Clone BS08667 Report

Search the DGRC for BS08667

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG14005-RA
Protein status:BS08667.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08667.3prime Sequence

874 bp (835 high quality bases) assembled on 2006-01-11

> BS08667.3prime
ATGGTCTAGAAAGCTTTCATGGTTCCAGCTTGATGGTCGTTTGCTTTATT
AACGCCAGCACTGCCTCCTGCCGCTCCATATACGCCAGAAAGTTATGTTT
CATGTCCAGGAACTGCTTCTCCTTGCGCACGAGCGACTGCAGACAGGCGT
CGTTCTGCTGCTCGAGCAAACTGTTCTCCTTGCGCAGCGCCTCCACTATT
GCCATTGTGATCTTGCCCGAGTGCGGCAGTATACTACGTCGCCCTCGTCT
CCTTTTGCTCGCCGAACGTTCGGCGTCCGTCTGGCCACCGTTGGTGTGGC
CTCCATATGGCGCATCCTCTGCCTCGGGCAGGATGTGGTTGGCAGGCGTG
AGAGGCGACCGCTGAATGACACTTTCGGCAGTAGCTCTCTCCAGGTAGTG
GCTAGCCGCGTTTTCCAGCTGCGTCACTGTGGGCTTGTATTCAATATTCA
CCAGCTGGTGGTGTTCGTCTGGCAGAGGCTCTGTCTTCACTACTGCGGGA
ACTAGGGGCTGGGCATCGAGGAAGGTGCATCCCTCTGAGTCGCGCTCAAA
TTTTAGCTGGGCGGGCGAAGTGTATAGCAGTGGCGGCAGGGCGGGCAAAT
CCACACGTGCTGTCGCACGGATCGTCTCCAGCACATTGCGGAAATGGAAG
AGGGCGGACGACGGCCAGGCAGGACAGAAGAGGCAATCGATCAGCGCGTA
GAGACGCCAATCCTTCGCGAAGTTCGCATTGCCCCCCACGCGATTGCGAT
CGTTCAATACTTGTTGCGGTAGCTGTTGATGCGCCGGCGAGCCTCCTGCT
TATTGAGCCGAACTCCGTTCTGCTGCAGGCCGTGCGCGATTTCCCGGAAA
TGGGCAAGTTGTCCGTGTAGGAGG

BS08667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-PA 954 CG14005-RA 214..954 757..17 3705 100 Minus
CG14005-PA 954 CG14005-RA 120..214 850..756 475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-RA 1396 CG14005-RA 184..1043 874..17 4235 99.7 Minus
CG14005-RB 1297 CG14005-RB 184..1037 874..17 4170 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5800870..5801608 17..755 3695 100 Plus
2L 23513712 2L 5801673..5801792 756..874 535 98.3 Plus
Blast to na_te.dros performed on 2015-02-12 11:28:21 has no hits.

BS08667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:55 Download gff for BS08667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-PA 95..954 17..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:38 Download gff for BS08667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-PA 95..954 17..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:38 Download gff for BS08667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 184..1043 17..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:27 Download gff for BS08667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 184..1043 17..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:27 Download gff for BS08667.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5800871..5801610 18..756 99 -> Plus
2L 5801674..5801792 757..874 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:38 Download gff for BS08667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5800871..5801610 18..756 99 -> Plus
arm_2L 5801674..5801792 757..874 98   Plus

BS08667.5prime Sequence

830 bp (738 high quality bases) assembled on 2006-01-11

> BS08667.5prime
GAAGTTATCAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACT
ACACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTG
CATGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGC
GCACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCC
GGCGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTG
GGGGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGA
TTGCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCA
ATGTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTG
CCGCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTC
AGAGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGA
AGACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATAC
AAGCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAG
AGCTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACC
ACATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGT
GGCCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACG
TAGTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGC
TGCGCAGGGAGAACAGTTTGCTCGAGCAGC

BS08667.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-PA 954 CG14005-RA 1..814 17..830 4045 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-RA 1396 CG14005-RA 90..903 17..830 4055 99.9 Plus
CG14005-RB 1297 CG14005-RB 90..897 17..830 3955 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5801010..5801608 830..232 2980 99.8 Minus
2L 23513712 2L 5801671..5801886 232..17 1080 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:57:19 has no hits.

BS08667.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:56 Download gff for BS08667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:40 Download gff for BS08667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:03 Download gff for BS08667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 90..903 17..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:10 Download gff for BS08667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 90..903 17..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:10 Download gff for BS08667.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5801010..5801608 232..830 99 <- Minus
2L 5801672..5801886 17..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:03 Download gff for BS08667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5801010..5801608 232..830 99 <- Minus
arm_2L 5801672..5801886 17..231 100   Minus

BS08667.complete Sequence

986 bp (986 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636227

> BS08667.complete
GAAGTTATCAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACT
ACACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTG
CATGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGC
GCACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCC
GGCGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTG
GGGGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGA
TTGCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCA
ATGTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTG
CCGCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTC
AGAGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGA
AGACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATAC
AAGCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAG
AGCTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACC
ACATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGT
GGCCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACG
TAGTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGC
TGCGCAAGGAGAACAGTTTGCTCGAGCAGCAGAACGACGCCTGTCTGCAG
TCGCTCGTGCGCAAGGAGAAGCAGTTCCTGGACATGAAACATAACTTTCT
GGCGTATATGGAGCGGCAGGAGGCAGTGCTGGCGTTAATAAAGCAAACGA
CCATCAAGCTGGAACCATGAAAGCTTTCTAGACCAT

BS08667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-RA 954 CG14005-PA 1..954 17..970 4770 100 Plus
CG14005-RB 948 CG14005-PB 1..948 17..970 4645 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-RA 1396 CG14005-RA 90..1043 17..970 4770 100 Plus
CG14005-RB 1297 CG14005-RB 90..1037 17..970 4645 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5800870..5801608 970..232 3695 100 Minus
2L 23513712 2L 5801671..5801886 232..17 1080 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:04:24 has no hits.

BS08667.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:08 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:48 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 84..1037 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:50 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 90..1042 17..969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:08 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 84..1037 17..970 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:23 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 90..1042 17..969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:23 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5800871..5801608 232..969 100 <- Minus
2L 5801672..5801886 17..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:50 Download gff for BS08667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5800871..5801608 232..969 100 <- Minus
arm_2L 5801672..5801886 17..231 100   Minus

BS08667.pep Sequence

Translation from 16 to 969

> BS08667.pep
MSGQKHLRLRYYTSLEEAMLLRLWREHLHAIPSYTDNLPIFREIAHGLQQ
NGVRLNKQEARRRINSYRNKYLNDRNRVGGNANFAKDWRLYALIDCLFCP
AWPSSALFHFRNVLETIRATARVDLPALPPLLYTSPAQLKFERDSEGCTF
LDAQPLVPAVVKTEPLPDEHHQLVNIEYKPTVTQLENAASHYLERATAES
VIQRSPLTPANHILPEAEDAPYGGHTNGGQTDAERSASKRRRGRRSILPH
SGKITMAIVEALRKENSLLEQQNDACLQSLVRKEKQFLDMKHNFLAYMER
QEAVLALIKQTTIKLEP*

BS08667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-PA 317 CG14005-PA 1..317 1..317 1651 100 Plus
CG14005-PB 315 CG14005-PB 1..315 1..317 1627 99.4 Plus