Clone Sequence Records
BS08689.3prime Sequence
903 bp (784 high quality bases) assembled on 2006-01-11
> BS08689.3prime
ATGGTCTAGAAAGCTTCTACTCGATGCCATGGGCGAAGATCATGACCAAA
CCTGGATCGATCATGACGTCCTCAGTCATGTGGAGGTTGTCGCAGCTCAA
AACGAGCACAGCTTGCTTGCCTGGAATGCGTCGACACACATAGTTGTCGT
AGATCCTACGATTGGTTTGACGTGTCTCTAGCGAACTGAGCCCACGGGGC
CAACGTCGCTCGTGGCAGAACTCCATAAGACTATCCAGGATGTGTGGCGG
ACAGCCCGACTCGGACAAAGCGCGCTTGATCATGAGCTGCAGTGCATCGT
CGGGCGTAGAGATCATTCCCCCCCAGCGCGTAACCCTGGCCCGGGGCAGT
GTGCTGCTCCAGCGGATCACCTCGTCGCGCTCCATCTGGTCGGCTATGGC
CCGCATCGCAGGATTGGAGACGCGCATGGCACGCATAAAGTCCTTGAATA
GCTGCAGCTCGCGCTTCAGTTCGTTGATAGTCAGCTGCTGGTCGGTGAGC
TCCGATTTGAGCTCACCCATTTTTTCCGTCTGCTTGACAATTAAAGTGCG
CAGCTCCCGCACGCAGTTGTGGTCCTTTAGCTCATCCTTGGGTATGTCAA
AGCCGCATCCCTTCTCGCAGGGAAATGGTCGCTTCGGATTGTGAATGCAT
TCGTCCAAATGGGAATTGTAGGCGTCTAGCTTGAGAACAGCCGTGCAGCC
ATAAGGCGCATTGTCACAGGTGATTGACAGTCTGGACAGTAGGTTGCGCA
ATATGCGAGGCACTGCCCGCAAGTTGGCAGTAGTCAGGGAATTTCGATCC
ACCGGACAAGTGGGCTGGCGGGTTAGCCACTCGTTAATGCATCCGCGGCA
GAAGGCGTGCTCGCACATCACGGCCTGCAGCGGATCCCTCAGCACTCCGG
AGC
BS08689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17033-PA | 948 | CG17033-RA | 78..948 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 185..1071 | 903..17 | 4390 | 99.8 | Minus |
elgi-RA | 1611 | CG17033-RA | 262..1148 | 903..17 | 4390 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 735..287 | 2245 | 100 | Minus |
3L | 28110227 | 3L | 15957637..15957805 | 288..120 | 845 | 100 | Minus |
3L | 28110227 | 3L | 15956920..15957065 | 877..732 | 730 | 100 | Minus |
3L | 28110227 | 3L | 15957864..15957970 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:01:30 has no hits.
BS08689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:33 Download gff for
BS08689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 62..948 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:28 Download gff for
BS08689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 62..948 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:47:30 Download gff for
BS08689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 262..1154 | 9..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:29 Download gff for
BS08689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 262..1154 | 9..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:29 Download gff for
BS08689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15957639..15957804 | 121..286 | 100 | -> | Minus |
3L | 15957867..15957976 | 9..120 | 96 | | Minus |
3L | 15956811..15956839 | 875..903 | 93 | -> | Minus |
3L | 15956923..15957065 | 732..874 | 100 | -> | Minus |
3L | 15957139..15957583 | 287..731 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:47:30 Download gff for
BS08689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15949911..15949939 | 875..903 | 93 | -> | Minus |
arm_3L | 15950023..15950165 | 732..874 | 100 | -> | Minus |
arm_3L | 15950239..15950683 | 287..731 | 100 | -> | Minus |
arm_3L | 15950739..15950904 | 121..286 | 100 | -> | Minus |
arm_3L | 15950967..15951076 | 9..120 | 96 | | Minus |
BS08689.5prime Sequence
943 bp (848 high quality bases) assembled on 2006-01-11
> BS08689.5prime
GAAGTTATCAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGG
TGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCG
CTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGA
GTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTA
CTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGA
CTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAA
GCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGC
GACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAG
CTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCA
GACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGA
CTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGT
GCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGA
GCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTA
CGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATG
ATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAG
TCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGC
TAGAGACACGTCAAACCAATCGTAGGATCTACGACAACTATGTGTGTCGA
CGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGACAACCTCAC
ATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGATCT
BS08689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17033-PA | 948 | CG17033-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
CG17033-PA | 948 | CG17033-RA | 883..928 | 898..943 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 124..1051 | 17..943 | 4615 | 99.9 | Plus |
elgi-RA | 1611 | CG17033-RA | 201..1128 | 17..943 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 246..694 | 2245 | 100 | Plus |
3L | 28110227 | 3L | 15957637..15957805 | 693..861 | 845 | 100 | Plus |
3L | 28110227 | 3L | 15956920..15957065 | 104..249 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15956750..15956840 | 17..107 | 455 | 100 | Plus |
3L | 28110227 | 3L | 15957864..15957950 | 858..943 | 385 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:14:25 has no hits.
