Clone Sequence Records
BS08663.3prime Sequence
863 bp (811 high quality bases) assembled on 2006-01-11
> BS08663.3prime
ATGGTCTAGAAAGCTTTCACACATTTCTGGTTATTTTACTAAAGTACATG
GGTCCAAAGTTGGCCGGCAGGTAGGGCACCACCATTTGTCCATACTTGAG
TCCCTTTGGGTGCTCGAACTTGAAGACATCGCTGAAGAGCGCCGTGTGGC
GACTCAGATCCTTGATGGTAGTTGTGATGCCGTACTCCGTGAAGACCTTT
TGCAGAGCCATGTGGACGACACCATCGTTCTGGATGGGCGACAGCGAGCA
GGTGGAGTAGACCAAACTGCCGCCTGGTCGCAGGAGACGCAAGCAGTTGG
CCAGGATGCCTGCCTGGAGCTCTGGTATCCGCAGGCGCTCCTTTATGCGC
GTCGGCTTGAAAATATTGTTGTCCTGCTCGTTGAGCACATGGCGATCCGT
GGTGCAGGGCACGTCGACCAGGATCTTGTCGAACTGCTCGTACTGGTCCA
GATTGCGGGCGTCACTCTGGCTGAGGATGAGGCGCTTTCCAGCCCAGCGC
TCCTTGTAGTCGAACAGGTACTCCTGCATCACTTTGCGCAGCTTGTTTAG
GCGGGATTCTTGGATGTCATTGCAGACCAGGTGGTCCAAGTGCAGCGTCT
GCAGCATAAGCAGCGATTTGCCGCCGGGAGAGGCACAGGCATCGAGCACA
CGCTCGCCAGGCTTCACCTGCAGGAAGAGAGGCGGCAAAGTCGAGGCACC
ATCCATCATAAAGTGGGAGAGCACACCGGTCATGCACTTCTTGGGTCCCT
TGAAGTCCGAGCAGTTGCCCATTTCATATGTGTACAGGGACAGATGCTCG
GGGTAGTGAAAGGAAGGCTCCGGTTCAATGGCGAGCGGGAAGTCGGCGCT
GGTTTGGTAGTAC
BS08663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-PA | 1512 | CG4749-RA | 666..1512 | 863..17 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1628 | CG4749-RA | 709..1555 | 863..17 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1148530..1149376 | 863..17 | 4235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:30:42 has no hits.
BS08663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:47 Download gff for
BS08663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 666..1512 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:27 Download gff for
BS08663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 666..1512 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:35:16 Download gff for
BS08663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 709..1557 | 11..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:50 Download gff for
BS08663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 709..1557 | 11..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:50 Download gff for
BS08663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1148530..1149378 | 11..863 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:35:16 Download gff for
BS08663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1148530..1149378 | 11..863 | 99 | | Minus |
BS08663.5prime Sequence
879 bp (784 high quality bases) assembled on 2006-01-11
> BS08663.5prime
GAAGTTATCAGTCGACATGTTGAAAGCACGGAACGTTTGTTTGCTGTCCA
GGAGGTGGAAGAGTGGCGCCAAGAAGCGATGGAATGTCCTGCAGAACAAG
AAGAACAACTGTGACCGAGCGCTGGAGAACTTCGATGACTTCTACGGAAG
TGTCTACGGCACCCGGTGGAAGAACATGCGGGCGGCGCTTCTCACGAGGC
ACAAGTATGTCGCCCTGGTCAACAATTTCGGGGACACGGAGCAGACGTGC
GCCATGCTGGAGTCAGATGGAGCCATCAACATGAAGTCGCTTATTAACCT
GGCGCAGGATCGGGTAAAGGACAGCACGGAGACGGTGCCGGAACAAGGCA
AATCACGTCATGAAATTGAAAGCAAACTGGATGCACTGCTGCGGAAACAG
CAGGAGCGCGAGGTGGCCTCCATATACCCGAGCTCGCCAGAAGATGGTTC
ATCGGCGCCACTGCCGCTGGAACTGAAGTTTGACAACGTAGAGGAAGATC
AGCCGGAGCAAGTGAATAATCCCTTCAAGCAGAGCCTGACGAAGGCTTTG
GAGGAGGATGTGAAGCTGGACGAGCATCGGTTGGTGGATCCCCAATTTGG
CACAGGCGGACTGTATGAATACATGCCTGCCCACAGCATCAAGGGCATGG
AGGACTGGGTGGCAGAGTCGGAGCACTACAAGTACTACCAAACCAGCGCC
GACTTCCCGCTCGCCATTGAACCGGAGCCTTCCTTTCACTACCCCGAGCA
TCTGTCCCTGTACACATATGAAATGGGCAACTGCTCGGACTTCAAGGGAC
CCAAGAAGTGCATGACCGGTGTGCTCTCCCACTTATGATGGATGGTGCCT
CGACTTTGCCGCCTCTCTTCCTGCAGGTG
BS08663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-PA | 1512 | CG4749-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG4749-PA | 1512 | CG4749-RA | 818..864 | 833..879 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1628 | CG4749-RA | 44..907 | 17..879 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1147865..1148728 | 17..879 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:46:37 has no hits.
