Clone BS08689 Report

Search the DGRC for BS08689

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:86
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptelgi-RA
Protein status:BS08689.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08689.3prime Sequence

903 bp (784 high quality bases) assembled on 2006-01-11

> BS08689.3prime
ATGGTCTAGAAAGCTTCTACTCGATGCCATGGGCGAAGATCATGACCAAA
CCTGGATCGATCATGACGTCCTCAGTCATGTGGAGGTTGTCGCAGCTCAA
AACGAGCACAGCTTGCTTGCCTGGAATGCGTCGACACACATAGTTGTCGT
AGATCCTACGATTGGTTTGACGTGTCTCTAGCGAACTGAGCCCACGGGGC
CAACGTCGCTCGTGGCAGAACTCCATAAGACTATCCAGGATGTGTGGCGG
ACAGCCCGACTCGGACAAAGCGCGCTTGATCATGAGCTGCAGTGCATCGT
CGGGCGTAGAGATCATTCCCCCCCAGCGCGTAACCCTGGCCCGGGGCAGT
GTGCTGCTCCAGCGGATCACCTCGTCGCGCTCCATCTGGTCGGCTATGGC
CCGCATCGCAGGATTGGAGACGCGCATGGCACGCATAAAGTCCTTGAATA
GCTGCAGCTCGCGCTTCAGTTCGTTGATAGTCAGCTGCTGGTCGGTGAGC
TCCGATTTGAGCTCACCCATTTTTTCCGTCTGCTTGACAATTAAAGTGCG
CAGCTCCCGCACGCAGTTGTGGTCCTTTAGCTCATCCTTGGGTATGTCAA
AGCCGCATCCCTTCTCGCAGGGAAATGGTCGCTTCGGATTGTGAATGCAT
TCGTCCAAATGGGAATTGTAGGCGTCTAGCTTGAGAACAGCCGTGCAGCC
ATAAGGCGCATTGTCACAGGTGATTGACAGTCTGGACAGTAGGTTGCGCA
ATATGCGAGGCACTGCCCGCAAGTTGGCAGTAGTCAGGGAATTTCGATCC
ACCGGACAAGTGGGCTGGCGGGTTAGCCACTCGTTAATGCATCCGCGGCA
GAAGGCGTGCTCGCACATCACGGCCTGCAGCGGATCCCTCAGCACTCCGG
AGC

BS08689.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17033-PA 948 CG17033-RA 78..948 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-RB 1534 CG17033-RB 185..1071 903..17 4390 99.8 Minus
elgi-RA 1611 CG17033-RA 262..1148 903..17 4390 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15957135..15957583 735..287 2245 100 Minus
3L 28110227 3L 15957637..15957805 288..120 845 100 Minus
3L 28110227 3L 15956920..15957065 877..732 730 100 Minus
3L 28110227 3L 15957864..15957970 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:01:30 has no hits.

BS08689.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:33 Download gff for BS08689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17033-PA 62..948 17..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:28 Download gff for BS08689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17033-PA 62..948 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:47:30 Download gff for BS08689.3prime
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 262..1154 9..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:29 Download gff for BS08689.3prime
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 262..1154 9..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:29 Download gff for BS08689.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15957639..15957804 121..286 100 -> Minus
3L 15957867..15957976 9..120 96   Minus
3L 15956811..15956839 875..903 93 -> Minus
3L 15956923..15957065 732..874 100 -> Minus
3L 15957139..15957583 287..731 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:47:30 Download gff for BS08689.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15949911..15949939 875..903 93 -> Minus
arm_3L 15950023..15950165 732..874 100 -> Minus
arm_3L 15950239..15950683 287..731 100 -> Minus
arm_3L 15950739..15950904 121..286 100 -> Minus
arm_3L 15950967..15951076 9..120 96   Minus

BS08689.5prime Sequence

943 bp (848 high quality bases) assembled on 2006-01-11

> BS08689.5prime
GAAGTTATCAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGG
TGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCG
CTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGA
GTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTA
CTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGA
CTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAA
GCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGC
GACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAG
CTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCA
GACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGA
CTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGT
GCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGA
GCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTA
CGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATG
ATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAG
TCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGC
TAGAGACACGTCAAACCAATCGTAGGATCTACGACAACTATGTGTGTCGA
CGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGACAACCTCAC
ATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGATCT

BS08689.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17033-PA 948 CG17033-RA 1..882 17..898 4410 100 Plus
CG17033-PA 948 CG17033-RA 883..928 898..943 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-RB 1534 CG17033-RB 124..1051 17..943 4615 99.9 Plus
elgi-RA 1611 CG17033-RA 201..1128 17..943 4615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15957135..15957583 246..694 2245 100 Plus
3L 28110227 3L 15957637..15957805 693..861 845 100 Plus
3L 28110227 3L 15956920..15957065 104..249 730 100 Plus
3L 28110227 3L 15956750..15956840 17..107 455 100 Plus
3L 28110227 3L 15957864..15957950 858..943 385 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 05:14:25 has no hits.