BS08689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:35 Download gff for
BS08689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 1..928 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:30 Download gff for
BS08689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 1..928 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:08 Download gff for
BS08689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1128 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:21 Download gff for
BS08689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1128 | 17..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:21 Download gff for
BS08689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15956750..15956839 | 17..106 | 100 | -> | Plus |
3L | 15956923..15957065 | 107..249 | 100 | -> | Plus |
3L | 15957139..15957583 | 250..694 | 100 | -> | Plus |
3L | 15957639..15957804 | 695..860 | 100 | -> | Plus |
3L | 15957867..15957950 | 861..943 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:08 Download gff for
BS08689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15950739..15950904 | 695..860 | 100 | -> | Plus |
arm_3L | 15950967..15951050 | 861..943 | 98 | | Plus |
arm_3L | 15949850..15949939 | 17..106 | 100 | -> | Plus |
arm_3L | 15950023..15950165 | 107..249 | 100 | -> | Plus |
arm_3L | 15950239..15950683 | 250..694 | 100 | -> | Plus |
BS08689.complete Sequence
980 bp (980 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636237
> BS08689.complete
GAAGTTATCAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGG
TGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCG
CTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGA
GTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTA
CTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGA
CTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAA
GCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGC
GACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAG
CTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCA
GACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGA
CTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGT
GCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGA
GCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTA
CGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATG
ATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAG
TCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGC
TAGAGACACGTCAAACCAATCGTAGGATCTACGACAACTATGTGTGTCGA
CGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGACAACCTCCA
CATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGATCTTCGCCC
ATGGCATCGAGTAGAAGCTTTCTAGACCAT
BS08689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 948 | CG17033-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
elgi-RA | 948 | CG17033-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 124..1071 | 17..964 | 4740 | 100 | Plus |
elgi-RA | 1611 | CG17033-RA | 201..1148 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 246..694 | 2245 | 100 | Plus |
3L | 28110227 | 3L | 15957637..15957805 | 693..861 | 845 | 100 | Plus |
3L | 28110227 | 3L | 15956920..15957065 | 104..249 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15957864..15957970 | 858..964 | 535 | 100 | Plus |
3L | 28110227 | 3L | 15956750..15956840 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:07 has no hits.
BS08689.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:41 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:56 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 201..1154 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:50 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1148 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:41 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 201..1154 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:56 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1148 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:56 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15957639..15957804 | 695..860 | 100 | -> | Plus |
3L | 15957867..15957970 | 861..964 | 100 | | Plus |
3L | 15956750..15956839 | 17..106 | 100 | -> | Plus |
3L | 15956923..15957065 | 107..249 | 100 | -> | Plus |
3L | 15957139..15957583 | 250..694 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:50 Download gff for
BS08689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15949850..15949939 | 17..106 | 100 | -> | Plus |
arm_3L | 15950023..15950165 | 107..249 | 100 | -> | Plus |
arm_3L | 15950239..15950683 | 250..694 | 100 | -> | Plus |
arm_3L | 15950739..15950904 | 695..860 | 100 | -> | Plus |
arm_3L | 15950967..15951070 | 861..964 | 100 | | Plus |
BS08689.pep Sequence
Translation from 16 to 963
> BS08689.pep
MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQ
PTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYN
SHLDECIHNPKRPFPCEKGCGFDIPKDELKDHNCVRELRTLIVKQTEKMG
ELKSELTDQQLTINELKRELQLFKDFMRAMRVSNPAMRAIADQMERDEVI
RWSSTLPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDSLMEFC
HERRWPRGLSSLETRQTNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDV
MIDPGLVMIFAHGIE*
BS08689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-PB | 315 | CG17033-PB | 1..315 | 1..315 | 1690 | 100 | Plus |
elgi-PA | 315 | CG17033-PA | 1..315 | 1..315 | 1690 | 100 | Plus |
CG9014-PB | 328 | CG9014-PB | 1..318 | 1..314 | 804 | 45.3 | Plus |
CG9014-PA | 328 | CG9014-PA | 1..318 | 1..314 | 804 | 45.3 | Plus |