Clone Sequence Records
BS08684.3prime Sequence
911 bp (794 high quality bases) assembled on 2006-01-11
> BS08684.3prime
ATGGTCTAGAAAGCTTTTACTTCTGCAGATGGGTCTTCACCAGGGAAACA
AGAGGGGCAGCTGTGGGCATCGCTGGGTGCTCACCGGCACTGCCGGCGAT
ATCAATATGGGTGTACTTAATGGGCAGCATTGAATCCAACCCGTGTTTGT
CCAGTCCAGAAGCCTTAATCATAAAGGCGGCGGGCACCTGGTGACCGCGA
GGAGTCCTCACCGACGGGGCATTATTGGCCTGCACCAAATCCTCGCCAAT
CACCTTTCCAGCGTTAAAAGAGAAGTCACTGGGACGGAGAATGGACACTT
CGAAGGGCTCTCCGAAGGCCTGTCCAGCAGCCTGCAGTCTTCTGGCGTGA
TCCTCCCGATGGGCCACGCTGTTATCGATGGCAATCGACTGACCCTCACC
TGCCGAGATGAAGGCGTGACCAGTCAAGGTGGCAATGGTGAAAAGATGCG
GATCCGGGAGATTCTGCTCCACGACCAACTCCTTCATGCGGCACAGGGCA
TCGGTCATGCACATGCGACCCTCGGCATCAGTATTTCCAATCCTCACATG
AAGACCAGCTCGCGAGGTGATAACCTCATCGGCCACGTAGCACTCCTCGC
CCACGGAATTGCGCACCATGCACAGGGCAGCCACAACATGGATATCATCC
GGTTGCAGTTGACTGACCACCTGCATGAATCCAGCGACAGCAGCCGCTCC
ACACTTGTCGCGCGACATACCGGCCATCACACCACCGGCCTTGATGTCAG
CACCACCGGTGTCATAGGTAACACCCTTGCCGACCAGCATCAGAGTTTTT
CTCGCCGGCTTTGGAGGCTTGTACTCCAGGAAAATGATGCGACCACAATG
ACGCTCCACTGCATCAGCAGCCGGGTTTACGGCGGCAAACAGGGGATACT
CTTTCTGCAAC
BS08684.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9285-PA | 1527 | Dip-B-RA | 633..1527 | 911..17 | 4400 | 99.6 | Minus |
CG9285-PC | 1527 | Dip-B-RC | 633..1527 | 911..17 | 4400 | 99.6 | Minus |
CG9285-PB | 1527 | Dip-B-RB | 633..1527 | 911..17 | 4400 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1813 | CG9285-RD | 696..1591 | 911..16 | 4435 | 99.7 | Minus |
Dip-B-RB | 1938 | CG9285-RB | 821..1716 | 911..16 | 4435 | 99.7 | Minus |
Dip-B-RC | 2047 | CG9285-RC | 930..1825 | 911..16 | 4435 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13784559..13785454 | 911..16 | 4435 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:24:26 has no hits.
BS08684.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:27 Download gff for
BS08684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-PA | 633..1527 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:21 Download gff for
BS08684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9285-PB | 633..1527 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:27 Download gff for
BS08684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RA | 915..1810 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:02 Download gff for
BS08684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RC | 930..1825 | 16..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:02 Download gff for
BS08684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13784559..13785454 | 16..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:27 Download gff for
BS08684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9610281..9611176 | 16..911 | 99 | | Minus |
BS08684.5prime Sequence
919 bp (781 high quality bases) assembled on 2006-01-11
> BS08684.5prime
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCA
ACTGCAACCGGATGATATC
BS08684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9285-PA | 1527 | Dip-B-RA | 1..903 | 17..919 | 4515 | 100 | Plus |
CG9285-PC | 1527 | Dip-B-RC | 1..903 | 17..919 | 4515 | 100 | Plus |
CG9285-PB | 1527 | Dip-B-RB | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1813 | CG9285-RD | 63..966 | 16..919 | 4520 | 100 | Plus |
Dip-B-RB | 1938 | CG9285-RB | 188..1091 | 16..919 | 4520 | 100 | Plus |
Dip-B-RC | 2047 | CG9285-RC | 297..1200 | 16..919 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13784316..13784829 | 406..919 | 2570 | 100 | Plus |
3R | 32079331 | 3R | 13783817..13784094 | 31..308 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 13784159..13784259 | 306..406 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:47:06 has no hits.