BS08689.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:35 Download gff for BS08689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17033-PA 1..928 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:30 Download gff for BS08689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17033-PA 1..928 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:08 Download gff for BS08689.5prime
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 201..1128 17..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:21 Download gff for BS08689.5prime
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 201..1128 17..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:21 Download gff for BS08689.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15956750..15956839 17..106 100 -> Plus
3L 15956923..15957065 107..249 100 -> Plus
3L 15957139..15957583 250..694 100 -> Plus
3L 15957639..15957804 695..860 100 -> Plus
3L 15957867..15957950 861..943 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:08 Download gff for BS08689.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15950739..15950904 695..860 100 -> Plus
arm_3L 15950967..15951050 861..943 98   Plus
arm_3L 15949850..15949939 17..106 100 -> Plus
arm_3L 15950023..15950165 107..249 100 -> Plus
arm_3L 15950239..15950683 250..694 100 -> Plus

BS08689.complete Sequence

980 bp (980 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636237

> BS08689.complete
GAAGTTATCAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGG
TGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCG
CTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGA
GTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTA
CTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGA
CTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAA
GCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGC
GACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAG
CTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCA
GACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGA
CTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGT
GCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGA
GCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTA
CGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATG
ATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAG
TCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGC
TAGAGACACGTCAAACCAATCGTAGGATCTACGACAACTATGTGTGTCGA
CGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGACAACCTCCA
CATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGATCTTCGCCC
ATGGCATCGAGTAGAAGCTTTCTAGACCAT

BS08689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-RB 948 CG17033-PB 1..948 17..964 4740 100 Plus
elgi-RA 948 CG17033-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-RB 1534 CG17033-RB 124..1071 17..964 4740 100 Plus
elgi-RA 1611 CG17033-RA 201..1148 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15957135..15957583 246..694 2245 100 Plus
3L 28110227 3L 15957637..15957805 693..861 845 100 Plus
3L 28110227 3L 15956920..15957065 104..249 730 100 Plus
3L 28110227 3L 15957864..15957970 858..964 535 100 Plus
3L 28110227 3L 15956750..15956840 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:00:07 has no hits.

BS08689.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:41 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:56 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 201..1154 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:50 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 201..1148 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:41 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 201..1154 17..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:56 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 201..1148 17..964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:56 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15957639..15957804 695..860 100 -> Plus
3L 15957867..15957970 861..964 100   Plus
3L 15956750..15956839 17..106 100 -> Plus
3L 15956923..15957065 107..249 100 -> Plus
3L 15957139..15957583 250..694 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:50 Download gff for BS08689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15949850..15949939 17..106 100 -> Plus
arm_3L 15950023..15950165 107..249 100 -> Plus
arm_3L 15950239..15950683 250..694 100 -> Plus
arm_3L 15950739..15950904 695..860 100 -> Plus
arm_3L 15950967..15951070 861..964 100   Plus

BS08689.pep Sequence

Translation from 16 to 963

> BS08689.pep
MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQ
PTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYN
SHLDECIHNPKRPFPCEKGCGFDIPKDELKDHNCVRELRTLIVKQTEKMG
ELKSELTDQQLTINELKRELQLFKDFMRAMRVSNPAMRAIADQMERDEVI
RWSSTLPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDSLMEFC
HERRWPRGLSSLETRQTNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDV
MIDPGLVMIFAHGIE*

BS08689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-PB 315 CG17033-PB 1..315 1..315 1690 100 Plus
elgi-PA 315 CG17033-PA 1..315 1..315 1690 100 Plus
CG9014-PB 328 CG9014-PB 1..318 1..314 804 45.3 Plus
CG9014-PA 328 CG9014-PA 1..318 1..314 804 45.3 Plus