Clone Sequence Records
BS08667.3prime Sequence
874 bp (835 high quality bases) assembled on 2006-01-11
> BS08667.3prime
ATGGTCTAGAAAGCTTTCATGGTTCCAGCTTGATGGTCGTTTGCTTTATT
AACGCCAGCACTGCCTCCTGCCGCTCCATATACGCCAGAAAGTTATGTTT
CATGTCCAGGAACTGCTTCTCCTTGCGCACGAGCGACTGCAGACAGGCGT
CGTTCTGCTGCTCGAGCAAACTGTTCTCCTTGCGCAGCGCCTCCACTATT
GCCATTGTGATCTTGCCCGAGTGCGGCAGTATACTACGTCGCCCTCGTCT
CCTTTTGCTCGCCGAACGTTCGGCGTCCGTCTGGCCACCGTTGGTGTGGC
CTCCATATGGCGCATCCTCTGCCTCGGGCAGGATGTGGTTGGCAGGCGTG
AGAGGCGACCGCTGAATGACACTTTCGGCAGTAGCTCTCTCCAGGTAGTG
GCTAGCCGCGTTTTCCAGCTGCGTCACTGTGGGCTTGTATTCAATATTCA
CCAGCTGGTGGTGTTCGTCTGGCAGAGGCTCTGTCTTCACTACTGCGGGA
ACTAGGGGCTGGGCATCGAGGAAGGTGCATCCCTCTGAGTCGCGCTCAAA
TTTTAGCTGGGCGGGCGAAGTGTATAGCAGTGGCGGCAGGGCGGGCAAAT
CCACACGTGCTGTCGCACGGATCGTCTCCAGCACATTGCGGAAATGGAAG
AGGGCGGACGACGGCCAGGCAGGACAGAAGAGGCAATCGATCAGCGCGTA
GAGACGCCAATCCTTCGCGAAGTTCGCATTGCCCCCCACGCGATTGCGAT
CGTTCAATACTTGTTGCGGTAGCTGTTGATGCGCCGGCGAGCCTCCTGCT
TATTGAGCCGAACTCCGTTCTGCTGCAGGCCGTGCGCGATTTCCCGGAAA
TGGGCAAGTTGTCCGTGTAGGAGG
BS08667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-PA | 954 | CG14005-RA | 214..954 | 757..17 | 3705 | 100 | Minus |
CG14005-PA | 954 | CG14005-RA | 120..214 | 850..756 | 475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 1396 | CG14005-RA | 184..1043 | 874..17 | 4235 | 99.7 | Minus |
CG14005-RB | 1297 | CG14005-RB | 184..1037 | 874..17 | 4170 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5800870..5801608 | 17..755 | 3695 | 100 | Plus |
2L | 23513712 | 2L | 5801673..5801792 | 756..874 | 535 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:28:21 has no hits.
BS08667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:55 Download gff for
BS08667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 95..954 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:38 Download gff for
BS08667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 95..954 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:38 Download gff for
BS08667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 184..1043 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:27 Download gff for
BS08667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 184..1043 | 17..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:27 Download gff for
BS08667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5800871..5801610 | 18..756 | 99 | -> | Plus |
2L | 5801674..5801792 | 757..874 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:38 Download gff for
BS08667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5800871..5801610 | 18..756 | 99 | -> | Plus |
arm_2L | 5801674..5801792 | 757..874 | 98 | | Plus |
BS08667.5prime Sequence
830 bp (738 high quality bases) assembled on 2006-01-11
> BS08667.5prime
GAAGTTATCAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACT
ACACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTG
CATGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGC
GCACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCC
GGCGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTG
GGGGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGA
TTGCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCA
ATGTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTG
CCGCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTC
AGAGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGA
AGACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATAC
AAGCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAG
AGCTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACC
ACATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGT
GGCCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACG
TAGTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGC
TGCGCAGGGAGAACAGTTTGCTCGAGCAGC
BS08667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-PA | 954 | CG14005-RA | 1..814 | 17..830 | 4045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 1396 | CG14005-RA | 90..903 | 17..830 | 4055 | 99.9 | Plus |
CG14005-RB | 1297 | CG14005-RB | 90..897 | 17..830 | 3955 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5801010..5801608 | 830..232 | 2980 | 99.8 | Minus |
2L | 23513712 | 2L | 5801671..5801886 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:57:19 has no hits.
