Clone BS08677 Report

Search the DGRC for BS08677

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG1969-RA
Protein status:BS08677.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08677.3prime Sequence

690 bp (689 high quality bases) assembled on 2006-01-11

> BS08677.3prime
ATGGTCTAGAAAGCTTTCAAGAGGCAAAATCGAGGCTCACAGTTTGGCAG
GAGTCGCCCACTGTTCCACTGGAGCCGGCTGAGGTAGCATTCCGCTTGAG
CGTTGGCCCCTCATCGTAGCGAATCGTCATGGAGTTGGAGTTTCCGGGAA
TGGCCACATAGCCCAGCGACTCATAGAACTTGATCAGCTTGTCCTTGCAG
TCCAGCGACATTTTGTAGCAGCCCAGTTCCTCGGCCAGCAGCGATACGGT
GACCACGATCAGTTTTCCCAGTTGCTTCCCGCGATACGTGTCATTGACCA
CCACATCCTCTAGACGGCCACGCACAGCACAGTTATGGATGAACTTGCGC
TCGATCACCAAGGATGCAGCTCCAATAATCTCATTCTTGCGAGTGTCCTC
AATGACGGTGACAAAGTAGTCCCCACTGGCTTTCATCTGCGAAAAGCGGG
TCAAGAACTGCGTACGATTCACATTGCCGACATGGGTGAGTTGCGAGAGC
AGCTGCAGGAATCCACGATCGTAGTCGGTGTCCTTGAGAGGACGCACTTT
CATCCAGGGCTCGCCGGGATTGGCCGCCGATATGAAGGGCTTAAAGTTGG
CGGGACTGCGATGAAAGTCCAGCTTTAGCAGCAGATTAGGATCGTACAGA
TATGTCTCCTCCGTAAGTTGCACCATGTCGACTGATAACT

BS08677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PA 660 CG1969-RA 1..660 676..17 3300 100 Minus
CG1969-PB 648 CG1969-RB 3..648 662..17 3230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..714 676..17 3300 100 Minus
CG1969-RF 1341 CG1969-RF 137..782 662..17 3230 100 Minus
CG1969-RH 1261 CG1969-RH 57..702 662..17 3230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741393 260..17 1220 100 Minus
3R 32079331 3R 29740567..29740778 662..451 1060 100 Minus
3R 32079331 3R 29740840..29740967 450..323 640 100 Minus
3R 32079331 3R 29741028..29741091 323..260 320 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:13:51 has no hits.

BS08677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:15 Download gff for BS08677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 17..676 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:04 Download gff for BS08677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 17..676 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:53:46 Download gff for BS08677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 11..676 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:43 Download gff for BS08677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 11..676 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:43 Download gff for BS08677.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29740568..29740778 451..661 100 -> Minus
3R 29740840..29740967 323..450 100 -> Minus
3R 29741029..29741090 261..322 100 -> Minus
3R 29741150..29741398 11..260 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:53:46 Download gff for BS08677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566290..25566500 451..661 100 -> Minus
arm_3R 25566562..25566689 323..450 100 -> Minus
arm_3R 25566751..25566812 261..322 100 -> Minus
arm_3R 25566872..25567120 11..260 98   Minus

BS08677.5prime Sequence

690 bp (689 high quality bases) assembled on 2006-01-11

> BS08677.5prime
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTTGAAAGCTTTCTAGACC

BS08677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PA 660 CG1969-RA 1..660 17..676 3300 100 Plus
CG1969-PB 648 CG1969-RB 3..648 31..676 3230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..714 17..676 3300 100 Plus
CG1969-RF 1341 CG1969-RF 137..782 31..676 3230 100 Plus
CG1969-RH 1261 CG1969-RH 57..702 31..676 3230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741393 433..676 1220 100 Plus
3R 32079331 3R 29740567..29740778 31..242 1060 100 Plus
3R 32079331 3R 29740840..29740967 243..370 640 100 Plus
3R 32079331 3R 29741028..29741091 370..433 320 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:38:35 has no hits.

BS08677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:16 Download gff for BS08677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:05 Download gff for BS08677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:42 Download gff for BS08677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 17..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:23 Download gff for BS08677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 17..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:23 Download gff for BS08677.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29740568..29740778 32..242 100 -> Plus
3R 29740840..29740967 243..370 100 -> Plus
3R 29741029..29741090 371..432 100 -> Plus
3R 29741150..29741398 433..682 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:42 Download gff for BS08677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566562..25566689 243..370 100 -> Plus
arm_3R 25566751..25566812 371..432 100 -> Plus
arm_3R 25566290..25566500 32..242 100 -> Plus
arm_3R 25566872..25567120 433..682 98   Plus

BS08677.complete Sequence

692 bp (692 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636232

> BS08677.complete
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTTGAAAGCTTTCTAGACCAT

BS08677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 660 CG1969-PA 1..660 17..676 3300 100 Plus
CG1969-RF 687 CG1969-PF 3..648 31..676 3230 100 Plus
CG1969-RH 648 CG1969-PH 3..648 31..676 3230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..714 17..676 3300 100 Plus
CG1969-RF 1341 CG1969-RF 137..782 31..676 3230 100 Plus
CG1969-RH 1261 CG1969-RH 57..702 31..676 3230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741393 433..676 1220 100 Plus
3R 32079331 3R 29740567..29740778 31..242 1060 100 Plus
3R 32079331 3R 29740840..29740967 243..370 640 100 Plus
3R 32079331 3R 29741028..29741091 370..433 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:33:11 has no hits.

BS08677.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:52 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:07 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 36..700 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:34 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..713 17..675 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:53 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 36..700 17..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:03 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..713 17..675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:03 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29740568..29740778 32..242 100 -> Plus
3R 29740840..29740967 243..370 100 -> Plus
3R 29741029..29741090 371..432 100 -> Plus
3R 29741150..29741392 433..675 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:34 Download gff for BS08677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566290..25566500 32..242 100 -> Plus
arm_3R 25566562..25566689 243..370 100 -> Plus
arm_3R 25566751..25566812 371..432 100 -> Plus
arm_3R 25566872..25567114 433..675 100   Plus

BS08677.pep Sequence

Translation from 16 to 675

> BS08677.pep
MVQLTEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDT
DYDRGFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEI
IGAASLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEE
LGCYKMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSA
GSSGTVGDSCQTVSLDFAS*

BS08677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PA 219 CG1969-PA 1..219 1..219 1130 100 Plus
CG1969-PH 215 CG1969-PH 2..215 6..219 1107 100 Plus
CG1969-PG 215 CG1969-PG 2..215 6..219 1107 100 Plus
CG1969-PB 215 CG1969-PB 2..215 6..219 1107 100 Plus
CG1969-PF 228 CG1969-PF 2..215 6..219 1107 100 Plus