Clone Sequence Records
BS08668.3prime Sequence
846 bp (823 high quality bases) assembled on 2006-01-11
> BS08668.3prime
ATGGTCTAGAAAGCTTCTACTTAAACGGCTTCTCGGTCATAAGAAGACCA
TGCTCCCACAGGGCGGTGGCGACCTCTATCTTGCGAGCTGAAGACTCCAA
TGGCAACTGATCAATGGTGAGGTAAAATGGATAGGCCGATATGAGGAGCT
CAACGGCTTTAGCTTCCTCTGGCAGAATCTCCATGAAATAGGGCTCGTAC
TTGCAGTAATCCAGGCCATTGTCCACATGGTGGTAGATACGCACGCTGCC
ATCGGACTCGGTCACCAGACGCAGAATGTTGGCACGCAGCAGGCGCACGG
ATGTCTTTTTATTGAATTTGTAATCGCAGACGCAGTTGCCCTGCTCATCG
GCATCACTGCGTGCCCCATGAACAGTGCGCACCTCCTCCGAGGGCAATAC
GATCGGCGGAAGTGCCTCGTGCTGGAACTTCTTGGCCATCTGGTCGACGG
CCTCATCAATATCATCTTCGGAGGGCATCAAGTAATTGGTCACCAGCTTC
TGCACATTCTCCACCAGCTGTTTGCGCGACCCGCAGTCATTTCCCTTGTA
GGCATTGCCCAAAACTTGAAAAGTGTGCAGCGGCAAGCCGCGACGCAAGG
CCACACTCCGATCGACGGCCTTCTTAAGAACCATGGGCATTAGTGTCTCT
AGAAGATTGGCATATGCCTGCTGTTGGTAAACACTCAAGGTAATGTGCAG
CGAGTGCTGTTGCTCTTCGGTGATGGCCTGGTGAACAGCGCCTCTCGGGA
AATATAGTACATCGCCGGCGCTTAGTACCTCATCAATTATGGGCTTACCC
AGCTGCTCTTGATCATAGTTGCCCGACGAGATCCTGGCCAGTTGAT
BS08668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-PB | 1962 | CG2982-RB | 1133..1962 | 846..17 | 4150 | 100 | Minus |
| CG2982-PA | 1962 | CG2982-RA | 1133..1962 | 846..17 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 2242 | CG2982-RC | 1257..2087 | 846..16 | 4155 | 100 | Minus |
| CG2982-RB | 2246 | CG2982-RB | 1261..2091 | 846..16 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4320760..4321590 | 846..16 | 4155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:22:29 has no hits.
BS08668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:57 Download gff for
BS08668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PB | 1133..1962 | 17..846 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:41 Download gff for
BS08668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PA | 1133..1962 | 17..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:51:01 Download gff for
BS08668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 1261..2099 | 9..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:45 Download gff for
BS08668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 1261..2099 | 9..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:45 Download gff for
BS08668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4320760..4321598 | 9..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:51:01 Download gff for
BS08668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4214793..4215631 | 9..846 | 99 | | Minus |
BS08668.5prime Sequence
778 bp (777 high quality bases) assembled on 2006-01-11
> BS08668.5prime
GAAGTTATCAGTCGACATGAAAAAGGCGACTACTTCCGCGGCCGCCAAGT
CTCAAGGCAACAGCAAAATGCAGAAAAACGCAAATAACGGCACAGCTAAA
GACAAGAAGAAGCCCAATCTAGATAAAGAATCGAATGATTCCAATTCGGT
ATCTGATATGCTCGCCGTAACCAAGGACCAAGAGGTGCATGCCTTTTTCT
CTAAATTATTCGACGATGACGCCGGTCCATCAACATCCAAAAAGACCCAG
TCAGGGTCAGCCGCAGCCGCTAAGACCGCAGATCGCAAGCGACGTCTTCA
GGCCGAGGCGGATGCCAACAATAATGATACCGGAAAAGCCGGTAAGTTGA
CCAAGGAATCGGAAGCTACTCAAGGAGCCAGGGCCACCAAACGCAAGCAA
GCACGTAGTCTGGGACTGGAGCGCACCTCGCCGATCCAGGTTAATGGCGC
GGCTTTAGCCTGCCCTTTGGTGCGCAAATCGCTGCCCCCAGGGGAGGCCA
ATTCCTGTCCTCAGCCGCCCAAAAAGGACCCAGCAGCCGTGAACTCATTA
GTTAAAATAATTAAGGCGGAACCCACCGAAGAGGGCAATAATAACAATGA
CGAAAAGGAGACTGAAACAATAGAAACTCACAAAGCCGACAGCGTCGAAG
AGGGTCGTCGCGTCCTGCAGTGGATACTCTTTCCGGTCCAAACTAAAGTC
TTCTTCAAAGACTTCTGGGAGCACACCGCCTGCCTGGTGCAGCGCTCTAA
TCCCAAATACTTTCAAAGTATGATATCA
BS08668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-PB | 1962 | CG2982-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG2982-PA | 1962 | CG2982-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 2242 | CG2982-RC | 125..886 | 17..778 | 3810 | 100 | Plus |
| CG2982-RB | 2246 | CG2982-RB | 129..890 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4319628..4320389 | 17..778 | 3810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:44:14 has no hits.
