Clone Sequence Records
BS08677.3prime Sequence
690 bp (689 high quality bases) assembled on 2006-01-11
> BS08677.3prime
ATGGTCTAGAAAGCTTTCAAGAGGCAAAATCGAGGCTCACAGTTTGGCAG
GAGTCGCCCACTGTTCCACTGGAGCCGGCTGAGGTAGCATTCCGCTTGAG
CGTTGGCCCCTCATCGTAGCGAATCGTCATGGAGTTGGAGTTTCCGGGAA
TGGCCACATAGCCCAGCGACTCATAGAACTTGATCAGCTTGTCCTTGCAG
TCCAGCGACATTTTGTAGCAGCCCAGTTCCTCGGCCAGCAGCGATACGGT
GACCACGATCAGTTTTCCCAGTTGCTTCCCGCGATACGTGTCATTGACCA
CCACATCCTCTAGACGGCCACGCACAGCACAGTTATGGATGAACTTGCGC
TCGATCACCAAGGATGCAGCTCCAATAATCTCATTCTTGCGAGTGTCCTC
AATGACGGTGACAAAGTAGTCCCCACTGGCTTTCATCTGCGAAAAGCGGG
TCAAGAACTGCGTACGATTCACATTGCCGACATGGGTGAGTTGCGAGAGC
AGCTGCAGGAATCCACGATCGTAGTCGGTGTCCTTGAGAGGACGCACTTT
CATCCAGGGCTCGCCGGGATTGGCCGCCGATATGAAGGGCTTAAAGTTGG
CGGGACTGCGATGAAAGTCCAGCTTTAGCAGCAGATTAGGATCGTACAGA
TATGTCTCCTCCGTAAGTTGCACCATGTCGACTGATAACT
BS08677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-PA | 660 | CG1969-RA | 1..660 | 676..17 | 3300 | 100 | Minus |
CG1969-PB | 648 | CG1969-RB | 3..648 | 662..17 | 3230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 1273 | CG1969-RA | 55..714 | 676..17 | 3300 | 100 | Minus |
CG1969-RF | 1341 | CG1969-RF | 137..782 | 662..17 | 3230 | 100 | Minus |
CG1969-RH | 1261 | CG1969-RH | 57..702 | 662..17 | 3230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29741150..29741393 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 29740567..29740778 | 662..451 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 29740840..29740967 | 450..323 | 640 | 100 | Minus |
3R | 32079331 | 3R | 29741028..29741091 | 323..260 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:13:51 has no hits.
BS08677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:15 Download gff for
BS08677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:04 Download gff for
BS08677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:53:46 Download gff for
BS08677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 11..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:43 Download gff for
BS08677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 11..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:43 Download gff for
BS08677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29740568..29740778 | 451..661 | 100 | -> | Minus |
3R | 29740840..29740967 | 323..450 | 100 | -> | Minus |
3R | 29741029..29741090 | 261..322 | 100 | -> | Minus |
3R | 29741150..29741398 | 11..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:53:46 Download gff for
BS08677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25566290..25566500 | 451..661 | 100 | -> | Minus |
arm_3R | 25566562..25566689 | 323..450 | 100 | -> | Minus |
arm_3R | 25566751..25566812 | 261..322 | 100 | -> | Minus |
arm_3R | 25566872..25567120 | 11..260 | 98 | | Minus |
BS08677.5prime Sequence
690 bp (689 high quality bases) assembled on 2006-01-11
> BS08677.5prime
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTTGAAAGCTTTCTAGACC
BS08677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-PA | 660 | CG1969-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
CG1969-PB | 648 | CG1969-RB | 3..648 | 31..676 | 3230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 1273 | CG1969-RA | 55..714 | 17..676 | 3300 | 100 | Plus |
CG1969-RF | 1341 | CG1969-RF | 137..782 | 31..676 | 3230 | 100 | Plus |
CG1969-RH | 1261 | CG1969-RH | 57..702 | 31..676 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29741150..29741393 | 433..676 | 1220 | 100 | Plus |
3R | 32079331 | 3R | 29740567..29740778 | 31..242 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 29740840..29740967 | 243..370 | 640 | 100 | Plus |
3R | 32079331 | 3R | 29741028..29741091 | 370..433 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:38:35 has no hits.
BS08677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:16 Download gff for
BS08677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:05 Download gff for
BS08677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:42 Download gff for
BS08677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:23 Download gff for
BS08677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 17..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:23 Download gff for
BS08677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29740568..29740778 | 32..242 | 100 | -> | Plus |
3R | 29740840..29740967 | 243..370 | 100 | -> | Plus |
3R | 29741029..29741090 | 371..432 | 100 | -> | Plus |
3R | 29741150..29741398 | 433..682 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:42 Download gff for
BS08677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25566562..25566689 | 243..370 | 100 | -> | Plus |
arm_3R | 25566751..25566812 | 371..432 | 100 | -> | Plus |
arm_3R | 25566290..25566500 | 32..242 | 100 | -> | Plus |
arm_3R | 25566872..25567120 | 433..682 | 98 | | Plus |
BS08677.complete Sequence
692 bp (692 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636232
> BS08677.complete
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTTGAAAGCTTTCTAGACCAT
BS08677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 660 | CG1969-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
CG1969-RF | 687 | CG1969-PF | 3..648 | 31..676 | 3230 | 100 | Plus |
CG1969-RH | 648 | CG1969-PH | 3..648 | 31..676 | 3230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 1273 | CG1969-RA | 55..714 | 17..676 | 3300 | 100 | Plus |
CG1969-RF | 1341 | CG1969-RF | 137..782 | 31..676 | 3230 | 100 | Plus |
CG1969-RH | 1261 | CG1969-RH | 57..702 | 31..676 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29741150..29741393 | 433..676 | 1220 | 100 | Plus |
3R | 32079331 | 3R | 29740567..29740778 | 31..242 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 29740840..29740967 | 243..370 | 640 | 100 | Plus |
3R | 32079331 | 3R | 29741028..29741091 | 370..433 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:11 has no hits.
BS08677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:52 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:07 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 36..700 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:34 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..713 | 17..675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:53 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 36..700 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:03 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..713 | 17..675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:03 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29740568..29740778 | 32..242 | 100 | -> | Plus |
3R | 29740840..29740967 | 243..370 | 100 | -> | Plus |
3R | 29741029..29741090 | 371..432 | 100 | -> | Plus |
3R | 29741150..29741392 | 433..675 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:34 Download gff for
BS08677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25566290..25566500 | 32..242 | 100 | -> | Plus |
arm_3R | 25566562..25566689 | 243..370 | 100 | -> | Plus |
arm_3R | 25566751..25566812 | 371..432 | 100 | -> | Plus |
arm_3R | 25566872..25567114 | 433..675 | 100 | | Plus |
BS08677.pep Sequence
Translation from 16 to 675
> BS08677.pep
MVQLTEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDT
DYDRGFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEI
IGAASLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEE
LGCYKMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSA
GSSGTVGDSCQTVSLDFAS*
BS08677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-PA | 219 | CG1969-PA | 1..219 | 1..219 | 1130 | 100 | Plus |
CG1969-PH | 215 | CG1969-PH | 2..215 | 6..219 | 1107 | 100 | Plus |
CG1969-PG | 215 | CG1969-PG | 2..215 | 6..219 | 1107 | 100 | Plus |
CG1969-PB | 215 | CG1969-PB | 2..215 | 6..219 | 1107 | 100 | Plus |
CG1969-PF | 228 | CG1969-PF | 2..215 | 6..219 | 1107 | 100 | Plus |