Clone Sequence Records
BS08678.3prime Sequence
937 bp (835 high quality bases) assembled on 2006-01-11
> BS08678.3prime
ATGGTCTAGAAAGCTTCTAAAGGGACACTGAGGGGAATGGATTTTGCTTC
GACACGACCAGTTTGTTGTGAGCATGTGAGATGTACCCCTTAATCTTTCC
ATCGTAAATGAGATTGGCCACGATGCAGTGCGTCTCGTCCAGAGAAACAT
CGGTTAAGCCAACGAAATGCAAGGCGGAGAGGAAGTCACCCATGTCCAAC
TGATGCGATTTCCGGATGACGAACACCTTCTTGAACAGGTTGCGATACAC
GAGGAACTTGAGCTTCTCCACCAGCAGATAGATACCACTCCTGATCAGCA
CCAGCTCCTGGTCCCTGACAATCTCATCAAAGCGATTCACATTGCCAGCC
TTCATGGCCATAGCCAGATCGAGAAACAGCAGGAGATCGTAGCGCTGCAG
TAAGGATTTGCTGGGCAGATATCCCAGCAGCATCTTCACTGGCACCAAAT
AGATGAGGATGAGCCTCTTGTTGCTGGCAAACCGATCCGGGCAGTTGCTA
AAGGCATACGACAGATACTGTACGGCTGCCTGGTAGTTGGAGTCGAACAT
AGCCCGTCTACCTACAAAATACTTGTAGGTAATTTGCTCCGGCAGCGGAA
AAGAATCCTTGAAGATGCAATTATCGATGGCACGGATAAGGGGCTTGCAC
AGATGCAACTTGTTGATTCGAAAATAAATCTTGAATAGCTGGTTTACGAG
GTTCATCATGCCCAGACGCTTGGTGTCCTCCTCTGAAGCTCGTCCATCAG
CGGCACAAACGCGGAAACAGGCCATTATGCAGTCGGCAGCCTTCTCCAAT
ACGTGGCCAGGTGTGAATCCTTGACAATGCTTCTCGCAGGCCTGCGCCAA
GTACCTTAGATCCAGGCACACGCGGTACATTAGTGGCAGGCACCAATTCT
CGTCCTTCAGCTGCTGCAAAAGCCTCACAACGGCTCC
BS08678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7351-PA | 1188 | CG7351-RA | 268..1188 | 937..17 | 4605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1275 | CG7351-RA | 307..1227 | 937..17 | 4605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11626747..11627667 | 937..17 | 4605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:22:32 has no hits.
BS08678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:17 Download gff for
BS08678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 268..1188 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:07 Download gff for
BS08678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 268..1188 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:07 Download gff for
BS08678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 307..1233 | 10..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:35 Download gff for
BS08678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 307..1233 | 10..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:35 Download gff for
BS08678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11626747..11627673 | 10..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:07 Download gff for
BS08678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11619847..11620773 | 10..937 | 99 | | Minus |
BS08678.5prime Sequence
916 bp (868 high quality bases) assembled on 2006-01-11
> BS08678.5prime
GAAGTTATCAGTCGACATGTTCGGCACCGTAAATAACTATTTATCCGGCG
TTTTGCACGCCGCCCAGGATTTAGATGGCGAGTCCTTGGCCACGTATCTC
TCCTTACGAGACGTGCACGTTCAGAACCACAATTTGTACATTGCCCAGCC
GGAAAAGTTGGTGGATCGATTCCTGAAACCGCCACTGGACGAAGTTGTGT
CCGCCCACCTGAAGGTGCTGTATCACCTGGCACAGGAGCCTCCTGGTTAC
ATGGAAGCCTACACCCAACAGTCGGCAGCCTGCGGAGCCGTTGTGAGGCT
TTTGCAGCAGCTGAAGGACGAGAATTGGTGCCTGCCACTAATGTACCGCG
TGTGCCTGGATCTAAGGTACTTGGCGCAGGCCTGCGAGAAGCATTGTCAA
GGATTCACACCTGGCCACGTATTGGAGAAGGCTGCCGACTGCATAATGGC
CTGTTTCCGCGTTTGTGCCGCTGATGGACGAGCTTCAGAGGAGGACACCA
AGCGTCTGGGCATGATGAACCTCGTAAACCAGCTATTCAAGATTTATTTT
CGAATCAACAAGTTGCATCTGTGCAAGCCCCTTATCCGTGCCATCGATAA
TTGCATCTTCAAGGATTCTTTTCCGCTGCCGGAGCAAATTACCTACAAGT
ATTTTGTAGGTAGACGGGCTATGTTCGACTCCAACTACCAGGCAGCCGTA
CAGTATCTGTCGTATGCCTTTAGCAACTGCCCGGATCGGTTTGCCAGCAA
CAAGAGGCTCATCCTCATCTATTTGGTGCCAGTGAAGATGCTGCTGGGAT
ATCTGCCCCAGCAAATCCTTACTGCAGCGCTACGATCTCCTGCTGTTTCT
CGATCTGGCTATGGCCATGAAGGCTGGCAATGTGAATCGCTTTGATGAGA
TTGTCAGGGACCAGGA
BS08678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7351-PA | 1188 | CG7351-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
| CG7351-PA | 1188 | CG7351-RA | 790..899 | 807..916 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1275 | CG7351-RA | 40..938 | 17..916 | 4475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11626480..11627378 | 17..916 | 4450 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:50:03 has no hits.