BS08668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:58 Download gff for
BS08668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PB | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:43 Download gff for
BS08668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:53 Download gff for
BS08668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..889 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:26 Download gff for
BS08668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..889 | 17..777 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26 Download gff for
BS08668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4319628..4320388 | 17..777 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:53 Download gff for
BS08668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4213661..4214421 | 17..777 | 100 | | Plus |
BS08668.complete Sequence
1994 bp assembled on 2008-01-16
GenBank Submission: FJ636228
> BS08668.complete
GAAGTTATCAGTCGACATGAAAAAGGCGACTACTTCCGCGGCCGCCAAGT
CTCAAGGCAACAGCAAAATGCAGAAAAACGCAAATAACGGCACAGCTAAA
GACAAGAAGAAGCCCAATCTAGATAAAGAATCGAATGATTCCAATTCGGT
ATCTGATATGCTCGCCGTAACCAAGGACCAAGAGGTGCATGCCTTTTTCT
CTAAATTATTCGACGATGACGCCGGTCCATCAACATCCAAAAAGACCCAG
TCAGGGTCAGCCGCAGCCGCTAAGACCGCAGATCGCAAGCGACGTCTTCA
GGCCGAGGCGGATGCCAACAATAATGATACCGGAAAAGCCGGTAAGTTGA
CCAAGGAATCGGAAGCTACTCAAGGAGCCAGGGCCACCAAACGCAAGCAA
GCACGTAGTCTGGGACTGGAGCGCACCTCGCCGATCCAGGTTAATGGCGC
GGCTTTAGCCTGCCCTTTGGTGCGCAAATCGCTGCCCCCAGGGGAGGCCA
ATTCCTGTCCTCAGCCGCCCAAAAAGGACCCAGCAGCCGTGAACTCATTA
GTTAAAATAATTAAGGCGGAACCCACCGAAGAGGGCAATAATAACAATGA
CGAAAAGGAGACTGAAACAATAGAAACTCACAAAGCCGACAGCGTCGAAG
AGGGTCGTCGCGTCCTGCAGTGGATACTCTTTCCGGTCCAAACTAAAGTC
TTCTTCAAAGACTTCTGGGAGCACACCGCCTGCCTGGTGCAGCGCTCTAA
TCCCAAATACTTTCAAAGTATGATATCATTCAAGATGCTTGACGAAATAC
TGATTCGCCATCATTTGGACTTCACCGTCAACGTGGATGTGACCACTTAC
AAGAACGGCAAGCGTGAGACACTGAATCCCGAGGGTCGTGCCTTGCCACC
AGCTGTGTGGGGCTTCTATTCGGACGGCTGCAGCATTCGTTTACTGAATC
CTTCCACCTATCTAATTCGCTTGCGTCAGGTGTGCACCGTTTTGCAGGAG
TTCTTTCACTGCAAGGTGGGGGCAAATCTATACCTAACCCCACCCAATAG
CCAGGGCTTTGCGCCCCATTACGATGACATCGAGGCTTTCGTTATCCAAG
TGGAGGGACGCAAGCGCTGGCTTTTGTACGAGCCGCCCAAGAAGGCCGAT
CAACTGGCCAGGATCTCGTCGGGCAACTATGATCAAGAGCAGCTGGGTAA
GCCCATAATTGATGAGGTACTAAGCGCCGGCGATGTACTATATTTCCCGA
GAGGCGCTGTTCACCAGGCCATCACCGAAGAGCAACAGCACTCGCTGCAC
ATTACCTTGAGTGTTTACCAACAGCAGGCATATGCCAATCTTCTAGAGAC
ACTAATGCCCATGGTTCTTAAGAAGGCCGTCGATCGGAGTGTGGCCTTGC
GTCGCGGCTTGCCGCTGCACACTTTTCAAGTTTTGGGCAATGCCTACAAG
GGAAATGACTGCGGGTCGCGCAAACAGCTGGTGGAGAATGTGCAGAAGCT
GGTGACCAATTACTTGATGCCCTCCGAAGATGATATTGATGAGGCCGTCG
ACCAGATGGCCAAGAAGTTCCAGCACGAGGCACTTCCGCCGATCGTATTG
CCCTCGGAGGAGGTGCGCACTGTTCATGGGGCACGCAGTGATGCCGATGA
GCAGGGCAACTGCGTCTGCGATTACAAATTCAATAAAAAGACATCCGTGC