BS08684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:28 Download gff for
BS08684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:22 Download gff for
BS08684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9285-PB | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:04 Download gff for
BS08684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RA | 278..1185 | 12..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:51 Download gff for
BS08684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RC | 293..1200 | 12..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:51 Download gff for
BS08684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13783817..13784093 | 31..307 | 100 | -> | Plus |
3R | 13784161..13784259 | 308..406 | 100 | -> | Plus |
3R | 13784317..13784829 | 407..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:04 Download gff for
BS08684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9609539..9609815 | 31..307 | 100 | -> | Plus |
arm_3R | 9609883..9609981 | 308..406 | 100 | -> | Plus |
arm_3R | 9610039..9610551 | 407..919 | 100 | | Plus |
BS08684.complete Sequence
1559 bp (1559 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636234
> BS08684.complete
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCA
ACTGCAACCGGATGATATCCATGTTGTGGCTGCCCTGTGCATGGTGCGCA
ATTCCGTGGGCGAGGAGTGCTACGTGGCCGATGAGGTTATCACCTCGCGA
GCTGGTCTTCATGTGAGGATTGGAAATACTGATGCCGAGGGTCGCATGTG
CATGACCGATGCCCTGTGCCGCATGAAGGAGTTGGTCGTGGAGCAGAATC
TCCCGGATCCGCATCTTTTCACCATTGCCACCTTGACTGGTCACGCCTTC
ATCTCGGCAGGTGAGGGTCAGTCGATTGCCATCGATAACAGCGTGGCCCA
TCGGGAGGATCACGCCAGAAGACTGCAGGCTGCTGGACAGGCCTTCGGAG
AGCCCTTCGAAGTGTCCATTCTCCGTCCCAGTGACTTCTCTTTTAACGCT
GGAAAGGTGATTGGCGAGGATTTGGTGCAGGCCAATAATGCCCCGTCGGT
GAGGACTCCTCGCGGTCACCAGGTGCCCGCCGCCTTTATGATTAAGGCTT
CTGGACTGGACAAACACGGGTTGGATTCAATGCTGCCCATTAAGTACACC
CATATTGATATCGCCGGCAGTGCCGGTGAGCACCCAGCGATGCCCACAGC
TGCCCCTCTTGTTTCCCTGGTGAAGACCCATCTGCAGAAGTAAAAGCTTT
CTAGACCAT
BS08684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1527 | CG9285-PD | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Dip-B-RB | 1527 | CG9285-PB | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Dip-B-RC | 1527 | CG9285-PC | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1813 | CG9285-RD | 63..1591 | 16..1544 | 7645 | 100 | Plus |
Dip-B-RB | 1938 | CG9285-RB | 188..1716 | 16..1544 | 7645 | 100 | Plus |
Dip-B-RC | 2047 | CG9285-RC | 297..1825 | 16..1544 | 7645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13784316..13785454 | 406..1544 | 5695 | 100 | Plus |
3R | 32079331 | 3R | 13783817..13784094 | 31..308 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 13784159..13784259 | 306..406 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:54 has no hits.
BS08684.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:57 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RB | 1..1527 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:32 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RB | 184..1716 | 12..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:05 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RA | 283..1807 | 17..1541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:57 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RB | 184..1716 | 12..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:52 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RC | 298..1822 | 17..1541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:52 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13783817..13784093 | 31..307 | 100 | -> | Plus |
3R | 13784161..13784259 | 308..406 | 100 | -> | Plus |
3R | 13784317..13785451 | 407..1541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:05 Download gff for
BS08684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9609539..9609815 | 31..307 | 100 | -> | Plus |
arm_3R | 9609883..9609981 | 308..406 | 100 | -> | Plus |
arm_3R | 9610039..9611173 | 407..1541 | 100 | | Plus |
BS08684.pep Sequence
Translation from 16 to 1542
> BS08684.pep
MGIEKILPCTLRLNKLMSLAGNDCLCIIDRNAVPNELKATFEEHRKFDKS
FDSSISCFKVPNVDQPVVYAPVSELTDYDDVRSYQEAAKRSMEKVLKAGF
HTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV
QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTPIQVEKYIKPLFDK
LNVNVISDTQVLQKEYPLFAAVNRAADAVERHRGRIIFLEYKPPKPARKT
LMLVGKGVTYDTGGADIKAGGVMAGMSRDKCGAAAVAGFMQVVSQLQPDD
IHVVAALCMVRNSVGEECYVADEVITSRAGLHVRIGNTDAEGRMCMTDAL
CRMKELVVEQNLPDPHLFTIATLTGHAFISAGEGQSIAIDNSVAHREDHA
RRLQAAGQAFGEPFEVSILRPSDFSFNAGKVIGEDLVQANNAPSVRTPRG
HQVPAAFMIKASGLDKHGLDSMLPIKYTHIDIAGSAGEHPAMPTAAPLVS
LVKTHLQK*
BS08684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-PD | 508 | CG9285-PD | 1..508 | 1..508 | 2606 | 100 | Plus |
Dip-B-PB | 508 | CG9285-PB | 1..508 | 1..508 | 2606 | 100 | Plus |
Dip-B-PC | 508 | CG9285-PC | 1..508 | 1..508 | 2606 | 100 | Plus |
Dip-B-PA | 508 | CG9285-PA | 1..508 | 1..508 | 2606 | 100 | Plus |
grsm-PB | 558 | CG7340-PB | 292..434 | 244..392 | 241 | 40 | Plus |