BS08678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:18 Download gff for
BS08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:08 Download gff for
BS08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:58 Download gff for
BS08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 34..937 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:11 Download gff for
BS08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 34..937 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:11 Download gff for
BS08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11626479..11627377 | 16..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:58 Download gff for
BS08678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11619579..11620477 | 16..915 | 99 | | Plus |
BS08678.complete Sequence
1220 bp (1220 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636233
> BS08678.complete
GAAGTTATCAGTCGACATGTTCGGCACCGTAAATAACTATTTATCCGGCG
TTTTGCACGCCGCCCAGGATTTAGATGGCGAGTCCTTGGCCACGTATCTC
TCCTTACGAGACGTGCACGTTCAGAACCACAATTTGTACATTGCCCAGCC
GGAAAAGTTGGTGGATCGATTCCTGAAACCGCCACTGGACGAAGTTGTGT
CCGCCCACCTGAAGGTGCTGTATCACCTGGCACAGGAGCCTCCTGGTTAC
ATGGAAGCCTACACCCAACAGTCGGCAGCCTGCGGAGCCGTTGTGAGGCT
TTTGCAGCAGCTGAAGGACGAGAATTGGTGCCTGCCACTAATGTACCGCG
TGTGCCTGGATCTAAGGTACTTGGCGCAGGCCTGCGAGAAGCATTGTCAA
GGATTCACACCTGGCCACGTATTGGAGAAGGCTGCCGACTGCATAATGGC
CTGTTTCCGCGTTTGTGCCGCTGATGGACGAGCTTCAGAGGAGGACACCA
AGCGTCTGGGCATGATGAACCTCGTAAACCAGCTATTCAAGATTTATTTT
CGAATCAACAAGTTGCATCTGTGCAAGCCCCTTATCCGTGCCATCGATAA
TTGCATCTTCAAGGATTCTTTTCCGCTGCCGGAGCAAATTACCTACAAGT
ATTTTGTAGGTAGACGGGCTATGTTCGACTCCAACTACCAGGCAGCCGTA
CAGTATCTGTCGTATGCCTTTAGCAACTGCCCGGATCGGTTTGCCAGCAA
CAAGAGGCTCATCCTCATCTATTTGGTGCCAGTGAAGATGCTGCTGGGAT
ATCTGCCCAGCAAATCCTTACTGCAGCGCTACGATCTCCTGCTGTTTCTC
GATCTGGCTATGGCCATGAAGGCTGGCAATGTGAATCGCTTTGATGAGAT
TGTCAGGGACCAGGAGCTGGTGCTGATCAGGAGTGGTATCTATCTGCTGG
TGGAGAAGCTCAAGTTCCTCGTGTATCGCAACCTGTTCAAGAAGGTGTTC
GTCATCCGGAAATCGCATCAGTTGGACATGGGTGACTTCCTCTCCGCCTT
GCATTTCGTTGGCTTAACCGATGTTTCTCTGGACGAGACGCACTGCATCG
TGGCCAATCTCATTTACGATGGAAAGATTAAGGGGTACATCTCACATGCT
CACAACAAACTGGTCGTGTCGAAGCAAAATCCATTCCCCTCAGTGTCCCT
TTAGAAGCTTTCTAGACCAT
BS08678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1188 | CG7351-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1275 | CG7351-RA | 40..1227 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11626480..11627667 | 17..1204 | 5940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:56:05 has no hits.
BS08678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:56 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-RA | 1..1188 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:31 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-RA | 35..1234 | 9..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:19 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 45..1227 | 22..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:56 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-RA | 35..1234 | 9..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:35 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 45..1227 | 22..1204 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:35 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11626485..11627667 | 22..1204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:19 Download gff for
BS08678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11619585..11620767 | 22..1204 | 100 | | Plus |
BS08678.pep Sequence
Translation from 16 to 1203
> BS08678.pep
MFGTVNNYLSGVLHAAQDLDGESLATYLSLRDVHVQNHNLYIAQPEKLVD
RFLKPPLDEVVSAHLKVLYHLAQEPPGYMEAYTQQSAACGAVVRLLQQLK
DENWCLPLMYRVCLDLRYLAQACEKHCQGFTPGHVLEKAADCIMACFRVC
AADGRASEEDTKRLGMMNLVNQLFKIYFRINKLHLCKPLIRAIDNCIFKD
SFPLPEQITYKYFVGRRAMFDSNYQAAVQYLSYAFSNCPDRFASNKRLIL
IYLVPVKMLLGYLPSKSLLQRYDLLLFLDLAMAMKAGNVNRFDEIVRDQE
LVLIRSGIYLLVEKLKFLVYRNLFKKVFVIRKSHQLDMGDFLSALHFVGL
TDVSLDETHCIVANLIYDGKIKGYISHAHNKLVVSKQNPFPSVSL*
BS08678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-PA | 395 | CG7351-PA | 1..395 | 1..395 | 2060 | 100 | Plus |
