Clone Sequence Records
BS08692.3prime Sequence
886 bp (775 high quality bases) assembled on 2006-01-11
> BS08692.3prime
ATGGTCTAGAAAGCTTTTAGGACAAGGGTATGGCTTCCACTTGTCGCCGG
GCGGATAGGATAACATCGTTGATGCCCACGCCATCGTATGCAGCTCCACA
GACAGACAGTGGCAGTTTGTAGGTCTTGATGTAGTTCCGAATGGCTTCAA
CGCGCCGCTTGTGGCCCACAGTGTACTGCGGGATGCACTTGTGCAGCGTG
TGCACTCGACTGAATTTGGGTTCCTCGCGTATCTGCAGCATTTTCTGCAC
ATGGCTGGTGGCTAAGTCAAGAATCTGCTTGGGGCTTGGACGATCACCGA
ACCACTGGTCGAACCAATGGCCACCCATCATCACGGTAAGCACAGTGTTC
TCGCCCATGTCGAAGCAGCAGCTGTCGAAGATGACGCCGAGCAGAGGTAA
CTTTTCCACTGGCGGCACTAGCAATCCAAAGCCGTCTTGTTTGAGTAGCT
TGCCGGGGAACTGCATGTTCACTACCAGCACATCCACGTACGGAATGCTC
AAAAGTTGGGCGCTCAGCGAGGGATGCTGCTGCTTTACCAGGGGCGCGAG
TTTGTAGGCGGGCAGGGAGCTGACCACATGCTCCACCGGAACTTCGGCAT
CCTTGATGTTCATTCGAACCCCGGAGCTGCTGAAGGTCAGGTTCCGGCAT
TCGTTGCTTAGCTGCACGTTCACATCCCGCTCACCTAAGTACTTTCGCAT
AGTTTTGGGTAGGTTCTCCAGACCGCCTTTCAGCCCGTACATGGCCCACT
TCTCCTTTACCGCCTGCGCATACAGCTTGGGCTGTCTTTCGGCAAATAGT
CCATCCTTGGTGTCCTTGGTCTTGTTCTTCTCAAAGCGGGAAATGAGTGT
GCCCTTGAGCACTCCTCCGTACTTCTGTTCCTTTTC
BS08692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5796-PA | 1428 | Ppox-RA | 559..1428 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 685..1555 | 886..16 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660297..24661167 | 16..886 | 4355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 17:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 1145..1186 | 246..205 | 111 | 73.8 | Minus |
BS08692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:38 Download gff for
BS08692.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-PA | 559..1428 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:34 Download gff for
BS08692.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5796-PA | 559..1428 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:44 Download gff for
BS08692.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 685..1555 | 16..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:24 Download gff for
BS08692.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 685..1555 | 16..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:24 Download gff for
BS08692.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660297..24661167 | 16..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:44 Download gff for
BS08692.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486019..20486889 | 16..886 | 100 | | Plus |
BS08692.5prime Sequence
933 bp (814 high quality bases) assembled on 2006-01-11
> BS08692.5prime
GAAGTTATCAGTCGACATGACGACGGCCGTGCTGGGAGGCGGATTGAGTG
GACTATCCGCCGGATACTACCTGTTGCGGCGATTCGGGAAGCCGCTGACC
ATCTACGAGGCCTCGCCCCGTGTGGGCGGATGGGTGCGGTCGGAGAATCG
CAAGGATCGCAACTTCATCTTCGAGAGCGGACCGCGAACCATACGCCCAG
TTGGTGAGCCAGGTGCCAATACGCTAGAATTGGTGGAGGATCTGAAGCTG
GAGGTGACTCCCATTCGACGCAGTCATGTCGCAGCACGCAACCGAATGCT
GTATGCCAAGGGACAGCTCTGCATGCTGCCCAACAGTCCCAAGGGTCTCT
TCGGCGTCCTGCCTCCCTTCACGAAGCCGCTATACAAAGCGGTTCTTCGC
GATCTGTTCACAGCAAGCAAGAAAGCGAAGCTGGAGGATGAGAGCATCTA
CAGTTTCGCTGAGCGGCGGTTTGGTAAGGAGATAGCCGACTACGCCATCA
GTCCCATGATCTGCGGTATTTGCGCCGGTGACGCGCGAGAAATAAGTGTG
CGCTTCCTGATGGAGGGGCTCTTTGAAAAGGAACAGAAGTACGGAGGAGT
GCTCAAGGGCACACTCATTTCCCGCTTTGAGAAGAACAAGACCAAGGACA
CCAAGGATGGACTATTTGCCGAAAGACAGCCCAAGCTGTATGCGCAGGCG
GTAAAGGAGAAGTGGGCCATGTACGGGCTGAAAGGCGGTCTGGAGAACCT
ACCCAAAACTATGCGAAAGTACTTAGGTGAGCGGGATGTGAACGTGCAGC
TAAGCAACGAATGCCGGAACCTGACCTTCAGCAGCTCCGGGGTTCGAATG
AACATCAAGGATGCCGAAGTTCCGGTGGAGCATGTGGTCAGCTCCCTGCC
CGCCTACAAACTCGCGCCCCTGGGTAAGCAGCA
BS08692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5796-PA | 1428 | Ppox-RA | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 126..1043 | 16..933 | 4560 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660809..24661726 | 933..16 | 4560 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:47:22 has no hits.
