Clone Sequence Records
BS08666.3prime Sequence
919 bp (745 high quality bases) assembled on 2006-01-11
> BS08666.3prime
ATGGTCTAGAAAGCTTTTAAAGGACCTCTACATTCTTGGGCGCCCGGTAA
TCATAGGCAGCCACCTCGGGTCGCGTCACCAGATGCTCCGAATAGACTTC
CGCCAACCTCAGGCACTGCTCCACAGTTAGTTCAAAGGGACGCAGCGTGT
CCTGTACTTCGGCGCGCTGAAATAGCTTCTCAGCAACCTCCTCGCGATCT
TCTGGAGGAAGCAGGGTGCCATAGCCTCGGCGACAGTACTTCTGGCGCAT
GCTAAAGATGTGACGGACTACGCGCTCAACTAGGTGAAACGGCAATTGAG
TCTTAGGGCGCTTTAGGGGAATTAGCTTGACGACGCCCACATCCACCTGT
GGTTTCGGAACGAACGCCTTGCCCGGTATGGTGAACTTCATGACGGGTTC
CGTCCACACCTGCGACATCACCGAGAGCCGGCAGCGCTGTTCGCCGCCTA
CAGGGGCACAAATTCGCTCGGCCACCTCTTGCTGGAAGGTAAGAGTCATA
CAGGTGTCGATGCGCCGGAAAGCACCACGCCTGGCGGCCAAATCATCAAG
CCAATTGATCAACAGTCGAGTGGATATGGCGAACGGCAGGTTGCCAATCA
GATGGATCCGCTGTGAGGTGTCCGGGATGTGCTGCTCAATGTTGAAGCGC
AGGATGTCATCATAGTGGATGTCGAACTGGATGTTTAGTGGACTGGCGCA
TTCCTTGAGCAACTGCAGTGTTTCGCCGAAGCGCGGATCCTTCTCCACAA
GCAACAATCGCTGTGGGTGACGACGCAGAATCGAGCGCGTGATACCGCCC
GGCCCGGGACCCACCCTCAAGAACTAAATCCCGGGGATCGATGCGTCCCG
CCGACTTGACTATCTTGTCCGTGAGCCGCTCGTCCATGAGGAAGTTCTGG
CTAAGCTGGTTTCTGGCCT
BS08666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7319-PA | 993 | CG7319-RA | 195..993 | 815..17 | 3995 | 100 | Minus |
CG7319-PC | 1557 | CG7319-RC | 759..1557 | 815..17 | 3995 | 100 | Minus |
CG7319-PA | 993 | CG7319-RA | 92..196 | 919..815 | 475 | 98 | Minus |
CG7319-PC | 1557 | CG7319-RC | 656..760 | 919..815 | 475 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-RA | 1529 | CG42631-RA | 549..1451 | 919..16 | 4465 | 99.7 | Minus |
Ccdc56-RA | 1529 | CG42630-RA | 549..1451 | 919..16 | 4465 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11709590..11710492 | 919..16 | 4440 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:21:06 has no hits.
BS08666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:53 Download gff for
BS08666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7319-PC | 656..1557 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:35 Download gff for
BS08666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7319-PC | 656..1557 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:45 Download gff for
BS08666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 549..1453 | 13..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:36 Download gff for
BS08666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 549..1453 | 13..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:36 Download gff for
BS08666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11709590..11710494 | 13..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:45 Download gff for
BS08666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11702690..11703594 | 13..919 | 99 | | Minus |
BS08666.5prime Sequence
823 bp (795 high quality bases) assembled on 2006-01-11
> BS08666.5prime
GAAGTTATCAGTCGACATGGCCCAACCCAGTGCCCGTGTGCTCCAAAGCG
GCATGCGCCTGCCTCCAATGCCCACAATTCGGGAGCTGGTGAAGCTATAC
AGACTACAGGCCAGGAAACAGCTTAGCCAGAACTTCCTCATGGACGAGCG
GCTCACGGACAAGATAGTCAAGTCGGCGGGACGCATCGATCCCCGGGATT
TAGTTCTTGAGGTGGGTCCCGGGCCGGGCGGTATCACGCGCTCGATTCTG
CGTCGTCACCCACAGCGATTGTTGCTTGTGGAGAAGGATCCGCGCTTCGG
CGAAACACTGCAGTTGCTCAAGGAATGCGCCAGTCCACTAAACATCCAGT
TCGACATCCACTATGATGACATCCTGCGCTTCAACATTGAGCAGCACATC
CCGGACACCTCACAGCGGATCCATCTGATTGGCAACCTGCCGTTCGCCAT
ATCCACTCGACTGTTGATCAATTGGCTTGATGATTTGGCCGCCAGGCGTG
GTGCTTTCCGGCGCATCGACACCTGTATGACTCTTACCTTCCAGCAAGAG
GTGGCCGAGCGAATTTGTGCCCCTGTAGGCGGCGAACAGCGCTGCCGGCT
CTCGGTGATGTCGCAGGTGTGGACGGAACCCGTCATGAAGTTCACCATAC
CGGGCAAGGCGTTCGTTCCGAAACCACAGGTGGATGTGGGCGTCGTCAAG
CTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGA
GCGCGTAGTCCGTCACATCTTTAGCATGCGCCAGAAGTACTGTCGCCGAG
GCTATGGCACCCTGCTTCCTCCA
BS08666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7319-PA | 993 | CG7319-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG7319-PC | 1557 | CG7319-RC | 565..1371 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-RA | 1529 | CG42631-RA | 458..1264 | 17..823 | 4035 | 100 | Plus |
Ccdc56-RA | 1529 | CG42630-RA | 458..1264 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11709499..11710305 | 17..823 | 4035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:37:31 has no hits.
