Clone BS08661 Report

Search the DGRC for BS08661

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG11208-RA
Protein status:BS08661.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08661.3prime Sequence

841 bp (793 high quality bases) assembled on 2006-01-11

> BS08661.3prime
ATGGTCTAGAAAGCTTCTACAGTTTTGACTCTGTGAGCCAGTTGAAGGAC
TGCGGCTTGCGATCGGATGACGGGCTGATGGCCACATTAATGATGGTTGG
CCTGTCGGTGAGCTGATTGGCCGCCTTGACAGCCGCCTGCAGCTGTTCGA
TCTCTGTGCAGAAGTAGCCCTTCATGCCGAACATTTTCATCATCTCCTCG
TAGCGCACCTGAACTCCCAATGCCGATGGTGGTGTGATTTGGGTAAGATC
GCCCTCACTGCGAATGGCCTCAAAAGTGTCCTTGTCGAAGCCGCCATAGA
TGCCATTGTTGTTCACAATCACAATGGTGACGGGCAGCTTATAGCGCACC
ATAGTCTCAATTTCCATGCCCGAGAATCCAAAGGCGCTGTCTCCCTCCAC
GCACAGGACTCGCTTTCCGGGCGCAAAGTCGCGGCAGAAAAGCGCGGCGG
CCACGGCGAATCCAGGACCCACGCCCATGGTGCCAAAGGTACCGGCATCC
AGGCGATGACGGGGCTGCTCGTTCAGCAGCATGGAGCGACCAATATCCAT
GGTGTTGGCTCCCTCACTAACAATGATCGTGTCCTTGGGCAGCAGCTCAC
GGAGATGGTGGAACACCGCGTAGTAGTTCAGCGGCGTCTCCGTGTTCAAA
GACATCTTTTGCACGGTGTCGCGGTTCTGCTTGCACTTGACGGCCAACTG
CTTCCACCAATCCTGCTCGTAGCCGAAGCGGAAGTTAACAGCGTTCATTT
GCTCAAACAATTGCTCGGCGAATGGACGGATGTCCGCCTGGATGGCCACC
GAAGCCACAACCGAGTTATGCAGCTCCTCAGGATTGATGTC

BS08661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 1707 CG11208-RA 883..1707 841..17 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1984 CG11208-RA 1022..1848 841..15 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243173..20243777 237..841 3025 100 Plus
2R 25286936 2R 20242888..20243109 15..236 1110 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:33:11 has no hits.

BS08661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:42 Download gff for BS08661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 883..1707 17..841 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:22 Download gff for BS08661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 883..1707 17..841 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:41 Download gff for BS08661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1022..1848 15..841 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:48 Download gff for BS08661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1022..1848 15..841 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:48 Download gff for BS08661.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20242888..20243109 15..236 100 <- Plus
2R 20243173..20243777 237..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:41 Download gff for BS08661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16130393..16130614 15..236 100 <- Plus
arm_2R 16130678..16131282 237..841 100   Plus

BS08661.5prime Sequence

872 bp (788 high quality bases) assembled on 2006-01-11

> BS08661.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTCGGAAAGGCTCCACGCTACG

BS08661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 1707 CG11208-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1984 CG11208-RA 140..995 17..872 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243804..20244413 872..263 3050 100 Minus
2R 25286936 2R 20244483..20244682 265..66 1000 100 Minus
2R 25286936 2R 20245198..20245249 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:54:11 has no hits.

