Clone Sequence Records
BS08694.3prime Sequence
921 bp (766 high quality bases) assembled on 2006-01-11
> BS08694.3prime
ATGGTCTAGAAAGCTTTCAATTTCGCTTCTTGCGATTGGCAGCAATGGAA
GCGGATGAGCTGTTGCCCGTATCCGGGGTCTCGCTAATGGACAGACCCGT
GTCCAGCCGACTCTTGTCAACCGGATACAGCCAGCGCTGATACAGATAGA
TAATAAACACAATATCATCGCGCAGGCAGGCCACCCGATGGGCCGTGGGC
ATGGTGATGATGAAGGCGAAGAAGTCGTCGATGAAGGTATTAAATGCTTT
ATACATAAATGCGCGCCACGGCAATGCGGCCACAGACTTCAGCTTGTAGT
TTACAAACAGTTGCGGCAACATGAACAGGAAACCGAAGGCGTAAACTCCG
TTCACCAGTGAGTTAAGTGTCCATGAGTACCAGGAGCGGTGTGGTTGGTA
GAGGAGCGAATAGACCGCTCCGCATATACAAAGCGGATACAGCAGATAGC
TCAGATATCGCATGCCCTGTCTGTCAAACTGATCAGTCTTCTGCTCCTCC
GCCAGCTGACCTGACTTCACGCCAGCTTGGTCACCATTCCGCCGGTCAAC
TTGCTCCAGCTTGCGACGAACCAGGCCACTGAAGCTAAGCTCCAGACGGA
AGATTTTCTTGCACTTCCACAGCTCAATGAGCGTGCCCAGGCCAACTGGC
ACAAGTACCAGATACGACGTATTCTCATCTAGCAGATAAAAAAAGATCAC
GATCTGCGAAAACGCTCGCCACATTGTGGTGCGGCTTGATAGCCCCTCGT
ACGACTGCTTTTTGCGCCAAAAGGCCACGTCGTTCTTAAAGCTTAAAAAG
TCGAAGAGCATATGGATGCTGGACACAAAGATGGTGCCACACAAAAGGTA
TACATTGGTGTCCGAAAAGATGCCTTTCACCTCGTCAATATCCTTGGTAG
CAAATCCATGGTGAGCAGCGC
BS08694.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 1689 | CG4332-RA | 798..1689 | 908..17 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 842..1747 | 921..17 | 4505 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13156069..13156863 | 811..17 | 3975 | 100 | Minus |
| X | 23542271 | X | 13155879..13155989 | 921..812 | 505 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-01 06:59:21 has no hits.
BS08694.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:40 Download gff for
BS08694.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 784..1689 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:37 Download gff for
BS08694.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 784..1689 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:30 Download gff for
BS08694.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 842..1751 | 12..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:54 Download gff for
BS08694.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 842..1751 | 12..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:54 Download gff for
BS08694.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13155879..13155989 | 812..921 | 99 | -> | Minus |
| X | 13156069..13156867 | 12..811 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:30 Download gff for
BS08694.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049912..13050022 | 812..921 | 99 | -> | Minus |
| arm_X | 13050102..13050900 | 12..811 | 99 | | Minus |
BS08694.5prime Sequence
885 bp (795 high quality bases) assembled on 2006-01-11
> BS08694.5prime
GAAGTTATCAGTCGACATGGCCCTGCCCTCGATCTCCACGCTTCTAGGCG
TTGCATTTCTGGCGTACATCGGCCACTCCATCTACCAGATGTCGCAGCTC
TTCACTACGCTGCAATGCAGCGGTGTGCCGTGCTACACATCATTCCTGGC
GGACAGGCCACGCCTGCAACTGGCATTGTTTTCCTCCCTCAGCAGAAGTC
CCATTGCCACCGAGGTGCGGGATCTGTACAAGGCCAAGAGGTTCGACTAT
GATCAAAACTTTGAGCACGACTTCGAAGTGGATGTGCCGCTGAGGACGCG
CCGGAATGGCTCCCTGTATCTTCATGTGGTCTTGGCCTTGGAGGGTGAGC
CACTGGAATGGCGTAGCCTGCGCAGAGATGGGCCCACCGTTGTCCATACG
ATGAGTCTCACGGATTACATAGTGCCGCGGGCGGAGGCCTTTAAACTGCT
TGGAGATTCCGAGAAAGGTGCAGCAGCCGCTGTCCAGGAGAAAGAAAAGA
AGAAAGCCTCCACCACTGGACGTCCCAGCACCCACATCCGATCGAATGTT
TACGTCACCCTGCTCAACGATCTCTATTCCGTTTCGCAAGCGGATGTCCC
ACCTGAAATGGCCCCCTTGATACGTGTCAATCGCAATCAACAGATCTTGC
CCATCCTGCAGACTGATACATTTAATACGCGGCTAAAGGATCTAGTGCCC
GTCACCCGCAATACCACCGAATTCACATTCAGCTTCCACTACAAGCCCGT
GGGCGTGGGCAAGCTCCGTCTAATGCTGCTCATGGAACACGCCACCCAGG
CGCTGCTCACCATTGGATTTGCTACCAAGGATATTGACGAGGTGAAAGGC
ATCTTTTCGGACACCAATGTATACCTTTTGTGTGG
BS08694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 1689 | CG4332-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 56..927 | 14..885 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13155093..13155964 | 14..885 | 4360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:16:54 has no hits.
