Clone BS08666 Report

Search the DGRC for BS08666

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptmtTFB1-RA
Protein status:BS08666.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08666.3prime Sequence

919 bp (745 high quality bases) assembled on 2006-01-11

> BS08666.3prime
ATGGTCTAGAAAGCTTTTAAAGGACCTCTACATTCTTGGGCGCCCGGTAA
TCATAGGCAGCCACCTCGGGTCGCGTCACCAGATGCTCCGAATAGACTTC
CGCCAACCTCAGGCACTGCTCCACAGTTAGTTCAAAGGGACGCAGCGTGT
CCTGTACTTCGGCGCGCTGAAATAGCTTCTCAGCAACCTCCTCGCGATCT
TCTGGAGGAAGCAGGGTGCCATAGCCTCGGCGACAGTACTTCTGGCGCAT
GCTAAAGATGTGACGGACTACGCGCTCAACTAGGTGAAACGGCAATTGAG
TCTTAGGGCGCTTTAGGGGAATTAGCTTGACGACGCCCACATCCACCTGT
GGTTTCGGAACGAACGCCTTGCCCGGTATGGTGAACTTCATGACGGGTTC
CGTCCACACCTGCGACATCACCGAGAGCCGGCAGCGCTGTTCGCCGCCTA
CAGGGGCACAAATTCGCTCGGCCACCTCTTGCTGGAAGGTAAGAGTCATA
CAGGTGTCGATGCGCCGGAAAGCACCACGCCTGGCGGCCAAATCATCAAG
CCAATTGATCAACAGTCGAGTGGATATGGCGAACGGCAGGTTGCCAATCA
GATGGATCCGCTGTGAGGTGTCCGGGATGTGCTGCTCAATGTTGAAGCGC
AGGATGTCATCATAGTGGATGTCGAACTGGATGTTTAGTGGACTGGCGCA
TTCCTTGAGCAACTGCAGTGTTTCGCCGAAGCGCGGATCCTTCTCCACAA
GCAACAATCGCTGTGGGTGACGACGCAGAATCGAGCGCGTGATACCGCCC
GGCCCGGGACCCACCCTCAAGAACTAAATCCCGGGGATCGATGCGTCCCG
CCGACTTGACTATCTTGTCCGTGAGCCGCTCGTCCATGAGGAAGTTCTGG
CTAAGCTGGTTTCTGGCCT

BS08666.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7319-PA 993 CG7319-RA 195..993 815..17 3995 100 Minus
CG7319-PC 1557 CG7319-RC 759..1557 815..17 3995 100 Minus
CG7319-PA 993 CG7319-RA 92..196 919..815 475 98 Minus
CG7319-PC 1557 CG7319-RC 656..760 919..815 475 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-RA 1529 CG42631-RA 549..1451 919..16 4465 99.7 Minus
Ccdc56-RA 1529 CG42630-RA 549..1451 919..16 4465 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11709590..11710492 919..16 4440 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 11:21:06 has no hits.

BS08666.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:53 Download gff for BS08666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7319-PC 656..1557 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:35 Download gff for BS08666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7319-PC 656..1557 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:45 Download gff for BS08666.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 549..1453 13..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:36 Download gff for BS08666.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 549..1453 13..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:36 Download gff for BS08666.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11709590..11710494 13..919 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:45 Download gff for BS08666.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11702690..11703594 13..919 99   Minus

BS08666.5prime Sequence

823 bp (795 high quality bases) assembled on 2006-01-11

> BS08666.5prime
GAAGTTATCAGTCGACATGGCCCAACCCAGTGCCCGTGTGCTCCAAAGCG
GCATGCGCCTGCCTCCAATGCCCACAATTCGGGAGCTGGTGAAGCTATAC
AGACTACAGGCCAGGAAACAGCTTAGCCAGAACTTCCTCATGGACGAGCG
GCTCACGGACAAGATAGTCAAGTCGGCGGGACGCATCGATCCCCGGGATT
TAGTTCTTGAGGTGGGTCCCGGGCCGGGCGGTATCACGCGCTCGATTCTG
CGTCGTCACCCACAGCGATTGTTGCTTGTGGAGAAGGATCCGCGCTTCGG
CGAAACACTGCAGTTGCTCAAGGAATGCGCCAGTCCACTAAACATCCAGT
TCGACATCCACTATGATGACATCCTGCGCTTCAACATTGAGCAGCACATC
CCGGACACCTCACAGCGGATCCATCTGATTGGCAACCTGCCGTTCGCCAT
ATCCACTCGACTGTTGATCAATTGGCTTGATGATTTGGCCGCCAGGCGTG
GTGCTTTCCGGCGCATCGACACCTGTATGACTCTTACCTTCCAGCAAGAG
GTGGCCGAGCGAATTTGTGCCCCTGTAGGCGGCGAACAGCGCTGCCGGCT
CTCGGTGATGTCGCAGGTGTGGACGGAACCCGTCATGAAGTTCACCATAC
CGGGCAAGGCGTTCGTTCCGAAACCACAGGTGGATGTGGGCGTCGTCAAG
CTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGA
GCGCGTAGTCCGTCACATCTTTAGCATGCGCCAGAAGTACTGTCGCCGAG
GCTATGGCACCCTGCTTCCTCCA

