Clone Sequence Records
BS08671.3prime Sequence
945 bp (787 high quality bases) assembled on 2006-01-11
> BS08671.3prime
ATGGTCTAGAAAGCTTCTAGTATCTATCGTATTTTGCCTTTGTGGGCACC
CCAGGAGCTTGGCCGTTTGTTGAGTGGTTCAGGTTCTGATTATTGCTGTG
ATTTGCTCCACTATTACTACTTCCTGCCGGCGAGGAAAGGGTATAGACCT
CATAGTCGGTGATGGTAAAGTTATAGTCCCCGAAAAGTGTCAGGTGAGCA
GCGTTGGTTCCGTCGTAGGAATGCGGAAGATTCGAGTATGAGTCCATGTT
TGTATTACAGTTGCTGGAAATGAGCAGATCGGCTCCAGCACCAAAAATGG
GACCGCAATCAGGATGATAGCAAATGGCATATGGTTTCTTTACAATATCA
AACTTGACCGGCTGTTCCCCATTGGCTGGATTCAAGGCAAAGAGGAAGGC
TCGCTCGGACTGAACATATCCCCCCTTTCGGCTTGTTTTGGCCCACGCCA
CATCCGTATAACCACCACTGATCTCTCCATGCGATCCCAAGCCAATAACC
ATGCAAGGAGCCACGCCGTCGCAATAACGATGAAAGGCTCCAGAATCGTA
GCCATGAGTGGACGCTCGGAAAACTAATCTCCAGGATTGCTTGCCCACTC
CAACCCAATTATTGAGAACAGTCTGTAGTGCCAGATTGTCATTCTTCAGG
ATTTGGGATCCGGGAAACATGTTGACCGCTACAGCTAGGCGGGGCTGAAG
TCTCTTATCGTTATCCATCATCTTATTGGCATGCAAAGCGGCATAGCGAT
ATCGTTCTAGGGATAGTTCCATAGGTACAGCTCCTGTAGGTTCCACTTCC
TCCGCGAAAACTTGGCTATCGATGAGAAGCAGACGCACGTGACCCATTAC
ACCGCTTAAGTGTTGGCAGACACGAGCACGCTCCTCCTCAGTCAAATGTG
CAGTGGGTTGGGTGACTCCTGCCTGGATTTTGGCCCAGGATAAAA
BS08671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-PA | 1548 | CG7102-RA | 620..1548 | 945..17 | 4570 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-RB | 2264 | CG7102-RB | 1081..2011 | 945..15 | 4610 | 99.7 | Minus |
CG7102-RA | 2075 | CG7102-RA | 1081..2011 | 945..15 | 4610 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7883911..7884547 | 309..945 | 3140 | 99.5 | Plus |
2L | 23513712 | 2L | 7883535..7883828 | 15..308 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:42:12 has no hits.
BS08671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:03 Download gff for
BS08671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-PA | 624..1548 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:50 Download gff for
BS08671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-PA | 624..1548 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:41 Download gff for
BS08671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 1085..2013 | 11..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:37 Download gff for
BS08671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 1085..2013 | 11..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:37 Download gff for
BS08671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7883533..7883828 | 11..308 | 99 | <- | Plus |
2L | 7883911..7884543 | 309..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:41 Download gff for
BS08671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7883533..7883828 | 11..308 | 99 | <- | Plus |
arm_2L | 7883911..7884543 | 309..941 | 99 | | Plus |
BS08671.5prime Sequence
871 bp (869 high quality bases) assembled on 2006-01-11
> BS08671.5prime
GAAGTTATCAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGC
GCCTTTCCGAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGA
GATGAGCGCATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAG
CTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAG
TATCGCCAGCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCA
CACGTGAATCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGC
AAAGTTGGTTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCAC
AGGATATCGGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATA
TCGACATTGTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGA
TATACACGAAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCT
GCATCATCTACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCC
TTCCTTACTTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTA
TTTCTGCTTGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCA
AATACCAGGCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAG
CGTGCTCGTGTCTGCCAACACTTAAGCGGTGTAATGGGTCACGTGCGTCT
GCTTCTCATCGATAGCCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAG
CTGTACCTATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTTGCAT
GCCAATAAGATGATGGATAAC
BS08671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-PA | 1548 | CG7102-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-RB | 2264 | CG7102-RB | 461..1316 | 16..871 | 4280 | 100 | Plus |
CG7102-RA | 2075 | CG7102-RA | 461..1316 | 16..871 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7884312..7884581 | 871..602 | 1350 | 100 | Minus |
2L | 23513712 | 2L | 7886306..7886472 | 469..303 | 835 | 100 | Minus |
2L | 23513712 | 2L | 7886535..7886698 | 304..141 | 820 | 100 | Minus |
2L | 23513712 | 2L | 7884655..7884791 | 601..465 | 685 | 100 | Minus |
2L | 23513712 | 2L | 7886926..7887053 | 143..16 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:37:41 has no hits.
