Clone Sequence Records
BS08672.3prime Sequence
885 bp (767 high quality bases) assembled on 2006-01-11
> BS08672.3prime
ATGGTCTAGAAAGCTTTTATTCACTTCGTCCAATTGTCTGTCTGATTACT
TTTTTGAGCTGCTCATGCCAGAGAAGGAAGCAGGGTTCCTGGCATAGACC
CGGCTTATCGGGACAGGTGTTGCACATGTACCTGCTGAACTGCAGCATTC
CGCCTTTGTGGCAATAGCGGCAGTTTTTCTTGGCCGGCTTCCCGTTCTGC
TGGATAAGCATGGGTTCGTGTAGAATGGTCTTCAACCTGGGCTCGGGCAC
CGGCTTGTTCTTTGACCGTTCATATGTCTCTGGCTTCTGGATACTAGTTA
CCGGTTCGTTCGTCACTTCTTCTCTTAGAAGCGACTTTATGATGATCACC
CGGAACTCCGAGTAACTTTTAAGATGTCCGACTCGCGCATTCTGGCCATT
AGCAAAGTATAGCAAATAGGCATTGTACACGAGGATGTTGAGTAGGAAAA
TGGTCAACTTTATGTTTGCCTTCAGCTCCTTGCAGGCAGCTTGGTAGTGG
ATCAGGTGGTGGCGACCGTCGTTTCCAGGTCGTAGTTGAAACTCGAGCTC
CTGGATCAACTTAGGTTTTGCATTTGTCTTTTGCATGGCCATCTCCTTGG
AATAAATGGCCAAGCAGTCAGAGCTGAAGCAGTACAAGCTCTTTGCCCGT
CGTCGCCATTTGGCCATCATCAGAGAAGTGGCATAGCTGGTGGAGATGCT
GTTGGAATCCAACCGCTGGTGCACCAGTGCCTTACTGTTGCCATATCTAT
TCCTGTCCAGCAGACCAGTGCAATAGGTGCTTTTCTTGGCCAACTCCTGA
GCCAGGCCGTAGCTTCCATAGAACTTTGAGGTGTACACAGTGCGTCCTCC
ATGGTACCCCTCCATTAGTTTCAGGACAATCTTGT
BS08672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-PA | 1869 | CG9839-RA | 1001..1869 | 885..17 | 4320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 1224..2094 | 885..15 | 4340 | 99.9 | Minus |
| CG9839-RA | 2064 | CG9839-RA | 1102..1972 | 885..15 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8803563..8804433 | 15..885 | 4340 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:01:12 has no hits.
BS08672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:06 Download gff for
BS08672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 1001..1869 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:53 Download gff for
BS08672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 1001..1869 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:59 Download gff for
BS08672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 1102..1972 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:05 Download gff for
BS08672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 1102..1972 | 15..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:05 Download gff for
BS08672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8803563..8804433 | 15..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:59 Download gff for
BS08672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4629285..4630155 | 15..885 | 99 | | Plus |
BS08672.5prime Sequence
882 bp (810 high quality bases) assembled on 2006-01-11
> BS08672.5prime
GAAGTTATCAGTCGACATGTCCAGCTCCGGAAGAAAGCGCAAGCAGCAAC
TTAAGCCGCGTCAGGACGATCACCGGTCGCCGGTGAAGCGACGCAGTGTG
GACATCAAGTCGGAACCCTTGGACGGCTATCCGGCGCTAGCAGACTACGA
TTTAAGTACGGCCGATATCAAGCCGGATCTCACTGAACTCCAATTGCAGC
TGGTGGCGGAGCAGCAGGCGGCCAGCAACACCATTCGCTTGGAATTGGAA
CAGCAAGAGAGTGATTCCGACGAGGATGGCTACTCAGAGCTCGATTACCA
AGCTGAAGATGTCTTCTGTCAGGACGATATGGATGACTACGATCCAGATT
GGTCCAGCCAGCAGACGGGTTCCCGACTGCTCTTCAAATTTCCCATCCAG
CAGAGTGGCCTGAAATTCGGACAACGCTTCCAGGGACCACAGCACTACTT
CAACCAAGTGCTGGGAAATCGCTCCAAGTTCTTCAGTTCCCTGGCCCAAA
GCTGCAACCTAAAGGGAGGAGAGCTCAAGTCCAATCCCACAACTGCCGAA
GAAATGGAAATCTTTATGGCGCTTTCCCTGCTTATGTGTGACCTGAAGCT
GGAGCACCTATCGGATTACTGGAGCACTAACATGTTTTACGGTCTCGTCG
GATTCTCTGGGAAGATTCCTCTGGAACGGTATCAGCAGCTGCTGCACTGC
CTTAACTTTGATGCACCGCAGCTACAAGCGGGCAGAGCCAAAGTGAAGAA
CTCTCTACTGCTAGACTTTATCAACGAGCGTATGGAAGAGATATACATTT
GTGGCCAGCAACTGGTGCTCAATGAACCTATCACTCTGTGGAAGGGTGCA
TTAAGATACCAGGATGAACTTCCAAACAATTC
BS08672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-PA | 1869 | CG9839-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 220..1086 | 13..879 | 4320 | 99.9 | Plus |
| CG9839-RA | 2064 | CG9839-RA | 98..964 | 13..879 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8804571..8805127 | 879..323 | 2785 | 100 | Minus |
| 3R | 32079331 | 3R | 8805192..8805502 | 323..13 | 1540 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:34:09 has no hits.
