Clone BS08684 Report

Search the DGRC for BS08684

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptDip-B-RA
Protein status:BS08684.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08684.3prime Sequence

911 bp (794 high quality bases) assembled on 2006-01-11

> BS08684.3prime
ATGGTCTAGAAAGCTTTTACTTCTGCAGATGGGTCTTCACCAGGGAAACA
AGAGGGGCAGCTGTGGGCATCGCTGGGTGCTCACCGGCACTGCCGGCGAT
ATCAATATGGGTGTACTTAATGGGCAGCATTGAATCCAACCCGTGTTTGT
CCAGTCCAGAAGCCTTAATCATAAAGGCGGCGGGCACCTGGTGACCGCGA
GGAGTCCTCACCGACGGGGCATTATTGGCCTGCACCAAATCCTCGCCAAT
CACCTTTCCAGCGTTAAAAGAGAAGTCACTGGGACGGAGAATGGACACTT
CGAAGGGCTCTCCGAAGGCCTGTCCAGCAGCCTGCAGTCTTCTGGCGTGA
TCCTCCCGATGGGCCACGCTGTTATCGATGGCAATCGACTGACCCTCACC
TGCCGAGATGAAGGCGTGACCAGTCAAGGTGGCAATGGTGAAAAGATGCG
GATCCGGGAGATTCTGCTCCACGACCAACTCCTTCATGCGGCACAGGGCA
TCGGTCATGCACATGCGACCCTCGGCATCAGTATTTCCAATCCTCACATG
AAGACCAGCTCGCGAGGTGATAACCTCATCGGCCACGTAGCACTCCTCGC
CCACGGAATTGCGCACCATGCACAGGGCAGCCACAACATGGATATCATCC
GGTTGCAGTTGACTGACCACCTGCATGAATCCAGCGACAGCAGCCGCTCC
ACACTTGTCGCGCGACATACCGGCCATCACACCACCGGCCTTGATGTCAG
CACCACCGGTGTCATAGGTAACACCCTTGCCGACCAGCATCAGAGTTTTT
CTCGCCGGCTTTGGAGGCTTGTACTCCAGGAAAATGATGCGACCACAATG
ACGCTCCACTGCATCAGCAGCCGGGTTTACGGCGGCAAACAGGGGATACT
CTTTCTGCAAC

BS08684.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9285-PA 1527 Dip-B-RA 633..1527 911..17 4400 99.6 Minus
CG9285-PC 1527 Dip-B-RC 633..1527 911..17 4400 99.6 Minus
CG9285-PB 1527 Dip-B-RB 633..1527 911..17 4400 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1813 CG9285-RD 696..1591 911..16 4435 99.7 Minus
Dip-B-RB 1938 CG9285-RB 821..1716 911..16 4435 99.7 Minus
Dip-B-RC 2047 CG9285-RC 930..1825 911..16 4435 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784559..13785454 911..16 4435 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:24:26 has no hits.

BS08684.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:27 Download gff for BS08684.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-PA 633..1527 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:21 Download gff for BS08684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9285-PB 633..1527 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:27 Download gff for BS08684.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 915..1810 16..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:02 Download gff for BS08684.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 930..1825 16..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:02 Download gff for BS08684.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13784559..13785454 16..911 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:27 Download gff for BS08684.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9610281..9611176 16..911 99   Minus

BS08684.5prime Sequence

919 bp (781 high quality bases) assembled on 2006-01-11

> BS08684.5prime
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCA
ACTGCAACCGGATGATATC

BS08684.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9285-PA 1527 Dip-B-RA 1..903 17..919 4515 100 Plus
CG9285-PC 1527 Dip-B-RC 1..903 17..919 4515 100 Plus
CG9285-PB 1527 Dip-B-RB 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1813 CG9285-RD 63..966 16..919 4520 100 Plus
Dip-B-RB 1938 CG9285-RB 188..1091 16..919 4520 100 Plus
Dip-B-RC 2047 CG9285-RC 297..1200 16..919 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784316..13784829 406..919 2570 100 Plus
3R 32079331 3R 13783817..13784094 31..308 1390 100 Plus
3R 32079331 3R 13784159..13784259 306..406 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:47:06 has no hits.

