Clone BS08669 Report

Search the DGRC for BS08669

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptSam-S-RA
Protein status:BS08669.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08669.3prime Sequence

885 bp (873 high quality bases) assembled on 2006-01-11

> BS08669.3prime
ATGGTCTAGAAAGCTTTCAGTTGTCAATCTCCAGAGGCTTGGCCTCCTCC
CACGAGAAGCCCGCGCGACCGAAGTGTCCATAAGTGCTTGTTCGCTGGTA
TATCGGCTGGCGCAGGTTTAGGTCCTTGACAATCTTGCCGGGCCTGAGGT
CAAAGTTTCGACGGATGATATCCAGAAGTTCTTTTTGTGACTTGTGAGAA
GTTCCGTAGTCGAACACAGTTATGGAGAGAGGCTCAGCAAGACCTATGGC
GTAGGACACTTGGACAAGGCAGCGCTTGCAGAGACCGGCCTTAACCAGTG
ATTTGGCCACCCAGCGTGCTGCATATGCAGCTGATCTGTCAACCTTGGTG
AAGTCCTTGCCAGAGAATGCACCGCCGCCGTGGGCGCCCCAGCCTCCGTA
AGTATCTACAATGATTTTTCTTCCTGTAAGCCCAGCGTCACCCATTGGTC
CACCGATTACAAAAAGCCCACAAGGATTGATGTGGACAATGGTGTTGGCA
TCAATGTATTTGGCGGGAATGACTACTTTAACAACTTTCTCCATTACTTC
CGAGCGCAGGGTTTCTAACGATATCTTTTCAGAATGCTGCATGGACACTA
CAATAGTGTGGACACGCTTGGGAACTGCTGATCCCTGATTGAAGAGGTAC
TCGCAGGTTACTTGTGTTTTGGAATCGGGGCGAGCCCACCAGAACACATC
TGAGCGACGCAGCTCAGCAATCTTTTCGTTTAGTTTGTGAGCCAAAACGA
CGGTTAGGGGCATACATTCCTCGGTTTCGTCGGTGGCATATCCAAACATG
ATACCCTGATCTCCGGCACCGATCTCTTCCTCGGCACGGTTGACATGCAC
TCCCGCAGCGATCTCAGGCGATTGTTGGTCCATGC

BS08669.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2674-PD 1227 M(2)21AB-RD 362..1227 882..17 4330 100 Minus
CG2674-PH 1227 M(2)21AB-RH 362..1227 882..17 4330 100 Minus
CG2674-PF 1227 M(2)21AB-RF 362..1227 882..17 4330 100 Minus
CG2674-PI 1227 M(2)21AB-RI 362..1227 882..17 4330 100 Minus
CG2674-PA 1227 M(2)21AB-RA 362..1227 882..17 4330 100 Minus
CG2674-PE 1227 M(2)21AB-RE 362..1227 882..17 4330 100 Minus
CG2674-PC 1227 M(2)21AB-RC 436..1227 808..17 3960 100 Minus
CG2674-PJ 1227 M(2)21AB-RJ 436..1227 808..17 3960 100 Minus
CG2674-PG 1146 M(2)21AB-RG 355..1146 808..17 3960 100 Minus
CG2674-PB 603 M(2)21AB-RB 475..603 882..754 645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 2387 CG2674-RE 632..1497 882..17 4330 100 Minus
Sam-S-RA 2293 CG2674-RA 538..1403 882..17 4330 100 Minus
Sam-S-RB 2184 CG2674-RB 651..1516 882..17 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 112687..113370 808..125 3420 100 Minus
2L 23513712 2L 113434..113542 125..17 545 100 Minus
2L 23513712 2L 111943..112020 882..805 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:32:10 has no hits.

BS08669.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:46:59 Download gff for BS08669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PI 358..1227 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:44 Download gff for BS08669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PF 358..1227 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:40 Download gff for BS08669.3prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RB 647..1516 17..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:51 Download gff for BS08669.3prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RB 647..1516 17..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:51 Download gff for BS08669.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 111939..112019 806..885 98 -> Minus
2L 112690..113369 126..805 100 -> Minus
2L 113434..113542 17..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:40 Download gff for BS08669.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 111939..112019 806..885 98 -> Minus
arm_2L 112690..113369 126..805 100 -> Minus
arm_2L 113434..113542 17..125 100   Minus

BS08669.5prime Sequence

877 bp (832 high quality bases) assembled on 2006-01-11

> BS08669.5prime
GAAGTTATCAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACG
GATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACA
TTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTG
CGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAA
ACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTG
TGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCG
TGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATT
TCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATC
GCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGA
TCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGC
CCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTG
CGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGT
AACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCC
ACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACC
CTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAA
ATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTG
TAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATT
GTAGATACTTACGGAGGCTGGGGCGCC

