Clone Sequence Records
BS08661.3prime Sequence
841 bp (793 high quality bases) assembled on 2006-01-11
> BS08661.3prime
ATGGTCTAGAAAGCTTCTACAGTTTTGACTCTGTGAGCCAGTTGAAGGAC
TGCGGCTTGCGATCGGATGACGGGCTGATGGCCACATTAATGATGGTTGG
CCTGTCGGTGAGCTGATTGGCCGCCTTGACAGCCGCCTGCAGCTGTTCGA
TCTCTGTGCAGAAGTAGCCCTTCATGCCGAACATTTTCATCATCTCCTCG
TAGCGCACCTGAACTCCCAATGCCGATGGTGGTGTGATTTGGGTAAGATC
GCCCTCACTGCGAATGGCCTCAAAAGTGTCCTTGTCGAAGCCGCCATAGA
TGCCATTGTTGTTCACAATCACAATGGTGACGGGCAGCTTATAGCGCACC
ATAGTCTCAATTTCCATGCCCGAGAATCCAAAGGCGCTGTCTCCCTCCAC
GCACAGGACTCGCTTTCCGGGCGCAAAGTCGCGGCAGAAAAGCGCGGCGG
CCACGGCGAATCCAGGACCCACGCCCATGGTGCCAAAGGTACCGGCATCC
AGGCGATGACGGGGCTGCTCGTTCAGCAGCATGGAGCGACCAATATCCAT
GGTGTTGGCTCCCTCACTAACAATGATCGTGTCCTTGGGCAGCAGCTCAC
GGAGATGGTGGAACACCGCGTAGTAGTTCAGCGGCGTCTCCGTGTTCAAA
GACATCTTTTGCACGGTGTCGCGGTTCTGCTTGCACTTGACGGCCAACTG
CTTCCACCAATCCTGCTCGTAGCCGAAGCGGAAGTTAACAGCGTTCATTT
GCTCAAACAATTGCTCGGCGAATGGACGGATGTCCGCCTGGATGGCCACC
GAAGCCACAACCGAGTTATGCAGCTCCTCAGGATTGATGTC
BS08661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-PA | 1707 | CG11208-RA | 883..1707 | 841..17 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1984 | CG11208-RA | 1022..1848 | 841..15 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20243173..20243777 | 237..841 | 3025 | 100 | Plus |
2R | 25286936 | 2R | 20242888..20243109 | 15..236 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:33:11 has no hits.
BS08661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:42 Download gff for
BS08661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 883..1707 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:22 Download gff for
BS08661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 883..1707 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:41 Download gff for
BS08661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 1022..1848 | 15..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:48 Download gff for
BS08661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 1022..1848 | 15..841 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:48 Download gff for
BS08661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20242888..20243109 | 15..236 | 100 | <- | Plus |
2R | 20243173..20243777 | 237..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:41 Download gff for
BS08661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16130393..16130614 | 15..236 | 100 | <- | Plus |
arm_2R | 16130678..16131282 | 237..841 | 100 | | Plus |
BS08661.5prime Sequence
872 bp (788 high quality bases) assembled on 2006-01-11
> BS08661.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTCGGAAAGGCTCCACGCTACG
BS08661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-PA | 1707 | CG11208-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1984 | CG11208-RA | 140..995 | 17..872 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20243804..20244413 | 872..263 | 3050 | 100 | Minus |
2R | 25286936 | 2R | 20244483..20244682 | 265..66 | 1000 | 100 | Minus |
2R | 25286936 | 2R | 20245198..20245249 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:54:11 has no hits.