BS08666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:54 Download gff for
BS08666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7319-PC | 560..1370 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:37 Download gff for
BS08666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7319-PC | 560..1370 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:18 Download gff for
BS08666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 454..1263 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:46 Download gff for
BS08666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 454..1263 | 9..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:46 Download gff for
BS08666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11709499..11710304 | 17..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:18 Download gff for
BS08666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11702599..11703404 | 17..822 | 100 | | Plus |
BS08666.complete Sequence
1025 bp (1025 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636226
> BS08666.complete
GAAGTTATCAGTCGACATGGCCCAACCCAGTGCCCGTGTGCTCCAAAGCG
GCATGCGCCTGCCTCCAATGCCCACAATTCGGGAGCTGGTGAAGCTATAC
AGACTACAGGCCAGGAAACAGCTTAGCCAGAACTTCCTCATGGACGAGCG
GCTCACGGACAAGATAGTCAAGTCGGCGGGACGCATCGATCCCCGGGATT
TAGTTCTTGAGGTGGGTCCCGGGCCGGGCGGTATCACGCGCTCGATTCTG
CGTCGTCACCCACAGCGATTGTTGCTTGTGGAGAAGGATCCGCGCTTCGG
CGAAACACTGCAGTTGCTCAAGGAATGCGCCAGTCCACTAAACATCCAGT
TCGACATCCACTATGATGACATCCTGCGCTTCAACATTGAGCAGCACATC
CCGGACACCTCACAGCGGATCCATCTGATTGGCAACCTGCCGTTCGCCAT
ATCCACTCGACTGTTGATCAATTGGCTTGATGATTTGGCCGCCAGGCGTG
GTGCTTTCCGGCGCATCGACACCTGTATGACTCTTACCTTCCAGCAAGAG
GTGGCCGAGCGAATTTGTGCCCCTGTAGGCGGCGAACAGCGCTGCCGGCT
CTCGGTGATGTCGCAGGTGTGGACGGAACCCGTCATGAAGTTCACCATAC
CGGGCAAGGCGTTCGTTCCGAAACCACAGGTGGATGTGGGCGTCGTCAAG
CTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGA
GCGCGTAGTCCGTCACATCTTTAGCATGCGCCAGAAGTACTGTCGCCGAG
GCTATGGCACCCTGCTTCCTCCAGAAGATCGCGAGGAGGTTGCTGAGAAG
CTATTTCAGCGCGCCGAAGTACAGGACACGCTGCGTCCCTTTGAACTAAC
TGTGGAGCAGTGCCTGAGGTTGGCGGAAGTCTATTCGGAGCATCTGGTGA
CGCGACCCGAGGTGGCTGCCTATGATTACCGGGCGCCCAAGAATGTAGAG
GTCCTTTAAAAGCTTTCTAGACCAT
BS08666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-RA | 993 | CG42631-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-RA | 1529 | CG42631-RA | 458..1451 | 17..1010 | 4970 | 100 | Plus |
Ccdc56-RA | 1529 | CG42630-RA | 458..1451 | 17..1010 | 4970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11709499..11710492 | 17..1010 | 4970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:38:01 has no hits.
BS08666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:34 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RE | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:42 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RE | 417..1425 | 3..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:31 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 458..1448 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:34 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RE | 417..1425 | 3..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:15 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 458..1448 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:15 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11709499..11710489 | 17..1007 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:31 Download gff for
BS08666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11702599..11703589 | 17..1007 | 100 | | Plus |
BS08666.pep Sequence
Translation from 16 to 1008
> BS08666.pep
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVL*
BS08666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-PA | 330 | CG42631-PA | 1..330 | 1..330 | 1705 | 100 | Plus |
CG11837-PA | 306 | CG11837-PA | 25..229 | 34..257 | 181 | 29.5 | Plus |