BS08669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2674-PD 1227 M(2)21AB-RD 1..861 17..877 4305 100 Plus
CG2674-PH 1227 M(2)21AB-RH 1..861 17..877 4305 100 Plus
CG2674-PF 1227 M(2)21AB-RF 1..861 17..877 4305 100 Plus
CG2674-PI 1227 M(2)21AB-RI 1..861 17..877 4305 100 Plus
CG2674-PA 1227 M(2)21AB-RA 1..861 17..877 4305 100 Plus
CG2674-PE 1227 M(2)21AB-RE 1..861 17..877 4305 100 Plus
CG2674-PC 1227 M(2)21AB-RC 436..861 452..877 2130 100 Plus
CG2674-PJ 1227 M(2)21AB-RJ 436..861 452..877 2130 100 Plus
CG2674-PG 1146 M(2)21AB-RG 355..780 452..877 2130 100 Plus
CG2674-PC 1227 M(2)21AB-RC 1..334 17..350 1670 100 Plus
CG2674-PJ 1227 M(2)21AB-RJ 1..334 17..350 1670 100 Plus
CG2674-PB 603 M(2)21AB-RB 1..334 17..350 1670 100 Plus
CG2674-PG 1146 M(2)21AB-RG 43..253 140..350 1055 100 Plus
CG2674-PB 603 M(2)21AB-RB 438..603 341..506 830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 2387 CG2674-RE 269..1131 15..877 4315 100 Plus
Sam-S-RA 2293 CG2674-RA 175..1037 15..877 4315 100 Plus
Sam-S-RI 2429 CG2674-RI 311..1173 15..877 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 112687..113112 452..877 2130 100 Plus
2L 23513712 2L 108684..108809 15..140 630 100 Plus
2L 23513712 2L 110754..110879 218..343 630 100 Plus
2L 23513712 2L 111906..112020 341..455 575 100 Plus
2L 23513712 2L 110404..110483 139..218 400 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:00:32 has no hits.

BS08669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:00 Download gff for BS08669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PI 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:45 Download gff for BS08669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PF 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:55 Download gff for BS08669.5prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 306..1173 9..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:30 Download gff for BS08669.5prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 306..1173 9..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:30 Download gff for BS08669.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 108679..108809 9..140 98 -> Plus
2L 110406..110483 141..218 100 -> Plus
2L 110755..110877 219..341 100 -> Plus
2L 111907..112019 342..454 100 -> Plus
2L 112690..113112 455..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:55 Download gff for BS08669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 111907..112019 342..454 100 -> Plus
arm_2L 108679..108809 9..140 98 -> Plus
arm_2L 110406..110483 141..218 100 -> Plus
arm_2L 110755..110877 219..341 100 -> Plus
arm_2L 112690..113112 455..877 100   Plus

BS08669.complete Sequence

1259 bp assembled on 2007-10-17

GenBank Submission: FJ636229

> BS08669.complete
GAAGTTATCAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACG
GATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACA
TTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTG
CGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAA
ACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTG
TGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCG
TGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATT
TCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATC
GCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGA
TCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGC
CCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTG
CGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGT
AACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCC
ACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACC
CTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAA
ATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTG
TAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATT
GTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATTCTCTGG
CAAGGACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCACGCTGGG
TGGCCAAATCACTGGTTAAGGCCGGTCTCTGCAAGCGCTGCCTTGTCCAA
GTGTCCTACGCCATAGGTCTTGCTGAGCCTCTCTCCATAACTGTGTTCGA
CTACGGAACTTCTCACAAGTCACAAAAAGAACTTCTGGATATCATCCGTC
GAAACTTTGACCTCAGGCCCGGCAAGATTGTCAAGGACCTAAACCTGCGC
CAGCCGATATACCAGCGAACAAGCACTTATGGACACTTCGGTCGCGCGGG
CTTCTCGTGGGAGGAGGCCAAGCCTCTGGAGATTGACAACTGAAAGCTTT
CTAGACCAT

BS08669.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 1227 CG2674-PE 1..1227 17..1243 6135 100 Plus
Sam-S-RA 1227 CG2674-PA 1..1227 17..1243 6135 100 Plus
Sam-S-RI 1227 CG2674-PI 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 2387 CG2674-RE 269..1497 15..1243 6145 100 Plus
Sam-S-RA 2293 CG2674-RA 175..1403 15..1243 6145 100 Plus
Sam-S-RI 2429 CG2674-RI 311..1539 15..1243 6145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 112687..113370 452..1135 3420 100 Plus
2L 23513712 2L 108684..108809 15..140 630 100 Plus
2L 23513712 2L 110754..110879 218..343 630 100 Plus
2L 23513712 2L 111906..112020 341..455 575 100 Plus
2L 23513712 2L 113434..113542 1135..1243 545 100 Plus
2L 23513712 2L 110404..110483 139..218 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:52 has no hits.

BS08669.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:36 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RF 1..1227 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:12 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RH 400..1625 17..1242 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:20 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 313..1538 17..1242 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:36 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RH 393..1626 9..1243 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:25 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 313..1538 17..1242 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:25 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
2L 108686..108809 17..140 100 -> Plus
2L 110406..110483 141..218 100 -> Plus
2L 110755..110877 219..341 100 -> Plus
2L 111907..112019 342..454 100 -> Plus
2L 112690..113369 455..1134 100 -> Plus
2L 113434..113541 1135..1242 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:20 Download gff for BS08669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 108686..108809 17..140 100 -> Plus
arm_2L 110406..110483 141..218 100 -> Plus
arm_2L 110755..110877 219..341 100 -> Plus
arm_2L 111907..112019 342..454 100 -> Plus
arm_2L 112690..113369 455..1134 100 -> Plus
arm_2L 113434..113541 1135..1242 100   Plus

BS08669.pep Sequence

Translation from 16 to 1242

> BS08669.pep
MPQKTNGHSANGCNGSNGNSYDMEDGATFLFTSESVGEGHPDKMCDQISD
AILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQH
IGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMF
GYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYL
FNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDAN
TIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTK
VDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH
KSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEE
AKPLEIDN*

BS08669.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-PE 408 CG2674-PE 1..408 1..408 2144 100 Plus
Sam-S-PA 408 CG2674-PA 1..408 1..408 2144 100 Plus
Sam-S-PI 408 CG2674-PI 1..408 1..408 2144 100 Plus
Sam-S-PF 408 CG2674-PF 1..408 1..408 2144 100 Plus
Sam-S-PH 408 CG2674-PH 1..408 1..408 2144 100 Plus