BS08671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:05 Download gff for
BS08671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:51 Download gff for
BS08671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:36:22 Download gff for
BS08671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 455..1316 | 7..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:55 Download gff for
BS08671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 455..1316 | 7..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:55 Download gff for
BS08671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7884312..7884581 | 602..871 | 100 | <- | Minus |
2L | 7884655..7884788 | 468..601 | 100 | <- | Minus |
2L | 7886308..7886470 | 305..467 | 100 | <- | Minus |
2L | 7886535..7886697 | 142..304 | 100 | <- | Minus |
2L | 7886928..7887059 | 7..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:36:22 Download gff for
BS08671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7884312..7884581 | 602..871 | 100 | <- | Minus |
arm_2L | 7884655..7884788 | 468..601 | 100 | <- | Minus |
arm_2L | 7886308..7886470 | 305..467 | 100 | <- | Minus |
arm_2L | 7886535..7886697 | 142..304 | 100 | <- | Minus |
arm_2L | 7886928..7887059 | 7..141 | 97 | | Minus |
BS08671.complete Sequence
1580 bp assembled on 2008-08-15
GenBank Submission: FJ636230
> BS08671.complete
GAAGTTATCAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGC
GCCTTTCCGAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGA
GATGAGCGCATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAG
CTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAG
TATCGCCAGCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCA
CACGTGAATCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGC
AAAGTTGGTTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCAC
AGGATATCGGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATA
TCGACATTGTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGA
TATACACGAAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCT
GCATCATCTACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCC
TTCCTTACTTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTA
TTTCTGCTTGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCA
AATACCAGGCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAG
CGTGCTCGTGTCTGCCAACACTTAAGCGGTGTAATGGGTCACGTGCGTCT
GCTTCTCATCGATAGCCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAG
CTGTACCTATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTTGCAT
GCCAATAAGATGATGGATAACGATAAGAGACTTCAGCCCCGCCTAGCTGT
AGCGGTCAACATGTTTCCCGGATCCCAAATCCTGAAGAATGACAATCTGG
CACTACAGACTGTTCTCAATAATTGGGTTGGAGTGGGCAAGCAATCCTGG
AGATTAGTTTTCCGAGCGTCCACTCATGGCTACGATTCTGGAGCCTTTCA
TCGTTATTGCGACGGCGTGGCTCCTTGCATGGTTATTGGCTTGGGATCGC
ATGGAGAGATCAGTGGTGGTTATACGGATGTGGCGTGGGCCAAAACAAGC
CGAAAGGGGGGATATGTTCAGTCCGAGCGAGCCTTCCTCTTTGCCTTGAA
TCCAGCCAATGGGGAACAGCCGGTCAAGTTTGATATTGTAAAGAAACCAT
ATGCCATTTGCTATCATCCTGATTGCGGTCCCATTTTTGGTGCTGGAGCC
GATCTGCTCATTTCCAGCAACTGTAATACAAACATGGACTCATACTCGAA
TCTTCCGCATTCCTACGACGGAACCAACGCTGCTCACCTGACACTTTTCG
GGGACTATAACTTTACCATCACCGACTATGAGGTCTATACCCTTTCCTCG
CCGGCAGGAAGTAGTAATAGTGGAGCAAATCACAGCAATAATCAGAACCT
GAACCACTCAACAAACGGCCAAGCTCCTGGGGTGCCCACAAAGGCAAAAT
ACGATAGATACTAGAAGCTTTCTAGACCAT
BS08671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-RB | 1548 | CG7102-PB | 1..1548 | 17..1564 | 7740 | 100 | Plus |
CG7102-RA | 1548 | CG7102-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-RB | 2264 | CG7102-RB | 461..2011 | 16..1566 | 7755 | 100 | Plus |
CG7102-RA | 2075 | CG7102-RA | 461..2011 | 16..1566 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7883911..7884581 | 1272..602 | 3355 | 100 | Minus |
2L | 23513712 | 2L | 7883535..7883828 | 1566..1273 | 1470 | 100 | Minus |
2L | 23513712 | 2L | 7886306..7886472 | 469..303 | 835 | 100 | Minus |
2L | 23513712 | 2L | 7886535..7886698 | 304..141 | 820 | 100 | Minus |
2L | 23513712 | 2L | 7884655..7884791 | 601..465 | 685 | 100 | Minus |
2L | 23513712 | 2L | 7886926..7887053 | 143..16 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:09:13 has no hits.