BS08672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:07 Download gff for
BS08672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:48:55 Download gff for
BS08672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:02 Download gff for
BS08672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..968 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:59 Download gff for
BS08672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..968 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:59 Download gff for
BS08672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8804567..8805126 | 324..882 | 99 | <- | Minus |
| 3R | 8805192..8805506 | 9..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:02 Download gff for
BS08672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4630289..4630848 | 324..882 | 99 | <- | Minus |
| arm_3R | 4630914..4631228 | 9..323 | 99 | | Minus |
BS08672.complete Sequence
1901 bp assembled on 2008-01-16
GenBank Submission: FJ636231
> BS08672.complete
GAAGTTATCAGTCGACATGTCCAGCTCCGGAAGAAAGCGCAAGCAGCAAC
TTAAGCCGCGTCAGGACGATCACCGGTCGCCGGTGAAGCGACGCAGTGTG
GACATCAAGTCGGAACCCTTGGACGGCTATCCGGCGCTAGCAGACTACGA
TTTAAGTACGGCCGATATCAAGCCGGATCTCACTGAACTCCAATTGCAGC
TGGTGGCGGAGCAGCAGGCGGCCAGCAACACCATTCGCTTGGAATTGGAA
CAGCAAGAGAGTGATTCCGACGAGGATGGCTACTCAGAGCTCGATTACCA
AGCTGAAGATGTCTTCTGTCAGGACGATATGGATGACTACGATCCAGATT
GGTCCAGCCAGCAGACGGGTTCCCGACTGCTCTTCAAATTTCCCATCCAG
CAGAGTGGCCTGAAATTCGGACAACGCTTCCAGGGACCACAGCACTACTT
CAACCAAGTGCTGGGAAATCGCTCCAAGTTCTTCAGTTCCCTGGCCCAAA
GCTGCAACCTAAAGGGAGGAGAGCTCAAGTCCAATCCCACAACTGCCGAA
GAAATGGAAATCTTTATGGCGCTTTCCCTGCTTATGTGTGACCTGAAGCT
GGAGCACCTATCGGATTACTGGAGCACTAACATGTTTTACGGTCTCGTCG
GATTCTCTGGGAAGATTCCTCTGGAACGGTATCAGCAGCTGCTGCACTGC
CTTAACTTTGATGCACCGCAGCTACAAGCGGGCAGAGCCAAAGTGAAGAA
CTCTCTACTGCTAGACTTTATCAACGAGCGTATGGAAGAGATATACATTT
GTGGCCAGCAACTGGTGCTCAATGAACCTATCACTCTGTGGAAGGGTGCA
TTAAGATACCAGGATGAACTTCCAAACAAATTCCGCACCAACGCACTACT
GCTGCATATGCTAACTGAGCAGAGCGGTTTGGTGGTGAAGATTCTACCGG
AGATTGTGCGGAAGGAAGACGCACCGGCATGGGTACGCAATTCCCGGCAG
TTGGTGGAGCACCGAAACAAGATTGTCCTGAAACTAATGGAGGGTTACCA
TGGAGGACGCACTGTGTACACCTCAAAGTTCTATGGAAGCTACGGCCTGG
CTCAGGAGTTGGCCAAGAAAAGCACCTATTGCACTGGTCTGCTGGACAGG
AATAGATATGGCAACAGTAAGGCACTGGTGCACCAGCGGTTGGATTCCAA
CAGCATCTCCACCAGCTATGCCACTTCTCTGATGATGGCCAAATGGCGAC
GACGGGCAAAGAGCTTGTACTGCTTCAGCTCTGACTGCTTGGCCATTTAT
TCCAAGGAGATGGCCATGCAAAAGACAAATGCAAAACCTAAGTTGATCCA
GGAGCTCGAGTTTCAACTACGACCTGGAAACGACGGTCGCCACCACCTGA
TCCACTACCAAGCTGCCTGCAAGGAGCTGAAGGCAAACATAAAGTTGACC
ATTTTCCTACTCAACATCCTCGTGTACAATGCCTATTTGCTATACTTTGC
TAATGGCCAGAATGCGCGAGTCGGACATCTTAAAAGTTACTCGGAGTTCC
GGGTGATCATCATAAAGTCGCTTCTAAGAGAAGAAGTGACGAACGAACCG
GTAACTAGTATCCAGAAGCCAGAGACATATGAACGGTCAAAGAACAAGCC
GGTGCCCGAGCCCAGGTTGAAGACCATTCTACACGAACCCATGCTTATCC
