Clone BS08671 Report

Search the DGRC for BS08671

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG7102-RA
Protein status:BS08671.pep: full length peptide match
Sequenced Size:1580

Clone Sequence Records

BS08671.3prime Sequence

945 bp (787 high quality bases) assembled on 2006-01-11

> BS08671.3prime
ATGGTCTAGAAAGCTTCTAGTATCTATCGTATTTTGCCTTTGTGGGCACC
CCAGGAGCTTGGCCGTTTGTTGAGTGGTTCAGGTTCTGATTATTGCTGTG
ATTTGCTCCACTATTACTACTTCCTGCCGGCGAGGAAAGGGTATAGACCT
CATAGTCGGTGATGGTAAAGTTATAGTCCCCGAAAAGTGTCAGGTGAGCA
GCGTTGGTTCCGTCGTAGGAATGCGGAAGATTCGAGTATGAGTCCATGTT
TGTATTACAGTTGCTGGAAATGAGCAGATCGGCTCCAGCACCAAAAATGG
GACCGCAATCAGGATGATAGCAAATGGCATATGGTTTCTTTACAATATCA
AACTTGACCGGCTGTTCCCCATTGGCTGGATTCAAGGCAAAGAGGAAGGC
TCGCTCGGACTGAACATATCCCCCCTTTCGGCTTGTTTTGGCCCACGCCA
CATCCGTATAACCACCACTGATCTCTCCATGCGATCCCAAGCCAATAACC
ATGCAAGGAGCCACGCCGTCGCAATAACGATGAAAGGCTCCAGAATCGTA
GCCATGAGTGGACGCTCGGAAAACTAATCTCCAGGATTGCTTGCCCACTC
CAACCCAATTATTGAGAACAGTCTGTAGTGCCAGATTGTCATTCTTCAGG
ATTTGGGATCCGGGAAACATGTTGACCGCTACAGCTAGGCGGGGCTGAAG
TCTCTTATCGTTATCCATCATCTTATTGGCATGCAAAGCGGCATAGCGAT
ATCGTTCTAGGGATAGTTCCATAGGTACAGCTCCTGTAGGTTCCACTTCC
TCCGCGAAAACTTGGCTATCGATGAGAAGCAGACGCACGTGACCCATTAC
ACCGCTTAAGTGTTGGCAGACACGAGCACGCTCCTCCTCAGTCAAATGTG
CAGTGGGTTGGGTGACTCCTGCCTGGATTTTGGCCCAGGATAAAA

BS08671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PA 1548 CG7102-RA 620..1548 945..17 4570 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 2264 CG7102-RB 1081..2011 945..15 4610 99.7 Minus
CG7102-RA 2075 CG7102-RA 1081..2011 945..15 4610 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7883911..7884547 309..945 3140 99.5 Plus
2L 23513712 2L 7883535..7883828 15..308 1470 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:42:12 has no hits.

BS08671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:03 Download gff for BS08671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 624..1548 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:50 Download gff for BS08671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 624..1548 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:41 Download gff for BS08671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1085..2013 11..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:37 Download gff for BS08671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1085..2013 11..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:37 Download gff for BS08671.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7883533..7883828 11..308 99 <- Plus
2L 7883911..7884543 309..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:41 Download gff for BS08671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7883533..7883828 11..308 99 <- Plus
arm_2L 7883911..7884543 309..941 99   Plus

BS08671.5prime Sequence

871 bp (869 high quality bases) assembled on 2006-01-11

> BS08671.5prime
GAAGTTATCAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGC
GCCTTTCCGAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGA
GATGAGCGCATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAG
CTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAG
TATCGCCAGCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCA
CACGTGAATCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGC
AAAGTTGGTTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCAC
AGGATATCGGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATA
TCGACATTGTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGA
TATACACGAAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCT
GCATCATCTACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCC
TTCCTTACTTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTA
TTTCTGCTTGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCA
AATACCAGGCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAG
CGTGCTCGTGTCTGCCAACACTTAAGCGGTGTAATGGGTCACGTGCGTCT
GCTTCTCATCGATAGCCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAG
CTGTACCTATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTTGCAT
GCCAATAAGATGATGGATAAC

BS08671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PA 1548 CG7102-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 2264 CG7102-RB 461..1316 16..871 4280 100 Plus
CG7102-RA 2075 CG7102-RA 461..1316 16..871 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7884312..7884581 871..602 1350 100 Minus
2L 23513712 2L 7886306..7886472 469..303 835 100 Minus
2L 23513712 2L 7886535..7886698 304..141 820 100 Minus
2L 23513712 2L 7884655..7884791 601..465 685 100 Minus
2L 23513712 2L 7886926..7887053 143..16 640 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:37:41 has no hits.

BS08671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:05 Download gff for BS08671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:51 Download gff for BS08671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:22 Download gff for BS08671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 455..1316 7..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:55 Download gff for BS08671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 455..1316 7..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:55 Download gff for BS08671.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7884312..7884581 602..871 100 <- Minus
2L 7884655..7884788 468..601 100 <- Minus
2L 7886308..7886470 305..467 100 <- Minus
2L 7886535..7886697 142..304 100 <- Minus
2L 7886928..7887059 7..141 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:22 Download gff for BS08671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7884312..7884581 602..871 100 <- Minus
arm_2L 7884655..7884788 468..601 100 <- Minus
arm_2L 7886308..7886470 305..467 100 <- Minus
arm_2L 7886535..7886697 142..304 100 <- Minus
arm_2L 7886928..7887059 7..141 97   Minus