GCCTGCTGCGTGCCAACATTCTGCGTCTGGTGACCGAGTCCGATGGCAGC
GTGCGTATCTACCACCATGTGGACAATGGCCTGGATTACTGCAAGTACGA
GCCCTATTTCATGGAGATTCTGCCAGAGGAAGCTAAAGCCGTTGAGCTCC
TCATATCGGCCTATCCATTTTACCTCACCATTGATCAGTTGCCATTGGAG
TCTTCAGCTCGCAAGATAGAGGTCGCCACCGCCCTGTGGGAGCATGGTCT
TCTTATGACCGAGAAGCCGTTTAAGTAGAAGCTTTCTAGACCAT
BS08668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 1962 | CG2982-PC | 1..1962 | 17..1978 | 9810 | 100 | Plus |
| CG2982-RB | 1962 | CG2982-PB | 1..1962 | 17..1978 | 9810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 2242 | CG2982-RC | 125..2087 | 17..1979 | 9815 | 100 | Plus |
| CG2982-RB | 2246 | CG2982-RB | 129..2091 | 17..1979 | 9815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4319628..4321590 | 17..1979 | 9815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:10:09 has no hits.
BS08668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:35 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RA | 1..1962 | 17..1978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:02 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RA | 74..2035 | 17..1978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:17 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..2090 | 17..1978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:35 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RA | 74..2044 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:22 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..2090 | 17..1978 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:22 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4319628..4321589 | 17..1978 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:17 Download gff for
BS08668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4213661..4215622 | 17..1978 | 100 | | Plus |
BS08668.pep Sequence
Translation from 16 to 1977
> BS08668.pep
MKKATTSAAAKSQGNSKMQKNANNGTAKDKKKPNLDKESNDSNSVSDMLA
VTKDQEVHAFFSKLFDDDAGPSTSKKTQSGSAAAAKTADRKRRLQAEADA
NNNDTGKAGKLTKESEATQGARATKRKQARSLGLERTSPIQVNGAALACP
LVRKSLPPGEANSCPQPPKKDPAAVNSLVKIIKAEPTEEGNNNNDEKETE
TIETHKADSVEEGRRVLQWILFPVQTKVFFKDFWEHTACLVQRSNPKYFQ
SMISFKMLDEILIRHHLDFTVNVDVTTYKNGKRETLNPEGRALPPAVWGF
YSDGCSIRLLNPSTYLIRLRQVCTVLQEFFHCKVGANLYLTPPNSQGFAP
HYDDIEAFVIQVEGRKRWLLYEPPKKADQLARISSGNYDQEQLGKPIIDE
VLSAGDVLYFPRGAVHQAITEEQQHSLHITLSVYQQQAYANLLETLMPMV
LKKAVDRSVALRRGLPLHTFQVLGNAYKGNDCGSRKQLVENVQKLVTNYL
MPSEDDIDEAVDQMAKKFQHEALPPIVLPSEEVRTVHGARSDADEQGNCV
CDYKFNKKTSVRLLRANILRLVTESDGSVRIYHHVDNGLDYCKYEPYFME
ILPEEAKAVELLISAYPFYLTIDQLPLESSARKIEVATALWEHGLLMTEK
PFK*
BS08668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-PC | 653 | CG2982-PC | 1..653 | 1..653 | 3390 | 100 | Plus |
| CG2982-PB | 653 | CG2982-PB | 1..653 | 1..653 | 3390 | 100 | Plus |