AGCAGAACGGGAAGCCGGCCAAGAAAAACTGCCGCTATTGCCACAAAGGC
GGAATGCTGCAGTTCAGCAGGTACATGTGCAACACCTGTCCCGATAAGCC
GGGTCTATGCCAGGAACCCTGCTTCCTTCTCTGGCATGAGCAGCTCAAAA
AAGTAATCAGACAGACAATTGGACGAAGTGAATAAAAGCTTTCTAGACCA
T
BS08672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 1869 | CG9839-PB | 1..1869 | 17..1885 | 9345 | 100 | Plus |
| CG9839-RA | 1869 | CG9839-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 220..2094 | 13..1887 | 9360 | 99.9 | Plus |
| CG9839-RA | 2064 | CG9839-RA | 98..1972 | 13..1887 | 9360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8803563..8805127 | 1887..323 | 7825 | 100 | Minus |
| 3R | 32079331 | 3R | 8805192..8805502 | 323..13 | 1540 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:48 has no hits.
BS08672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:40 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 1..1869 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:15 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 133..1999 | 17..1883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:44 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 102..1968 | 17..1883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:40 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 125..2003 | 9..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:16 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 102..1968 | 17..1883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:16 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8803567..8805126 | 324..1883 | 100 | <- | Minus |
| 3R | 8805192..8805498 | 17..323 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:44 Download gff for
BS08672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4629289..4630848 | 324..1883 | 100 | <- | Minus |
| arm_3R | 4630914..4631220 | 17..323 | 100 | | Minus |
BS08672.pep Sequence
Translation from 16 to 1884
> BS08672.pep
MSSSGRKRKQQLKPRQDDHRSPVKRRSVDIKSEPLDGYPALADYDLSTAD
IKPDLTELQLQLVAEQQAASNTIRLELEQQESDSDEDGYSELDYQAEDVF
CQDDMDDYDPDWSSQQTGSRLLFKFPIQQSGLKFGQRFQGPQHYFNQVLG
NRSKFFSSLAQSCNLKGGELKSNPTTAEEMEIFMALSLLMCDLKLEHLSD
YWSTNMFYGLVGFSGKIPLERYQQLLHCLNFDAPQLQAGRAKVKNSLLLD
FINERMEEIYICGQQLVLNEPITLWKGALRYQDELPNKFRTNALLLHMLT
EQSGLVVKILPEIVRKEDAPAWVRNSRQLVEHRNKIVLKLMEGYHGGRTV
YTSKFYGSYGLAQELAKKSTYCTGLLDRNRYGNSKALVHQRLDSNSISTS
YATSLMMAKWRRRAKSLYCFSSDCLAIYSKEMAMQKTNAKPKLIQELEFQ
LRPGNDGRHHLIHYQAACKELKANIKLTIFLLNILVYNAYLLYFANGQNA
RVGHLKSYSEFRVIIIKSLLREEVTNEPVTSIQKPETYERSKNKPVPEPR
LKTILHEPMLIQQNGKPAKKNCRYCHKGGMLQFSRYMCNTCPDKPGLCQE
PCFLLWHEQLKKVIRQTIGRSE*
BS08672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-PB | 622 | CG9839-PB | 1..622 | 1..622 | 3266 | 100 | Plus |
| CG9839-PA | 622 | CG9839-PA | 1..622 | 1..622 | 3266 | 100 | Plus |