BS08671.complete Sequence

1580 bp assembled on 2008-08-15

GenBank Submission: FJ636230

> BS08671.complete
GAAGTTATCAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGC
GCCTTTCCGAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGA
GATGAGCGCATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAG
CTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAG
TATCGCCAGCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCA
CACGTGAATCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGC
AAAGTTGGTTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCAC
AGGATATCGGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATA
TCGACATTGTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGA
TATACACGAAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCT
GCATCATCTACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCC
TTCCTTACTTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTA
TTTCTGCTTGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCA
AATACCAGGCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAG
CGTGCTCGTGTCTGCCAACACTTAAGCGGTGTAATGGGTCACGTGCGTCT
GCTTCTCATCGATAGCCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAG
CTGTACCTATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTTGCAT
GCCAATAAGATGATGGATAACGATAAGAGACTTCAGCCCCGCCTAGCTGT
AGCGGTCAACATGTTTCCCGGATCCCAAATCCTGAAGAATGACAATCTGG
CACTACAGACTGTTCTCAATAATTGGGTTGGAGTGGGCAAGCAATCCTGG
AGATTAGTTTTCCGAGCGTCCACTCATGGCTACGATTCTGGAGCCTTTCA
TCGTTATTGCGACGGCGTGGCTCCTTGCATGGTTATTGGCTTGGGATCGC
ATGGAGAGATCAGTGGTGGTTATACGGATGTGGCGTGGGCCAAAACAAGC
CGAAAGGGGGGATATGTTCAGTCCGAGCGAGCCTTCCTCTTTGCCTTGAA
TCCAGCCAATGGGGAACAGCCGGTCAAGTTTGATATTGTAAAGAAACCAT
ATGCCATTTGCTATCATCCTGATTGCGGTCCCATTTTTGGTGCTGGAGCC
GATCTGCTCATTTCCAGCAACTGTAATACAAACATGGACTCATACTCGAA
TCTTCCGCATTCCTACGACGGAACCAACGCTGCTCACCTGACACTTTTCG
GGGACTATAACTTTACCATCACCGACTATGAGGTCTATACCCTTTCCTCG
CCGGCAGGAAGTAGTAATAGTGGAGCAAATCACAGCAATAATCAGAACCT
GAACCACTCAACAAACGGCCAAGCTCCTGGGGTGCCCACAAAGGCAAAAT
ACGATAGATACTAGAAGCTTTCTAGACCAT

BS08671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 1548 CG7102-PB 1..1548 17..1564 7740 100 Plus
CG7102-RA 1548 CG7102-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 2264 CG7102-RB 461..2011 16..1566 7755 100 Plus
CG7102-RA 2075 CG7102-RA 461..2011 16..1566 7755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7883911..7884581 1272..602 3355 100 Minus
2L 23513712 2L 7883535..7883828 1566..1273 1470 100 Minus
2L 23513712 2L 7886306..7886472 469..303 835 100 Minus
2L 23513712 2L 7886535..7886698 304..141 820 100 Minus
2L 23513712 2L 7884655..7884791 601..465 685 100 Minus
2L 23513712 2L 7886926..7887053 143..16 640 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:09:13 has no hits.

BS08671.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:42 Download gff for BS08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 431..1989 7..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:53 Download gff for BS08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 462..2009 17..1564 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:51 Download gff for BS08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 438..1985 17..1564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:02 Download gff for BS08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 462..2009 17..1564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:02 Download gff for BS08671.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7883537..7883828 1273..1564 100 <- Minus
2L 7883911..7884581 602..1272 100 <- Minus
2L 7884655..7884788 468..601 100 <- Minus
2L 7886308..7886470 305..467 100 <- Minus
2L 7886535..7886697 142..304 100 <- Minus
2L 7886928..7887052 17..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:53 Download gff for BS08671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7886535..7886697 142..304 100 <- Minus
arm_2L 7886928..7887052 17..141 100   Minus
arm_2L 7883537..7883828 1273..1564 100 <- Minus
arm_2L 7883911..7884581 602..1272 100 <- Minus
arm_2L 7884655..7884788 468..601 100 <- Minus
arm_2L 7886308..7886470 305..467 100 <- Minus

BS08671.pep Sequence

Translation from 16 to 1563

> BS08671.pep
MSLPQLIEDLQRLSEDQDSADVVFICGRDERIYAHRLMLMARCKSFKTAK
RGEVCRIPGCTVSPAAPGASTPTTIRLPHVNPELFRQFILYVYTAKLVLQ
DSQVFQMMILAQDIGVVELRTACEDHVISTLSVDNACTFLTAVMDIHEKA
GAKCAASFMERCIIYIGENANECVKTNAFLTLTKDAIIKIISSDYFCLEE
EEVWRCVLSWAKYQAGVTQPTAHWTEEERARVCQHLSGVMGHVRLLLIDS
QVFAEEVEPTGAVPMELSLERYRYAALHANKMMDNDKRLQPRLAVAVNMF
PGSQILKNDNLALQTVLNNWVGVGKQSWRLVFRASTHGYDSGAFHRYCDG
VAPCMVIGLGSHGEISGGYTDVAWAKTSRKGGYVQSERAFLFALNPANGE
QPVKFDIVKKPYAICYHPDCGPIFGAGADLLISSNCNTNMDSYSNLPHSY
DGTNAAHLTLFGDYNFTITDYEVYTLSSPAGSSNSGANHSNNQNLNHSTN
GQAPGVPTKAKYDRY*

BS08671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PB 515 CG7102-PB 1..515 1..515 2730 100 Plus
CG7102-PA 515 CG7102-PA 1..515 1..515 2730 100 Plus
BTBD9-PB 722 CG1826-PB 35..260 9..270 198 24.1 Plus
BTBD9-PA 722 CG1826-PA 35..260 9..270 198 24.1 Plus
gprs-PF 367 CG18471-PF 26..326 6..290 176 20.8 Plus