Clone Sequence Records
BS08685.3prime Sequence
845 bp (813 high quality bases) assembled on 2006-01-11
> BS08685.3prime
ATGGTCTAGAAAGCTTCTAGTTGGGCGACGTATTACGCTTTGGCGTCGAT
GGCGGCAGGTCCATTGTCTTGCACACCCAGCCGGATATATCCACCTCCTC
CAATTCCGCCTTGCGTATCCACGGATGACTCAGCAGGGTCTTGAGATCTG
CCCGCTCGTCGGGCTGTTTCTTCAGGCAGATGTCCACGAAGTCCTTGAAC
TCGGTGGAGAAGATCTTGTGCTCTAGCTTGGGCGGCGGTTCGTTTACAAT
ATAATCCAGCAGCTCGAAGATGGCCATTGCCCTGGGCTCGTCCGTCGGCT
GGCCGCTCTCCTCCGCATTGTCGGCGAATATCGACTCCAGGGTGGCGGTG
TTTGGCGGCGGGATGGGGTACATGCCGATGGCCATCTCCACCAGCGACAG
ACCCAACGACCAGATGTCCGACTGCACGGAGTAGTGGGTGCCCTGCAATC
GCTCCGGCGACATATAGCTACGGGTGCCCACAAAGGAGTTGGCCATCGAG
TCGATCAGTTGACCGGAGACGCCGAAATCACAGATCTTGATCTCGCCGCT
GCTATTGACGAGGATATTGCTCGGCTTCACGTCACGGTGGATGATGGCGT
GATTGTCGCGCAGATAGCTCAAGCCCTTGAGCACCGCCAGCGTGATCCTG
CCGAGAATGGACTCTGGTATTCGACCGGCCCGCTTGAGGATCAGGTCAAG
TGATCCACCGTCCATATACTCCATGCAGATACTGATCTCGCCGTCGCTGT
AGAAGGCGCCGTAGAAACCGACAATGTGCGGGAAATTACATTCGTGCAGG
ACTTTCAGTTCGCGCAGGATCTGTTTCTTGATCGCCGGCTTCACC
BS08685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15793-PA | 1191 | Dsor1-RA | 363..1191 | 845..17 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RB | 1503 | CG15793-RB | 524..1353 | 845..16 | 4150 | 100 | Minus |
Dsor1-RA | 1799 | CG15793-RA | 820..1649 | 845..16 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9248794..9249181 | 845..458 | 1940 | 100 | Minus |
X | 23542271 | X | 9249374..9249701 | 458..131 | 1640 | 100 | Minus |
X | 23542271 | X | 9249772..9249887 | 131..16 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:30:18 has no hits.
BS08685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:29 Download gff for
BS08685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-PA | 363..1191 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:24 Download gff for
BS08685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15793-PA | 363..1191 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:36 Download gff for
BS08685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 820..1656 | 8..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:49 Download gff for
BS08685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 820..1656 | 8..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:49 Download gff for
BS08685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9248794..9249181 | 458..845 | 100 | -> | Minus |
X | 9249375..9249701 | 131..457 | 100 | -> | Minus |
X | 9249773..9249894 | 8..130 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:36 Download gff for
BS08685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9142827..9143214 | 458..845 | 100 | -> | Minus |
arm_X | 9143408..9143734 | 131..457 | 100 | -> | Minus |
arm_X | 9143806..9143927 | 8..130 | 97 | | Minus |
BS08685.5prime Sequence
878 bp (778 high quality bases) assembled on 2006-01-11
> BS08685.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGC
CGGTAAATACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCG
CCATTCAAAACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCC
CAAGACGAGCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGG
GCGACACGGAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAG
ATCGGCGAGCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATC
GGGCAATGGCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGA
TCATGGCCAGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAA
CAGATCCTGCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACAT
TGTCGGTTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCA
TGGAGTATATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGT
CGAATACCAGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGG
CTTGAGCTATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGC
CGAGCAATATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTC
GGCGTCTCCGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCAC
CCGTAGCTATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGC
AGTCGGACATCTGGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGC
ATGTACCCCATCCCGCCGCCAAACACCG
BS08685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15793-PA | 1191 | Dsor1-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RA | 1799 | CG15793-RA | 458..1319 | 17..878 | 4310 | 100 | Plus |
Dsor1-RB | 1503 | CG15793-RB | 171..1023 | 17..878 | 4165 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9248542..9249181 | 127..766 | 3200 | 100 | Plus |
X | 23542271 | X | 9249374..9249486 | 766..878 | 565 | 100 | Plus |
X | 23542271 | X | 9247799..9247908 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:59:26 has no hits.