BS08671.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:42 Download gff for
BS08671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 431..1989 | 7..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:53 Download gff for
BS08671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 462..2009 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:51 Download gff for
BS08671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 438..1985 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:02 Download gff for
BS08671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7102-RA | 462..2009 | 17..1564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:02 Download gff for
BS08671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7883537..7883828 | 1273..1564 | 100 | <- | Minus |
2L | 7883911..7884581 | 602..1272 | 100 | <- | Minus |
2L | 7884655..7884788 | 468..601 | 100 | <- | Minus |
2L | 7886308..7886470 | 305..467 | 100 | <- | Minus |
2L | 7886535..7886697 | 142..304 | 100 | <- | Minus |
2L | 7886928..7887052 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:53 Download gff for
BS08671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7886535..7886697 | 142..304 | 100 | <- | Minus |
arm_2L | 7886928..7887052 | 17..141 | 100 | | Minus |
arm_2L | 7883537..7883828 | 1273..1564 | 100 | <- | Minus |
arm_2L | 7883911..7884581 | 602..1272 | 100 | <- | Minus |
arm_2L | 7884655..7884788 | 468..601 | 100 | <- | Minus |
arm_2L | 7886308..7886470 | 305..467 | 100 | <- | Minus |
BS08671.pep Sequence
Translation from 16 to 1563
> BS08671.pep
MSLPQLIEDLQRLSEDQDSADVVFICGRDERIYAHRLMLMARCKSFKTAK
RGEVCRIPGCTVSPAAPGASTPTTIRLPHVNPELFRQFILYVYTAKLVLQ
DSQVFQMMILAQDIGVVELRTACEDHVISTLSVDNACTFLTAVMDIHEKA
GAKCAASFMERCIIYIGENANECVKTNAFLTLTKDAIIKIISSDYFCLEE
EEVWRCVLSWAKYQAGVTQPTAHWTEEERARVCQHLSGVMGHVRLLLIDS
QVFAEEVEPTGAVPMELSLERYRYAALHANKMMDNDKRLQPRLAVAVNMF
PGSQILKNDNLALQTVLNNWVGVGKQSWRLVFRASTHGYDSGAFHRYCDG
VAPCMVIGLGSHGEISGGYTDVAWAKTSRKGGYVQSERAFLFALNPANGE
QPVKFDIVKKPYAICYHPDCGPIFGAGADLLISSNCNTNMDSYSNLPHSY
DGTNAAHLTLFGDYNFTITDYEVYTLSSPAGSSNSGANHSNNQNLNHSTN
GQAPGVPTKAKYDRY*
BS08671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7102-PB | 515 | CG7102-PB | 1..515 | 1..515 | 2730 | 100 | Plus |
CG7102-PA | 515 | CG7102-PA | 1..515 | 1..515 | 2730 | 100 | Plus |
BTBD9-PB | 722 | CG1826-PB | 35..260 | 9..270 | 198 | 24.1 | Plus |
BTBD9-PA | 722 | CG1826-PA | 35..260 | 9..270 | 198 | 24.1 | Plus |
gprs-PF | 367 | CG18471-PF | 26..326 | 6..290 | 176 | 20.8 | Plus |