Clone Sequence Records
BS08665.3prime Sequence
924 bp (845 high quality bases) assembled on 2006-01-11
> BS08665.3prime
ATGGTCTAGAAAGCTTCTACAGCTGCGCCAGCGAGTCGGAGCGAATGAGC
GGCGCCAGTGAGCTGGGCGCCTTGTGACCCGGCTCAATCTCGTACTGTAC
GTCTAGCGAGGCACGTTTCTTTTCCAATGTGGAGGTCTGCCCCTCCGGAA
TGAACGCGGACACTATTATGGCACAGAAGACGCACAAGGCACCAAACACG
AAGGGCGGACCTGGCACATGCTGTGAGATCTTCTCCACGTTCGTCGCCCT
GCTGCCGCTGCTCTTCGCATGCGAGTCGTGGTCGTCGTTCAGATCGACGT
TAAACAGGTAGAAGACGACGCCGAAGACCGCAGGACCCAGGCCATTGCAC
AGACCCCTCATGCCCGTGATCATGCCCTGAACAGCGCCCTGACTCTCGGG
AGCCGCATAAAGGGATACAAAAGCACTGATGGCGGGATACGTGATGGAGC
CCAGGGCAGCCACAACGCCAGCCGACCACATCATCCACTTTTGACTGCCA
AAGCCGTACCACAGCAGCTGCACGATTTCCAGGGCTAGGCCCATTATAAT
CGTGCGCTTGGCTCCAAACACTTGCATGAAGGAGCCGAGTGTGACTTGCA
CCGTGATGCTGAGGATGCCTACTATGGCTATAAAGACCGAGACCTCCACA
TAGTTAAAGCCCATCTTCAGTTTCAGATAGACAAACATGCAGGAATACTC
CCCTGCCTCGGGCAGATAGGATAACAGCACGGTGAGGCACAGCATCAGCA
CGGTCTTATCGGTGCCCACTTTGCGCAGGGCCAGAAATGGATCCGCCTGC
TCCCAGCTGATAGGCGCACCCCAGGAGGCTGGCCGCATCTTCTCTGATAG
ACTCTCCGGCACGGCCACCAGTATGAAGAATACATCGAGCAGCGCAATGG
CCGTGGAGAGGGGCACGAACAGCG
BS08665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PC | 1467 | CG11537-RC | 560..1467 | 924..17 | 4490 | 99.7 | Minus |
| CG11537-PB | 2043 | CG11537-RB | 1136..2043 | 924..17 | 4490 | 99.7 | Minus |
| CG11537-PA | 2043 | CG11537-RA | 1136..2043 | 924..17 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RG | 3348 | CG11537-RG | 1947..2854 | 924..17 | 4510 | 99.8 | Minus |
| CG11537-RE | 3214 | CG11537-RE | 1647..2554 | 924..17 | 4510 | 99.8 | Minus |
| CG11537-RD | 3911 | CG11537-RD | 1712..2619 | 924..17 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3129585..3129860 | 113..388 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 3130239..3130448 | 573..782 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 3130511..3130654 | 781..924 | 690 | 98.6 | Plus |
| 3L | 28110227 | 3L | 3129925..3130024 | 387..486 | 500 | 100 | Plus |
| 3L | 28110227 | 3L | 3129326..3129423 | 17..114 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 3130091..3130178 | 485..572 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:08:43 has no hits.