BS08685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:30 Download gff for
BS08685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:25 Download gff for
BS08685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15793-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:26 Download gff for
BS08685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 449..1319 | 6..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:31 Download gff for
BS08685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 449..1319 | 6..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:31 Download gff for
BS08685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9247790..9247908 | 6..126 | 96 | -> | Plus |
X | 9248542..9249181 | 127..766 | 100 | -> | Plus |
X | 9249375..9249486 | 767..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:26 Download gff for
BS08685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9141823..9141941 | 6..126 | 96 | -> | Plus |
arm_X | 9142575..9143214 | 127..766 | 100 | -> | Plus |
arm_X | 9143408..9143519 | 767..878 | 100 | | Plus |
BS08685.complete Sequence
1223 bp (1223 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636235
> BS08685.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGC
CGGTAAATACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCG
CCATTCAAAACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCC
CAAGACGAGCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGG
GCGACACGGAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAG
ATCGGCGAGCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATC
GGGCAATGGCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGA
TCATGGCCAGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAA
CAGATCCTGCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACAT
TGTCGGTTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCA
TGGAGTATATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGT
CGAATACCAGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGG
CTTGAGCTATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGC
CGAGCAATATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTC
GGCGTCTCCGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCAC
CCGTAGCTATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGC
AGTCGGACATCTGGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGC
ATGTACCCCATCCCGCCGCCAAACACCGCCACCCTGGAGTCGATATTCGC
CGACAATGCGGAGGAGAGCGGCCAGCCGACGGACGAGCCCAGGGCAATGG
CCATCTTCGAGCTGCTGGATTATATTGTAAACGAACCGCCGCCCAAGCTA
GAGCACAAGATCTTCTCCACCGAGTTCAAGGACTTCGTGGACATCTGCCT
GAAGAAACAGCCCGACGAGCGGGCAGATCTCAAGACCCTGCTGAGTCATC
CGTGGATACGCAAGGCGGAATTGGAGGAGGTGGATATATCCGGCTGGGTG
TGCAAGACAATGGACCTGCCGCCATCGACGCCAAAGCGTAATACGTCGCC
CAACTAGAAGCTTTCTAGACCAT
BS08685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RA | 1191 | CG15793-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Dsor1-RB | 1182 | CG15793-PB | 1..1182 | 17..1207 | 5785 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RA | 1799 | CG15793-RA | 458..1649 | 17..1208 | 5960 | 100 | Plus |
Dsor1-RB | 1503 | CG15793-RB | 171..1353 | 17..1208 | 5790 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9248542..9249181 | 127..766 | 3200 | 100 | Plus |
X | 23542271 | X | 9249374..9249701 | 766..1093 | 1640 | 100 | Plus |
X | 23542271 | X | 9249772..9249887 | 1093..1208 | 580 | 100 | Plus |
X | 23542271 | X | 9247799..9247908 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:49:38 has no hits.
BS08685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:58 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 1..1191 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:34 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 2..1203 | 15..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:17 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 458..1648 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:59 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 2..1203 | 15..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:43 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 458..1648 | 17..1207 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:43 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9247799..9247908 | 17..126 | 100 | -> | Plus |
X | 9248542..9249181 | 127..766 | 100 | -> | Plus |
X | 9249375..9249701 | 767..1093 | 100 | -> | Plus |
X | 9249773..9249886 | 1094..1207 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:17 Download gff for
BS08685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9143806..9143919 | 1094..1207 | 100 | | Plus |
arm_X | 9141832..9141941 | 17..126 | 100 | -> | Plus |
arm_X | 9142575..9143214 | 127..766 | 100 | -> | Plus |
arm_X | 9143408..9143734 | 767..1093 | 100 | -> | Plus |
BS08685.pep Sequence
Translation from 16 to 1206
> BS08685.pep
MSKNKLNLVLPPVNTEATVAAATVAPTPPFKTPSGTDTHSLLGKPKTSID
ALTETLEGLDMGDTERKRIKMFLSQKEKIGELSDEDLEKLGELGSGNGGV
VMKVRHTHTHLIMARKLIHLEVKPAIKKQILRELKVLHECNFPHIVGFYG
AFYSDGEISICMEYMDGGSLDLILKRAGRIPESILGRITLAVLKGLSYLR
DNHAIIHRDVKPSNILVNSSGEIKICDFGVSGQLIDSMANSFVGTRSYMS
PERLQGTHYSVQSDIWSLGLSLVEMAIGMYPIPPPNTATLESIFADNAEE
SGQPTDEPRAMAIFELLDYIVNEPPPKLEHKIFSTEFKDFVDICLKKQPD
ERADLKTLLSHPWIRKAELEEVDISGWVCKTMDLPPSTPKRNTSPN*
BS08685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-PA | 396 | CG15793-PA | 1..396 | 1..396 | 2054 | 100 | Plus |
Dsor1-PB | 393 | CG15793-PB | 1..393 | 1..396 | 2023 | 99.2 | Plus |
lic-PA | 334 | CG12244-PA | 40..332 | 81..389 | 526 | 37.3 | Plus |
Mkk4-PC | 424 | CG9738-PC | 23..406 | 1..383 | 507 | 34.1 | Plus |
Mkk4-PB | 424 | CG9738-PB | 23..406 | 1..383 | 507 | 34.1 | Plus |