BS08666.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7319-PA 993 CG7319-RA 1..807 17..823 4035 100 Plus
CG7319-PC 1557 CG7319-RC 565..1371 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-RA 1529 CG42631-RA 458..1264 17..823 4035 100 Plus
Ccdc56-RA 1529 CG42630-RA 458..1264 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11709499..11710305 17..823 4035 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:37:31 has no hits.

BS08666.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:54 Download gff for BS08666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7319-PC 560..1370 10..822 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:37 Download gff for BS08666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7319-PC 560..1370 10..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:18 Download gff for BS08666.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 454..1263 9..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:46 Download gff for BS08666.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 454..1263 9..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:46 Download gff for BS08666.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11709499..11710304 17..822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:18 Download gff for BS08666.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11702599..11703404 17..822 100   Plus

BS08666.complete Sequence

1025 bp (1025 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636226

> BS08666.complete
GAAGTTATCAGTCGACATGGCCCAACCCAGTGCCCGTGTGCTCCAAAGCG
GCATGCGCCTGCCTCCAATGCCCACAATTCGGGAGCTGGTGAAGCTATAC
AGACTACAGGCCAGGAAACAGCTTAGCCAGAACTTCCTCATGGACGAGCG
GCTCACGGACAAGATAGTCAAGTCGGCGGGACGCATCGATCCCCGGGATT
TAGTTCTTGAGGTGGGTCCCGGGCCGGGCGGTATCACGCGCTCGATTCTG
CGTCGTCACCCACAGCGATTGTTGCTTGTGGAGAAGGATCCGCGCTTCGG
CGAAACACTGCAGTTGCTCAAGGAATGCGCCAGTCCACTAAACATCCAGT
TCGACATCCACTATGATGACATCCTGCGCTTCAACATTGAGCAGCACATC
CCGGACACCTCACAGCGGATCCATCTGATTGGCAACCTGCCGTTCGCCAT
ATCCACTCGACTGTTGATCAATTGGCTTGATGATTTGGCCGCCAGGCGTG
GTGCTTTCCGGCGCATCGACACCTGTATGACTCTTACCTTCCAGCAAGAG
GTGGCCGAGCGAATTTGTGCCCCTGTAGGCGGCGAACAGCGCTGCCGGCT
CTCGGTGATGTCGCAGGTGTGGACGGAACCCGTCATGAAGTTCACCATAC
CGGGCAAGGCGTTCGTTCCGAAACCACAGGTGGATGTGGGCGTCGTCAAG
CTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGA
GCGCGTAGTCCGTCACATCTTTAGCATGCGCCAGAAGTACTGTCGCCGAG
GCTATGGCACCCTGCTTCCTCCAGAAGATCGCGAGGAGGTTGCTGAGAAG
CTATTTCAGCGCGCCGAAGTACAGGACACGCTGCGTCCCTTTGAACTAAC
TGTGGAGCAGTGCCTGAGGTTGGCGGAAGTCTATTCGGAGCATCTGGTGA
CGCGACCCGAGGTGGCTGCCTATGATTACCGGGCGCCCAAGAATGTAGAG
GTCCTTTAAAAGCTTTCTAGACCAT

BS08666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-RA 993 CG42631-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-RA 1529 CG42631-RA 458..1451 17..1010 4970 100 Plus
Ccdc56-RA 1529 CG42630-RA 458..1451 17..1010 4970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11709499..11710492 17..1010 4970 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:38:01 has no hits.

BS08666.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:34 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RE 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:42 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RE 417..1425 3..1013 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:31 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 458..1448 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:34 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RE 417..1425 3..1013 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:15 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 458..1448 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:15 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11709499..11710489 17..1007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:31 Download gff for BS08666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11702599..11703589 17..1007 100   Plus

BS08666.pep Sequence

Translation from 16 to 1008

> BS08666.pep
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVL*

BS08666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-PA 330 CG42631-PA 1..330 1..330 1705 100 Plus
CG11837-PA 306 CG11837-PA 25..229 34..257 181 29.5 Plus