BS08667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:56 Download gff for
BS08667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 1..814 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:40 Download gff for
BS08667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 1..814 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:03 Download gff for
BS08667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..903 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:10 Download gff for
BS08667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..903 | 17..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:10 Download gff for
BS08667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5801010..5801608 | 232..830 | 99 | <- | Minus |
2L | 5801672..5801886 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:03 Download gff for
BS08667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5801010..5801608 | 232..830 | 99 | <- | Minus |
arm_2L | 5801672..5801886 | 17..231 | 100 | | Minus |
BS08667.complete Sequence
986 bp (986 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636227
> BS08667.complete
GAAGTTATCAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACT
ACACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTG
CATGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGC
GCACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCC
GGCGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTG
GGGGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGA
TTGCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCA
ATGTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTG
CCGCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTC
AGAGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGA
AGACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATAC
AAGCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAG
AGCTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACC
ACATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGT
GGCCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACG
TAGTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGC
TGCGCAAGGAGAACAGTTTGCTCGAGCAGCAGAACGACGCCTGTCTGCAG
TCGCTCGTGCGCAAGGAGAAGCAGTTCCTGGACATGAAACATAACTTTCT
GGCGTATATGGAGCGGCAGGAGGCAGTGCTGGCGTTAATAAAGCAAACGA
CCATCAAGCTGGAACCATGAAAGCTTTCTAGACCAT
BS08667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 954 | CG14005-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
CG14005-RB | 948 | CG14005-PB | 1..948 | 17..970 | 4645 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 1396 | CG14005-RA | 90..1043 | 17..970 | 4770 | 100 | Plus |
CG14005-RB | 1297 | CG14005-RB | 90..1037 | 17..970 | 4645 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5800870..5801608 | 970..232 | 3695 | 100 | Minus |
2L | 23513712 | 2L | 5801671..5801886 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:24 has no hits.
BS08667.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:08 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:48 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 84..1037 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:50 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..1042 | 17..969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:08 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 84..1037 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:23 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..1042 | 17..969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:23 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5800871..5801608 | 232..969 | 100 | <- | Minus |
2L | 5801672..5801886 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:50 Download gff for
BS08667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5800871..5801608 | 232..969 | 100 | <- | Minus |
arm_2L | 5801672..5801886 | 17..231 | 100 | | Minus |
BS08667.pep Sequence
Translation from 16 to 969
> BS08667.pep
MSGQKHLRLRYYTSLEEAMLLRLWREHLHAIPSYTDNLPIFREIAHGLQQ
NGVRLNKQEARRRINSYRNKYLNDRNRVGGNANFAKDWRLYALIDCLFCP
AWPSSALFHFRNVLETIRATARVDLPALPPLLYTSPAQLKFERDSEGCTF
LDAQPLVPAVVKTEPLPDEHHQLVNIEYKPTVTQLENAASHYLERATAES
VIQRSPLTPANHILPEAEDAPYGGHTNGGQTDAERSASKRRRGRRSILPH
SGKITMAIVEALRKENSLLEQQNDACLQSLVRKEKQFLDMKHNFLAYMER
QEAVLALIKQTTIKLEP*
BS08667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-PA | 317 | CG14005-PA | 1..317 | 1..317 | 1651 | 100 | Plus |
CG14005-PB | 315 | CG14005-PB | 1..315 | 1..317 | 1627 | 99.4 | Plus |