BS08661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:44 Download gff for
BS08661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:23 Download gff for
BS08661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:01 Download gff for
BS08661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..995 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:52 Download gff for
BS08661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..995 | 17..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:52 Download gff for
BS08661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20243804..20244412 | 264..872 | 100 | <- | Minus |
2R | 20244485..20244680 | 68..263 | 100 | <- | Minus |
2R | 20245199..20245249 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:01 Download gff for
BS08661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16131309..16131917 | 264..872 | 100 | <- | Minus |
arm_2R | 16131990..16132185 | 68..263 | 100 | <- | Minus |
arm_2R | 16132704..16132754 | 17..67 | 100 | | Minus |
BS08661.complete Sequence
1739 bp assembled on 2008-01-16
GenBank Submission: FJ636223
> BS08661.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTCGGAAAGGCTCCACGCTACGACAAGGACGTGAAGTTTATCCAGGTGGA
CATCAATCCTGAGGAGCTGCATAACTCGGTTGTGGCTTCGGTGGCCATCC
AGGCGGACATCCGTCCATTCGCCGAGCAATTGTTTGAGCAAATGAACGCT
GTTAACTTCCGCTTCGGCTACGAGCAGGATTGGTGGAAGCAGTTGGCCGT
CAAGTGCAAGCAGAACCGCGACACCGTGCAAAAGATGTCTTTGAACACGG
AGACGCCGCTGAACTACTACGCGGTGTTCCACCATCTCCGTGAGCTGCTG
CCCAAGGACACGATCATTGTTAGTGAGGGAGCCAACACCATGGATATTGG
TCGCTCCATGCTGCTGAACGAGCAGCCCCGTCATCGCCTGGATGCCGGTA
CCTTTGGCACCATGGGCGTGGGTCCTGGATTCGCCGTGGCCGCCGCGCTT
TTCTGCCGCGACTTTGCGCCCGGAAAGCGAGTCCTGTGCGTGGAGGGAGA
CAGCGCCTTTGGATTCTCGGGCATGGAAATTGAGACTATGGTGCGCTATA
AGCTGCCCGTCACCATTGTGATTGTGAACAACAATGGCATCTATGGCGGC
TTCGACAAGGACACTTTTGAGGCCATTCGCAGTGAGGGCGATCTTACCCA
AATCACACCACCATCGGCATTGGGAGTTCAGGTGCGCTACGAGGAGATGA
TGAAAATGTTCGGCATGAAGGGCTACTTCTGCACAGAGATCGAACAGCTG
CAGGCGGCTGTCAAGGCGGCCAATCAGCTCACCGACAGGCCAACCATCAT
TAATGTGGCCATCAGCCCGTCATCCGATCGCAAGCCGCAGTCCTTCAACT
GGCTCACAGAGTCAAAACTGTAGAAGCTTTCTAGACCAT
BS08661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1707 | CG11208-PA | 1..1707 | 17..1723 | 8535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1984 | CG11208-RA | 140..1848 | 17..1725 | 8545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20243173..20244413 | 1503..263 | 6205 | 100 | Minus |
2R | 25286936 | 2R | 20242888..20243109 | 1725..1504 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 20244483..20244682 | 265..66 | 1000 | 100 | Minus |
2R | 25286936 | 2R | 20245198..20245249 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:14 has no hits.
BS08661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:34 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 1..1707 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:26 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 151..1857 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:47 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..1846 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:34 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 151..1859 | 17..1725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:39 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..1846 | 17..1723 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:39 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20242890..20243109 | 1504..1723 | 100 | <- | Minus |
2R | 20243173..20244412 | 264..1503 | 100 | <- | Minus |
2R | 20244485..20244680 | 68..263 | 100 | <- | Minus |
2R | 20245199..20245249 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:47 Download gff for
BS08661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16130395..16130614 | 1504..1723 | 100 | <- | Minus |
arm_2R | 16130678..16131917 | 264..1503 | 100 | <- | Minus |
arm_2R | 16131990..16132185 | 68..263 | 100 | <- | Minus |
arm_2R | 16132704..16132754 | 17..67 | 100 | | Minus |
BS08661.pep Sequence
Translation from 16 to 1722
> BS08661.pep
MAEVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNE
QAACYAAQAIGYLTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGG
ATNQDHEGIGGFQECPQVELSRPYCKYAARPATAALIPLHVEKAVRYATY
GRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPLAYPPHDDVIRAAKLL
RQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQ
CVSSARTLALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQVDINPEE
LHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQN
RDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLL
NEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGF
SGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPS
ALGVQVRYEEMMKMFGMKGYFCTEIEQLQAAVKAANQLTDRPTIINVAIS
PSSDRKPQSFNWLTESKL*
BS08661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-PA | 568 | CG11208-PA | 1..568 | 1..568 | 2955 | 100 | Plus |