Clone BS08685 Report

Search the DGRC for BS08685

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptDsor1-RA
Protein status:BS08685.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08685.3prime Sequence

845 bp (813 high quality bases) assembled on 2006-01-11

> BS08685.3prime
ATGGTCTAGAAAGCTTCTAGTTGGGCGACGTATTACGCTTTGGCGTCGAT
GGCGGCAGGTCCATTGTCTTGCACACCCAGCCGGATATATCCACCTCCTC
CAATTCCGCCTTGCGTATCCACGGATGACTCAGCAGGGTCTTGAGATCTG
CCCGCTCGTCGGGCTGTTTCTTCAGGCAGATGTCCACGAAGTCCTTGAAC
TCGGTGGAGAAGATCTTGTGCTCTAGCTTGGGCGGCGGTTCGTTTACAAT
ATAATCCAGCAGCTCGAAGATGGCCATTGCCCTGGGCTCGTCCGTCGGCT
GGCCGCTCTCCTCCGCATTGTCGGCGAATATCGACTCCAGGGTGGCGGTG
TTTGGCGGCGGGATGGGGTACATGCCGATGGCCATCTCCACCAGCGACAG
ACCCAACGACCAGATGTCCGACTGCACGGAGTAGTGGGTGCCCTGCAATC
GCTCCGGCGACATATAGCTACGGGTGCCCACAAAGGAGTTGGCCATCGAG
TCGATCAGTTGACCGGAGACGCCGAAATCACAGATCTTGATCTCGCCGCT
GCTATTGACGAGGATATTGCTCGGCTTCACGTCACGGTGGATGATGGCGT
GATTGTCGCGCAGATAGCTCAAGCCCTTGAGCACCGCCAGCGTGATCCTG
CCGAGAATGGACTCTGGTATTCGACCGGCCCGCTTGAGGATCAGGTCAAG
TGATCCACCGTCCATATACTCCATGCAGATACTGATCTCGCCGTCGCTGT
AGAAGGCGCCGTAGAAACCGACAATGTGCGGGAAATTACATTCGTGCAGG
ACTTTCAGTTCGCGCAGGATCTGTTTCTTGATCGCCGGCTTCACC

BS08685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15793-PA 1191 Dsor1-RA 363..1191 845..17 4145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsor1-RB 1503 CG15793-RB 524..1353 845..16 4150 100 Minus
Dsor1-RA 1799 CG15793-RA 820..1649 845..16 4150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9248794..9249181 845..458 1940 100 Minus
X 23542271 X 9249374..9249701 458..131 1640 100 Minus
X 23542271 X 9249772..9249887 131..16 580 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:30:18 has no hits.

BS08685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:29 Download gff for BS08685.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsor1-PA 363..1191 17..845 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:24 Download gff for BS08685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15793-PA 363..1191 17..845 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:36 Download gff for BS08685.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 820..1656 8..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:49 Download gff for BS08685.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 820..1656 8..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:49 Download gff for BS08685.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9248794..9249181 458..845 100 -> Minus
X 9249375..9249701 131..457 100 -> Minus
X 9249773..9249894 8..130 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:36 Download gff for BS08685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9142827..9143214 458..845 100 -> Minus
arm_X 9143408..9143734 131..457 100 -> Minus
arm_X 9143806..9143927 8..130 97   Minus

BS08685.5prime Sequence

878 bp (778 high quality bases) assembled on 2006-01-11

> BS08685.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGC
CGGTAAATACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCG
CCATTCAAAACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCC
CAAGACGAGCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGG
GCGACACGGAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAG
ATCGGCGAGCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATC
GGGCAATGGCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGA
TCATGGCCAGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAA
CAGATCCTGCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACAT
TGTCGGTTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCA
TGGAGTATATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGT
CGAATACCAGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGG
CTTGAGCTATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGC
CGAGCAATATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTC
GGCGTCTCCGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCAC
CCGTAGCTATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGC
AGTCGGACATCTGGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGC
ATGTACCCCATCCCGCCGCCAAACACCG

BS08685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15793-PA 1191 Dsor1-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsor1-RA 1799 CG15793-RA 458..1319 17..878 4310 100 Plus
Dsor1-RB 1503 CG15793-RB 171..1023 17..878 4165 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9248542..9249181 127..766 3200 100 Plus
X 23542271 X 9249374..9249486 766..878 565 100 Plus
X 23542271 X 9247799..9247908 17..126 550 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:59:26 has no hits.