BS08663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:47 Download gff for
BS08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:29 Download gff for
BS08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:01 Download gff for
BS08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 44..907 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:44 Download gff for
BS08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 44..907 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:44 Download gff for
BS08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1147867..1148728 | 19..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:01 Download gff for
BS08663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1147867..1148728 | 19..879 | 99 | | Plus |
BS08663.complete Sequence
1544 bp (1544 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636224
> BS08663.complete
GAAGTTATCAGTCGACATGTTGAAAGCACGGAACGTTTGTTTGCTGTCCA
GGAGGTGGAAGAGTGGCGCCAAGAAGCGATGGAATGTCCTGCAGAACAAG
AAGAACAACTGTGACCGAGCGCTGGAGAACTTCGATGACTTCTACGGAAG
TGTCTACGGCACCCGGTGGAAGAACATGCGGGCGGCGCTTCTCACGAGGC
ACAAGTATGTCGCCCTGGTCAACAATTTCGGGGACACGGAGCAGACGTGC
GCCATGCTGGAGTCAGATGGAGCCATCAACATGAAGTCGCTTATTAACCT
GGCGCAGGATCGGGTAAAGGACAGCACGGAGACGGTGCCGGAACAAGGCA
AATCACGTCATGAAATTGAAAGCAAACTGGATGCACTGCTGCGGAAACAG
CAGGAGCGCGAGGTGGCCTCCATATACCCGAGCTCGCCAGAAGATGGTTC
ATCGGCGCCACTGCCGCTGGAACTGAAGTTTGACAACGTAGAGGAAGATC
AGCCGGAGCAAGTGAATAATCCCTTCAAGCAGAGCCTGACGAAGGCTTTG
GAGGAGGATGTGAAGCTGGACGAGCATCGGTTGGTGGATCCCCAATTTGG
CACAGGCGGACTGTATGAATACATGCCTGCCCACAGCATCAAGGGCATGG
AGGACTGGGTGGCAGAGTCGGAGCACTACAAGTACTACCAAACCAGCGCC
GACTTCCCGCTCGCCATTGAACCGGAGCCTTCCTTTCACTACCCCGAGCA
TCTGTCCCTGTACACATATGAAATGGGCAACTGCTCGGACTTCAAGGGAC
CCAAGAAGTGCATGACCGGTGTGCTCTCCCACTTTATGATGGATGGTGCC
TCGACTTTGCCGCCTCTCTTCCTGCAGGTGAAGCCTGGCGAGCGTGTGCT
CGATGCCTGTGCCTCTCCCGGCGGCAAATCGCTGCTTATGCTGCAGACGC
TGCACTTGGACCACCTGGTCTGCAATGACATCCAAGAATCCCGCCTAAAC
AAGCTGCGCAAAGTGATGCAGGAGTACCTGTTCGACTACAAGGAGCGCTG
GGCTGGAAAGCGCCTCATCCTCAGCCAGAGTGACGCCCGCAATCTGGACC
AGTACGAGCAGTTCGACAAGATCCTGGTCGACGTGCCCTGCACCACGGAT
CGCCATGTGCTCAACGAGCAGGACAACAATATTTTCAAGCCGACGCGCAT
AAAGGAGCGCCTGCGGATACCAGAGCTCCAGGCAGGCATCCTGGCCAACT
GCTTGCGTCTCCTGCGACCAGGCGGCAGTTTGGTCTACTCCACCTGCTCG
CTGTCGCCCATCCAGAACGATGGTGTCGTCCACATGGCTCTGCAAAAGGT
CTTCACGGAGTACGGCATCACAACTACCATCAAGGATCTGAGTCGCCACA
CGGCGCTCTTCAGCGATGTCTTCAAGTTCGAGCACCCAAAGGGACTCAAG
TATGGACAAATGGTGGTGCCCTACCTGCCGGCCAACTTTGGACCCATGTA
CTTTAGTAAAATAACCAGAAATGTGTGAAAGCTTTCTAGACCAT
BS08663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1512 | CG4749-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1628 | CG4749-RA | 44..1555 | 17..1528 | 7560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1147865..1149376 | 17..1528 | 7560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:56:06 has no hits.
BS08663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:05 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 1..1512 | 17..1528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:45 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 33..1546 | 17..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:48 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 49..1554 | 22..1527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:06 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 33..1546 | 17..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:24 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 49..1554 | 22..1527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:24 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1147870..1149375 | 22..1527 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:48 Download gff for
BS08663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1147870..1149375 | 22..1527 | 100 | | Plus |
BS08663.pep Sequence
Translation from 16 to 1527
> BS08663.pep
MLKARNVCLLSRRWKSGAKKRWNVLQNKKNNCDRALENFDDFYGSVYGTR
WKNMRAALLTRHKYVALVNNFGDTEQTCAMLESDGAINMKSLINLAQDRV
KDSTETVPEQGKSRHEIESKLDALLRKQQEREVASIYPSSPEDGSSAPLP
LELKFDNVEEDQPEQVNNPFKQSLTKALEEDVKLDEHRLVDPQFGTGGLY
EYMPAHSIKGMEDWVAESEHYKYYQTSADFPLAIEPEPSFHYPEHLSLYT
YEMGNCSDFKGPKKCMTGVLSHFMMDGASTLPPLFLQVKPGERVLDACAS
PGGKSLLMLQTLHLDHLVCNDIQESRLNKLRKVMQEYLFDYKERWAGKRL
ILSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKPTRIKERLR
IPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFTEYG
ITTTIKDLSRHTALFSDVFKFEHPKGLKYGQMVVPYLPANFGPMYFSKIT
RNV*
BS08663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-PA | 503 | CG4749-PA | 1..503 | 1..503 | 2660 | 100 | Plus |
| Nsun2-PA | 746 | CG6133-PA | 162..339 | 276..443 | 196 | 29.7 | Plus |
