2275 | 16..2074 | 10295 | 100 | Plus |
| CG12869-RB | 3312 | CG12869-RB | 695..2753 | 16..2074 | 10295 | 100 | Plus |
| CG12869-RA | 2857 | CG12869-RA | 240..2298 | 16..2074 | 10295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14593214..14595058 | 230..2074 | 9225 | 100 | Plus |
| 2R | 25286936 | 2R | 14592761..14592881 | 16..136 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 14592950..14593043 | 136..229 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:27:29 has no hits.
BS08658.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:31 Download gff for
BS08658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 241..2297 | 17..2073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:11 Download gff for
BS08658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 241..2297 | 17..2073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:00 Download gff for
BS08658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 241..2297 | 17..2073 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:00 Download gff for
BS08658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14592762..14592881 | 17..136 | 100 | -> | Plus |
| 2R | 14592951..14593043 | 137..229 | 100 | -> | Plus |
| 2R | 14593214..14595057 | 230..2073 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:11 Download gff for
BS08658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10480267..10480386 | 17..136 | 100 | -> | Plus |
| arm_2R | 10480456..10480548 | 137..229 | 100 | -> | Plus |
| arm_2R | 10480719..10482562 | 230..2073 | 100 | | Plus |
BS08658.pep Sequence
Translation from 16 to 2073
> BS08658.pep
MWNALRIQQILRLLPILIHLSPYISAQQTHIKLEQGDLIGLKVFPDGTRG
AVYAFLGIPYAQAPINELRFAPAKPSSSFNRTLQATTMQPLCPQLANTIY
DESSDGSMPRSVSTDEDCLYLNIWTPESGMRYGKLPIVVIVTGEEFAYDW
PRNRINGLDLAGEGIVVVSVQYRNNIYGWLSLGEQHRNVPGNYGLSDVQM
ALRWIRRNADAFGGNPDHITLLGHGSGGAPLALVATLEDSSQVKQLVLMS
PGPIMRALGQNHQKWIVETGQVLVQKLGCQFEEAQRRQLMGCLRRKSRED
LLRAYESVYNHGNGSSQLGVILPEGLPLEQRLRNKTLPPVLLGITSNEGA
FLQDYWLDVAREGQVALHKYINHTLLPNVMRALESVGEESSTQLAAIRWR
YFNGKGEGVSHLLAGMQRLLSESLYELPYSRILELLNGTTSYAYVFDHSH
SMDMRGRRNLFGGASHSSDLPLLLGPSLFQQIARRRFSGEEEQLCRKIRG
AFANFIKNGNPTPGRIYDGWLPYNKENPFVYSLGEQAKTPQTGSVDEAEV
DKLLRGETGAPGLDRSLSRSNRHDTYRAAPSNSYTASNQLDSGYSNHLQM
VYGFWQVLMPLEREEDLRGGGALGQRVRLLEASADAARYRQGFYAMLGLV
CLLLACLCLCVYLLKRDPNAMRRRSASSASDCYSL*
BS08658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PC | 685 | CG12869-PC | 1..685 | 1..685 | 3582 | 100 | Plus |
| CG12869-PB | 685 | CG12869-PB | 1..685 | 1..685 | 3582 | 100 | Plus |
| CG12869-PA | 685 | CG12869-PA | 1..685 | 1..685 | 3582 | 100 | Plus |
| CG6414-PA | 583 | CG6414-PA | 14..522 | 13..516 | 348 | 27.6 | Plus |
| Gli-PF | 956 | CG3903-PF | 169..657 | 46..516 | 342 | 27.4 | Plus |