BS08665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:50 Download gff for
BS08665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PB | 1136..2043 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:32 Download gff for
BS08665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PA | 1136..2043 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:18 Download gff for
BS08665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RD | 1712..2626 | 9..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:33:46 Download gff for
BS08665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RD | 1712..2626 | 9..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:33:46 Download gff for
BS08665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3129319..3129423 | 9..114 | 96 | <- | Plus |
| 3L | 3129587..3129859 | 115..387 | 100 | <- | Plus |
| 3L | 3129926..3130023 | 388..485 | 100 | <- | Plus |
| 3L | 3130092..3130178 | 486..572 | 100 | <- | Plus |
| 3L | 3130239..3130447 | 573..781 | 100 | <- | Plus |
| 3L | 3130512..3130654 | 782..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:18 Download gff for
BS08665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3129319..3129423 | 9..114 | 96 | <- | Plus |
| arm_3L | 3129587..3129859 | 115..387 | 100 | <- | Plus |
| arm_3L | 3129926..3130023 | 388..485 | 100 | <- | Plus |
| arm_3L | 3130092..3130178 | 486..572 | 100 | <- | Plus |
| arm_3L | 3130239..3130447 | 573..781 | 100 | <- | Plus |
| arm_3L | 3130512..3130654 | 782..924 | 98 | | Plus |
BS08665.5prime Sequence
874 bp (699 high quality bases) assembled on 2006-01-11
> BS08665.5prime
GAAGTTATCAGTCGACATGCCCAAAATCCATGTGAAGAAGCCGCTGGCGG
GACTGGTCATACGGAATCGAGCCCACAAGAGCAAGAGTGTCTTCACGAGT
TCCGGAATCGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTCT
AGAGTTCTTCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTCA
ACCAGACGTTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGGC
ATCAAGGGGATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTTC
GGACATCTGGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACCT
GCCTGCCCATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCATG
ATCTCAATAAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCTA
CGTGGCGGACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTGG
CCTCGGCCACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAAT
GCCCTGATGGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGGC
CATTGCGCTGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGTC
TATCAGAGAAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGAG
CAGGCGGATCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCGT
GCTGATGCTGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGGG
AGTATTCCTGCATGGTTGTCTATCTGAAACTGAAGATGGGCTTTAACTAT
GTGGAGGTCTCGGTCTTTATAGCC
BS08665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PC | 1467 | CG11537-RC | 1..858 | 17..874 | 4265 | 99.8 | Plus |
| CG11537-PB | 2043 | CG11537-RB | 657..1434 | 97..874 | 3865 | 99.8 | Plus |
| CG11537-PA | 2043 | CG11537-RA | 657..1434 | 97..874 | 3865 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 2510 | CG11537-RC | 550..1407 | 17..874 | 4275 | 99.9 | Plus |
| CG11537-RG | 3348 | CG11537-RG | 1468..2245 | 97..874 | 3875 | 99.9 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 1168..1945 | 97..874 | 3875 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3130511..3131037 | 719..193 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3130292..3130448 | 874..718 | 770 | 99.4 | Minus |
| 3L | 28110227 | 3L | 3131109..3131205 | 193..97 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 3142828..3142908 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:39:28 has no hits.
BS08665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:52 Download gff for
BS08665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PC | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:34 Download gff for
BS08665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PC | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:08 Download gff for
BS08665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..1407 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:30 Download gff for
BS08665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..1407 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:30 Download gff for
BS08665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3130292..3130447 | 719..874 | 99 | <- | Minus |
| 3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| 3L | 3142828..3142908 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:08 Download gff for
BS08665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3130292..3130447 | 719..874 | 99 | <- | Minus |
| arm_3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| arm_3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| arm_3L | 3142828..3142908 | 17..97 | 100 | | Minus |
BS08665.complete Sequence
1499 bp (1499 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636225
> BS08665.complete
GAAGTTATCAGTCGACATGCCCAAAATCCATGTGAAGAAGCCGCTGGCGG
GACTGGTCATACGGAATCGAGCCCACAAGAGCAAGAGTGTCTTCACGAGT
TCCGGAATCGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTCT
AGAGTTCTTCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTCA
ACCAGACGTTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGGC
ATCAAGGGGATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTTC
GGACATCTGGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACCT
GCCTGCCCATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCATG
ATCTCAATAAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCTA
CGTGGCGGACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTGG
CCTCGGCCACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAAT
GCCCTGATGGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGGC
CATTGCGCTGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGTC
TATCAGAGAAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGAG
CAGGCGGATCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCGT
GCTGATGCTGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGGG
AGTATTCCTGCATGTTTGTCTATCTGAAACTGAAGATGGGCTTTAACTAT
GTGGAGGTCTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCATCACGGT
GCAAGTCACACTCGGCTCCTTCATGCAAGTGTTTGGAGCCAAGCGCACGA
TTATAATGGGCCTAGCCCTGGAAATCGTGCAGCTGCTGTGGTACGGCTTT
GGCAGTCAAAAGTGGATGATGTGGTCGGCTGGCGTTGTGGCTGCCCTGGG
CTCCATCACGTATCCCGCCATCAGTGCTTTTGTATCCCTTTATGCGGCTC
CCGAGAGTCAGGGCGCTGTTCAGGGCATGATCACGGGCATGAGGGGTCTG
TGCAATGGCCTGGGTCCTGCGGTCTTCGGCGTCGTCTTCTACCTGTTTAA
CGTCGATCTGAACGACGACCACGACTCGCATGCGAAGAGCAGCGGCAGCA
GGGCGACGAACGTGGAGAAGATCTCACAGCATGTGCCAGGTCCGCCCTTC
GTGTTTGGTGCCTTGTGCGTCTTCTGTGCCATAATAGTGTCCGCGTTCAT
TCCGGAGGGGCAGACCTCCACATTGGAAAAGAAACGTGCCTCGCTAGACG
TACAGTACGAGATTGAGCCGGGTCACAAGGCGCCCAGCTCACTGGCGCCG
CTCATTCGCTCCGACTCGCTGGCGCAGCTGTAGAAGCTTTCTAGACCAT
BS08665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 1467 | CG11537-PC | 1..1467 | 17..1483 | 7335 | 100 | Plus |
| CG11537-RG | 2118 | CG11537-PG | 732..2118 | 97..1483 | 6935 | 100 | Plus |
| CG11537-RE | 2118 | CG11537-PE | 732..2118 | 97..1483 | 6935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 2510 | CG11537-RC | 550..2016 | 17..1483 | 7335 | 100 | Plus |
| CG11537-RG | 3348 | CG11537-RG | 1468..2854 | 97..1483 | 6935 | 100 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 1168..2554 | 97..1483 | 6935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3130511..3131037 | 719..193 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3129585..3129860 | 1387..1112 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 3130239..3130448 | 927..718 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 3129925..3130024 | 1113..1014 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 3129326..3129423 | 1483..1386 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 3131109..3131205 | 193..97 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 3130091..3130178 | 1015..928 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 3142828..3142908 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:29:00 has no hits.
BS08665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:07 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 1..1467 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:44 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 547..2013 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:09 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..2016 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:07 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 547..2020 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:10 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..2016 | 17..1483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:10 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3129926..3130023 | 1015..1112 | 100 | <- | Minus |
| 3L | 3130092..3130178 | 928..1014 | 100 | <- | Minus |
| 3L | 3130239..3130447 | 719..927 | 100 | <- | Minus |
| 3L | 3129326..3129423 | 1386..1483 | 100 | <- | Minus |
| 3L | 3129587..3129859 | 1113..1385 | 100 | <- | Minus |
| 3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| 3L | 3142828..3142908 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:09 Download gff for
BS08665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3130239..3130447 | 719..927 | 100 | <- | Minus |
| arm_3L | 3129326..3129423 | 1386..1483 | 100 | <- | Minus |
| arm_3L | 3129587..3129859 | 1113..1385 | 100 | <- | Minus |
| arm_3L | 3129926..3130023 | 1015..1112 | 100 | <- | Minus |
| arm_3L | 3130092..3130178 | 928..1014 | 100 | <- | Minus |
| arm_3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| arm_3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| arm_3L | 3142828..3142908 | 17..97 | 100 | | Minus |
BS08665.pep Sequence
Translation from 16 to 1482
> BS08665.pep
MPKIHVKKPLAGLVIRNRAHKSKSVFTSSGIGEPSVHHALVVIFLEFFAW
GLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLSAPLIGALSDIWGR
KFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVADVT
TPEERSKAYGLASATFAASLVISPALGNALMEMYGDTLVVALSTAIALLD
VFFILVAVPESLSEKMRPASWGAPISWEQADPFLALRKVGTDKTVLMLCL
TVLLSYLPEAGEYSCMFVYLKLKMGFNYVEVSVFIAIVGILSITVQVTLG
SFMQVFGAKRTIIMGLALEIVQLLWYGFGSQKWMMWSAGVVAALGSITYP
AISAFVSLYAAPESQGAVQGMITGMRGLCNGLGPAVFGVVFYLFNVDLND
DHDSHAKSSGSRATNVEKISQHVPGPPFVFGALCVFCAIIVSAFIPEGQT
STLEKKRASLDVQYEIEPGHKAPSSLAPLIRSDSLAQL*
BS08665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PC | 488 | CG11537-PC | 1..488 | 1..488 | 2484 | 100 | Plus |
| CG11537-PG | 705 | CG11537-PG | 245..705 | 28..488 | 2347 | 100 | Plus |
| CG11537-PE | 705 | CG11537-PE | 245..705 | 28..488 | 2347 | 100 | Plus |
| CG11537-PD | 705 | CG11537-PD | 245..705 | 28..488 | 2347 | 100 | Plus |
| CG11537-PA | 680 | CG11537-PA | 220..680 | 28..488 | 2347 | 100 | Plus |