BS08685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:30 Download gff for BS08685.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsor1-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:25 Download gff for BS08685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15793-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:26 Download gff for BS08685.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 449..1319 6..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:31 Download gff for BS08685.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 449..1319 6..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:31 Download gff for BS08685.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9247790..9247908 6..126 96 -> Plus
X 9248542..9249181 127..766 100 -> Plus
X 9249375..9249486 767..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:26 Download gff for BS08685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9141823..9141941 6..126 96 -> Plus
arm_X 9142575..9143214 127..766 100 -> Plus
arm_X 9143408..9143519 767..878 100   Plus

BS08685.complete Sequence

1223 bp (1223 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636235

> BS08685.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGC
CGGTAAATACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCG
CCATTCAAAACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCC
CAAGACGAGCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGG
GCGACACGGAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAG
ATCGGCGAGCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATC
GGGCAATGGCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGA
TCATGGCCAGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAA
CAGATCCTGCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACAT
TGTCGGTTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCA
TGGAGTATATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGT
CGAATACCAGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGG
CTTGAGCTATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGC
CGAGCAATATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTC
GGCGTCTCCGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCAC
CCGTAGCTATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGC
AGTCGGACATCTGGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGC
ATGTACCCCATCCCGCCGCCAAACACCGCCACCCTGGAGTCGATATTCGC
CGACAATGCGGAGGAGAGCGGCCAGCCGACGGACGAGCCCAGGGCAATGG
CCATCTTCGAGCTGCTGGATTATATTGTAAACGAACCGCCGCCCAAGCTA
GAGCACAAGATCTTCTCCACCGAGTTCAAGGACTTCGTGGACATCTGCCT
GAAGAAACAGCCCGACGAGCGGGCAGATCTCAAGACCCTGCTGAGTCATC
CGTGGATACGCAAGGCGGAATTGGAGGAGGTGGATATATCCGGCTGGGTG
TGCAAGACAATGGACCTGCCGCCATCGACGCCAAAGCGTAATACGTCGCC
CAACTAGAAGCTTTCTAGACCAT

BS08685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsor1-RA 1191 CG15793-PA 1..1191 17..1207 5955 100 Plus
Dsor1-RB 1182 CG15793-PB 1..1182 17..1207 5785 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsor1-RA 1799 CG15793-RA 458..1649 17..1208 5960 100 Plus
Dsor1-RB 1503 CG15793-RB 171..1353 17..1208 5790 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9248542..9249181 127..766 3200 100 Plus
X 23542271 X 9249374..9249701 766..1093 1640 100 Plus
X 23542271 X 9249772..9249887 1093..1208 580 100 Plus
X 23542271 X 9247799..9247908 17..126 550 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:49:38 has no hits.

BS08685.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:58 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:34 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 2..1203 15..1216 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:17 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 458..1648 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:59 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 2..1203 15..1216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:43 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
Dsor1-RA 458..1648 17..1207 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:43 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
X 9247799..9247908 17..126 100 -> Plus
X 9248542..9249181 127..766 100 -> Plus
X 9249375..9249701 767..1093 100 -> Plus
X 9249773..9249886 1094..1207 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:17 Download gff for BS08685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9143806..9143919 1094..1207 100   Plus
arm_X 9141832..9141941 17..126 100 -> Plus
arm_X 9142575..9143214 127..766 100 -> Plus
arm_X 9143408..9143734 767..1093 100 -> Plus

BS08685.pep Sequence

Translation from 16 to 1206

> BS08685.pep
MSKNKLNLVLPPVNTEATVAAATVAPTPPFKTPSGTDTHSLLGKPKTSID
ALTETLEGLDMGDTERKRIKMFLSQKEKIGELSDEDLEKLGELGSGNGGV
VMKVRHTHTHLIMARKLIHLEVKPAIKKQILRELKVLHECNFPHIVGFYG
AFYSDGEISICMEYMDGGSLDLILKRAGRIPESILGRITLAVLKGLSYLR
DNHAIIHRDVKPSNILVNSSGEIKICDFGVSGQLIDSMANSFVGTRSYMS
PERLQGTHYSVQSDIWSLGLSLVEMAIGMYPIPPPNTATLESIFADNAEE
SGQPTDEPRAMAIFELLDYIVNEPPPKLEHKIFSTEFKDFVDICLKKQPD
ERADLKTLLSHPWIRKAELEEVDISGWVCKTMDLPPSTPKRNTSPN*

BS08685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsor1-PA 396 CG15793-PA 1..396 1..396 2054 100 Plus
Dsor1-PB 393 CG15793-PB 1..393 1..396 2023 99.2 Plus
lic-PA 334 CG12244-PA 40..332 81..389 526 37.3 Plus
Mkk4-PC 424 CG9738-PC 23..406 1..383 507 34.1 Plus
Mkk4-PB 424 CG9738-PB 23..406 1..383 507 34.1 Plus