BS08661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:44 Download gff for BS08661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:23 Download gff for BS08661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:01 Download gff for BS08661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..995 17..872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:52 Download gff for BS08661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..995 17..872 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:52 Download gff for BS08661.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20243804..20244412 264..872 100 <- Minus
2R 20244485..20244680 68..263 100 <- Minus
2R 20245199..20245249 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:01 Download gff for BS08661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16131309..16131917 264..872 100 <- Minus
arm_2R 16131990..16132185 68..263 100 <- Minus
arm_2R 16132704..16132754 17..67 100   Minus

BS08661.complete Sequence

1739 bp assembled on 2008-01-16

GenBank Submission: FJ636223

> BS08661.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTCGGAAAGGCTCCACGCTACGACAAGGACGTGAAGTTTATCCAGGTGGA
CATCAATCCTGAGGAGCTGCATAACTCGGTTGTGGCTTCGGTGGCCATCC
AGGCGGACATCCGTCCATTCGCCGAGCAATTGTTTGAGCAAATGAACGCT
GTTAACTTCCGCTTCGGCTACGAGCAGGATTGGTGGAAGCAGTTGGCCGT
CAAGTGCAAGCAGAACCGCGACACCGTGCAAAAGATGTCTTTGAACACGG
AGACGCCGCTGAACTACTACGCGGTGTTCCACCATCTCCGTGAGCTGCTG
CCCAAGGACACGATCATTGTTAGTGAGGGAGCCAACACCATGGATATTGG
TCGCTCCATGCTGCTGAACGAGCAGCCCCGTCATCGCCTGGATGCCGGTA
CCTTTGGCACCATGGGCGTGGGTCCTGGATTCGCCGTGGCCGCCGCGCTT
TTCTGCCGCGACTTTGCGCCCGGAAAGCGAGTCCTGTGCGTGGAGGGAGA
CAGCGCCTTTGGATTCTCGGGCATGGAAATTGAGACTATGGTGCGCTATA
AGCTGCCCGTCACCATTGTGATTGTGAACAACAATGGCATCTATGGCGGC
TTCGACAAGGACACTTTTGAGGCCATTCGCAGTGAGGGCGATCTTACCCA
AATCACACCACCATCGGCATTGGGAGTTCAGGTGCGCTACGAGGAGATGA
TGAAAATGTTCGGCATGAAGGGCTACTTCTGCACAGAGATCGAACAGCTG
CAGGCGGCTGTCAAGGCGGCCAATCAGCTCACCGACAGGCCAACCATCAT
TAATGTGGCCATCAGCCCGTCATCCGATCGCAAGCCGCAGTCCTTCAACT
GGCTCACAGAGTCAAAACTGTAGAAGCTTTCTAGACCAT

BS08661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1707 CG11208-PA 1..1707 17..1723 8535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1984 CG11208-RA 140..1848 17..1725 8545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243173..20244413 1503..263 6205 100 Minus
2R 25286936 2R 20242888..20243109 1725..1504 1110 100 Minus
2R 25286936 2R 20244483..20244682 265..66 1000 100 Minus
2R 25286936 2R 20245198..20245249 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:14 has no hits.

BS08661.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:34 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 17..1723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:26 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 151..1857 17..1723 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:47 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..1846 17..1723 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:34 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 151..1859 17..1725 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:39 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..1846 17..1723 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:39 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20242890..20243109 1504..1723 100 <- Minus
2R 20243173..20244412 264..1503 100 <- Minus
2R 20244485..20244680 68..263 100 <- Minus
2R 20245199..20245249 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:47 Download gff for BS08661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16130395..16130614 1504..1723 100 <- Minus
arm_2R 16130678..16131917 264..1503 100 <- Minus
arm_2R 16131990..16132185 68..263 100 <- Minus
arm_2R 16132704..16132754 17..67 100   Minus

BS08661.pep Sequence

Translation from 16 to 1722

> BS08661.pep
MAEVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNE
QAACYAAQAIGYLTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGG
ATNQDHEGIGGFQECPQVELSRPYCKYAARPATAALIPLHVEKAVRYATY
GRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPLAYPPHDDVIRAAKLL
RQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQ
CVSSARTLALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQVDINPEE
LHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQN
RDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLL
NEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGF
SGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPS
ALGVQVRYEEMMKMFGMKGYFCTEIEQLQAAVKAANQLTDRPTIINVAIS
PSSDRKPQSFNWLTESKL*

BS08661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 568 CG11208-PA 1..568 1..568 2955 100 Plus