BS08684.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:28 Download gff for BS08684.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-PA 1..903 17..919 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:22 Download gff for BS08684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9285-PB 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:04 Download gff for BS08684.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 278..1185 12..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:51 Download gff for BS08684.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 293..1200 12..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:51 Download gff for BS08684.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13783817..13784093 31..307 100 -> Plus
3R 13784161..13784259 308..406 100 -> Plus
3R 13784317..13784829 407..919 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:04 Download gff for BS08684.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9609539..9609815 31..307 100 -> Plus
arm_3R 9609883..9609981 308..406 100 -> Plus
arm_3R 9610039..9610551 407..919 100   Plus

BS08684.complete Sequence

1559 bp (1559 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636234

> BS08684.complete
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCA
ACTGCAACCGGATGATATCCATGTTGTGGCTGCCCTGTGCATGGTGCGCA
ATTCCGTGGGCGAGGAGTGCTACGTGGCCGATGAGGTTATCACCTCGCGA
GCTGGTCTTCATGTGAGGATTGGAAATACTGATGCCGAGGGTCGCATGTG
CATGACCGATGCCCTGTGCCGCATGAAGGAGTTGGTCGTGGAGCAGAATC
TCCCGGATCCGCATCTTTTCACCATTGCCACCTTGACTGGTCACGCCTTC
ATCTCGGCAGGTGAGGGTCAGTCGATTGCCATCGATAACAGCGTGGCCCA
TCGGGAGGATCACGCCAGAAGACTGCAGGCTGCTGGACAGGCCTTCGGAG
AGCCCTTCGAAGTGTCCATTCTCCGTCCCAGTGACTTCTCTTTTAACGCT
GGAAAGGTGATTGGCGAGGATTTGGTGCAGGCCAATAATGCCCCGTCGGT
GAGGACTCCTCGCGGTCACCAGGTGCCCGCCGCCTTTATGATTAAGGCTT
CTGGACTGGACAAACACGGGTTGGATTCAATGCTGCCCATTAAGTACACC
CATATTGATATCGCCGGCAGTGCCGGTGAGCACCCAGCGATGCCCACAGC
TGCCCCTCTTGTTTCCCTGGTGAAGACCCATCTGCAGAAGTAAAAGCTTT
CTAGACCAT

BS08684.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1527 CG9285-PD 1..1527 17..1543 7635 100 Plus
Dip-B-RB 1527 CG9285-PB 1..1527 17..1543 7635 100 Plus
Dip-B-RC 1527 CG9285-PC 1..1527 17..1543 7635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1813 CG9285-RD 63..1591 16..1544 7645 100 Plus
Dip-B-RB 1938 CG9285-RB 188..1716 16..1544 7645 100 Plus
Dip-B-RC 2047 CG9285-RC 297..1825 16..1544 7645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784316..13785454 406..1544 5695 100 Plus
3R 32079331 3R 13783817..13784094 31..308 1390 100 Plus
3R 32079331 3R 13784159..13784259 306..406 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:49:54 has no hits.

BS08684.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:57 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 1..1527 17..1543 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:32 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 184..1716 12..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:05 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 283..1807 17..1541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:57 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 184..1716 12..1544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:52 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 298..1822 17..1541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:52 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13783817..13784093 31..307 100 -> Plus
3R 13784161..13784259 308..406 100 -> Plus
3R 13784317..13785451 407..1541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:05 Download gff for BS08684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9609539..9609815 31..307 100 -> Plus
arm_3R 9609883..9609981 308..406 100 -> Plus
arm_3R 9610039..9611173 407..1541 100   Plus

BS08684.pep Sequence

Translation from 16 to 1542

> BS08684.pep
MGIEKILPCTLRLNKLMSLAGNDCLCIIDRNAVPNELKATFEEHRKFDKS
FDSSISCFKVPNVDQPVVYAPVSELTDYDDVRSYQEAAKRSMEKVLKAGF
HTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV
QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTPIQVEKYIKPLFDK
LNVNVISDTQVLQKEYPLFAAVNRAADAVERHRGRIIFLEYKPPKPARKT
LMLVGKGVTYDTGGADIKAGGVMAGMSRDKCGAAAVAGFMQVVSQLQPDD
IHVVAALCMVRNSVGEECYVADEVITSRAGLHVRIGNTDAEGRMCMTDAL
CRMKELVVEQNLPDPHLFTIATLTGHAFISAGEGQSIAIDNSVAHREDHA
RRLQAAGQAFGEPFEVSILRPSDFSFNAGKVIGEDLVQANNAPSVRTPRG
HQVPAAFMIKASGLDKHGLDSMLPIKYTHIDIAGSAGEHPAMPTAAPLVS
LVKTHLQK*

BS08684.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-PD 508 CG9285-PD 1..508 1..508 2606 100 Plus
Dip-B-PB 508 CG9285-PB 1..508 1..508 2606 100 Plus
Dip-B-PC 508 CG9285-PC 1..508 1..508 2606 100 Plus
Dip-B-PA 508 CG9285-PA 1..508 1..508 2606 100 Plus
grsm-PB 558 CG7340-PB 292..434 244..392 241 40 Plus