BS08692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:39 Download gff for
BS08692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:35 Download gff for
BS08692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5796-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:51:06 Download gff for
BS08692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1042 | 10..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:59 Download gff for
BS08692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1042 | 10..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:59 Download gff for
BS08692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660810..24661731 | 10..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:51:06 Download gff for
BS08692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486532..20487453 | 10..932 | 99 | | Minus |
BS08692.complete Sequence
1460 bp (1460 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636238
> BS08692.complete
GAAGTTATCAGTCGACATGACGACGGCCGTGCTGGGAGGCGGATTGAGTG
GACTATCCGCCGGATACTACCTGTTGCGGCGATTCGGGAAGCCGCTGACC
ATCTACGAGGCCTCGCCCCGTGTGGGCGGATGGGTGCGGTCGGAGAATCG
CAAGGATCGCAACTTCATCTTCGAGAGCGGACCGCGAACCATACGCCCAG
TTGGTGAGCCAGGTGCCAATACGCTAGAATTGGTGGAGGATCTGAAGCTG
GAGGTGACTCCCATTCGACGCAGTCATGTCGCAGCACGCAACCGAATGCT
GTATGCCAAGGGACAGCTCTGCATGCTGCCCAACAGTCCCAAGGGTCTCT
TCGGCGTCCTGCCTCCCTTCACGAAGCCGCTATACAAAGCGGTTCTTCGC
GATCTGTTCACAGCAAGCAAGAAAGCGAAGCTGGAGGATGAGAGCATCTA
CAGTTTCGCTGAGCGGCGGTTTGGTAAGGAGATAGCCGACTACGCCATCA
GTCCCATGATCTGCGGTATTTGCGCCGGTGACGCGCGAGAAATAAGTGTG
CGCTTCCTGATGGAGGGGCTCTTTGAAAAGGAACAGAAGTACGGAGGAGT
GCTCAAGGGCACACTCATTTCCCGCTTTGAGAAGAACAAGACCAAGGACA
CCAAGGATGGACTATTTGCCGAAAGACAGCCCAAGCTGTATGCGCAGGCG
GTAAAGGAGAAGTGGGCCATGTACGGGCTGAAAGGCGGTCTGGAGAACCT
ACCCAAAACTATGCGAAAGTACTTAGGTGAGCGGGATGTGAACGTGCAGC
TAAGCAACGAATGCCGGAACCTGACCTTCAGCAGCTCCGGGGTTCGAATG
AACATCAAGGATGCCGAAGTTCCGGTGGAGCATGTGGTCAGCTCCCTGCC
CGCCTACAAACTCGCGCCCCTGGTAAAGCAGCAGCATCCCTCGCTGAGCG
CCCAACTTTTGAGCATTCCGTACGTGGATGTGCTGGTAGTGAACATGCAG
TTCCCCGGCAAGCTACTCAAACAAGACGGCTTTGGATTGCTAGTGCCGCC
AGTGGAAAAGTTACCTCTGCTCGGCGTCATCTTCGACAGCTGCTGCTTCG
ACATGGGCGAGAACACTGTGCTTACCGTGATGATGGGTGGCCATTGGTTC
GACCAGTGGTTCGGTGATCGTCCAAGCCCCAAGCAGATTCTTGACTTAGC
CACCAGCCATGTGCAGAAAATGCTGCAGATACGCGAGGAACCCAAATTCA
GTCGAGTGCACACGCTGCACAAGTGCATCCCGCAGTACACTGTGGGCCAC
AAGCGGCGCGTTGAAGCCATTCGGAACTACATCAAGACCTACAAACTGCC
ACTGTCTGTCTGTGGAGCTGCATACGATGGCGTGGGCATCAACGATGTTA
TCCTATCCGCCCGGCGACAAGTGGAAGCCATACCCTTGTCCTAAAAGCTT
TCTAGACCAT
BS08692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1428 | CG5796-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 126..1555 | 16..1445 | 7150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660297..24661726 | 1445..16 | 7150 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 1145..1186 | 1215..1256 | 111 | 73.8 | Plus |
BS08692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:00 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 1..1428 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:36 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1555 | 10..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:09 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 127..1552 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:00 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1555 | 10..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:59 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 127..1552 | 17..1442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:59 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660300..24661725 | 17..1442 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:09 Download gff for
BS08692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486022..20487447 | 17..1442 | 100 | | Minus |
BS08692.pep Sequence
Translation from 16 to 1443
> BS08692.pep
MTTAVLGGGLSGLSAGYYLLRRFGKPLTIYEASPRVGGWVRSENRKDRNF
IFESGPRTIRPVGEPGANTLELVEDLKLEVTPIRRSHVAARNRMLYAKGQ
LCMLPNSPKGLFGVLPPFTKPLYKAVLRDLFTASKKAKLEDESIYSFAER
RFGKEIADYAISPMICGICAGDAREISVRFLMEGLFEKEQKYGGVLKGTL
ISRFEKNKTKDTKDGLFAERQPKLYAQAVKEKWAMYGLKGGLENLPKTMR
KYLGERDVNVQLSNECRNLTFSSSGVRMNIKDAEVPVEHVVSSLPAYKLA
PLVKQQHPSLSAQLLSIPYVDVLVVNMQFPGKLLKQDGFGLLVPPVEKLP
LLGVIFDSCCFDMGENTVLTVMMGGHWFDQWFGDRPSPKQILDLATSHVQ
KMLQIREEPKFSRVHTLHKCIPQYTVGHKRRVEAIRNYIKTYKLPLSVCG
AAYDGVGINDVILSARRQVEAIPLS*
BS08692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-PA | 475 | CG5796-PA | 1..475 | 1..475 | 2469 | 100 | Plus |