BS08694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:41 Download gff for
BS08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:38 Download gff for
BS08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:25 Download gff for
BS08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 54..927 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:37 Download gff for
BS08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 54..927 | 10..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:37 Download gff for
BS08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13155091..13155964 | 10..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:25 Download gff for
BS08694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049124..13049997 | 10..885 | 99 | | Plus |
BS08694.complete Sequence
1721 bp assembled on 2007-10-17
GenBank Submission: FJ638815
> BS08694.complete
GAAGTTATCAGTCGACATGGCCCTGCCCTCGATCTCCACGCTTCTAGGCG
TTGCATTTCTGGCGTACATCGGCCACTCCATCTACCAGATGTCGCAGCTC
TTCACTACGCTGCAATGCAGCGGTGTGCCGTGCTACACATCATTCCTGGC
GGACAGGCCACGCCTGCAACTGGCATTGTTTTCCTCCCTCAGCAGAAGTC
CCATTGCCACCGAGGTGCGGGATCTGTACAAGGCCAAGAGGTTCGACTAT
GATCAAAACTTTGAGCACGACTTCGAAGTGGATGTGCCGCTGAGGACGCG
CCGGAATGGCTCCCTGTATCTTCATGTGGTCTTGGCCTTGGAGGGTGAGC
CACTGGAATGGCGTAGCCTGCGCAGAGATGGGCCCACCGTTGTCCATACG
ATGAGTCTCACGGATTACATAGTGCCGCGGGCGGAGGCCTTTAAACTGCT
TGGAGATTCCGAGAAAGGTGCAGCAGCCGCTGTCCAGGAGAAAGAAAAGA
AGAAAGCCTCCACCACTGGACGTCCCAGCACCCACATCCGATCGAATGTT
TACGTCACCCTGCTCAACGATCTCTATTCCGTTTCGCAAGCGGATGTCCC
ACCTGAAATGGCCCCCTTGATACGTGTCAATCGCAATCAACAGATCTTGC
CCATCCTGCAGACTGATACATTTAATACGCGGCTAAAGGATCTAGTGCCC
GTCACCCGCAATACCACCGAATTCACATTCAGCTTCCACTACAAGCCCGT
GGGCGTGGGCAAGCTCCGTCTAATGCTGCTCATGGAACACGCCACCCAGG
CGCTGCTCACCATTGGATTTGCTACCAAGGATATTGACGAGGTGAAAGGC
ATCTTTTCGGACACCAATGTATACCTTTTGTGTGGCACCATCTTTGTGTC
CAGCATCCATATGCTCTTCGACTTTTTAAGCTTTAAGAACGACGTGGCCT
TTTGGCGCAAAAAGCAGTCGTACGAGGGGCTATCAAGCCGCACCACAATG
TGGCGAGCGTTTTCGCAGATCGTGATCTTTTTTTATCTGCTAGATGAGAA
TACGTCGTATCTGGTACTTGTGCCAGTTGGCCTGGGCACGCTCATTGAGC
TGTGGAAGTGCAAGAAAATCTTCCGTCTGGAGCTTAGCTTCAGTGGCCTG
GTTCGTCGCAAGCTGGAGCAAGTTGACCGGCGGAATGGTGACCAAGCTGG
CGTGAAGTCAGGTCAGCTGGCGGAGGAGCAGAAGACTGATCAGTTTGACA
GACAGGGCATGCGATATCTGAGCTATCTGCTGTATCCGCTTTGTATATGC
GGAGCGGTCTATTCGCTCCTCTACCAACCACACCGCTCCTGGTACTCATG
GACACTTAACTCACTGGTGAACGGAGTTTACGCCTTCGGTTTCCTGTTCA
TGTTGCCGCAACTGTTTGTAAACTACAAGCTGAAGTCTGTGGCCGCATTG
CCGTGGCGCGCATTTATGTATAAAGCATTTAATACCTTCATCGACGACTT
CTTCGCCTTCATCATCACCATGCCCACGGCCCATCGGGTGGCCTGCCTGC
GCGATGATATTGTGTTTATTATCTATCTGTATCAGCGCTGGCTGTATCCG
GTTGACAAGAGTCGGCTGGACACGGGTCTGTCCATTAGCGAGACCCCGGA
TACGGGCAACAGCTCATCCGCTTCCATTGCTGCCAATCGCAAGAAGCGAA
ATTGAAAGCTTTCTAGACCAT
BS08694.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 1689 | CG4332-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 56..1747 | 14..1705 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13155093..13155989 | 14..910 | 4485 | 100 | Plus |
| X | 23542271 | X | 13156069..13156863 | 911..1705 | 3975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:15:31 has no hits.
BS08694.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:42 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 1..1689 | 17..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:36 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 52..1749 | 10..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:08 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 59..1746 | 17..1704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:46 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 57..1744 | 17..1704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:07 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 59..1746 | 17..1704 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:07 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13155096..13155989 | 17..910 | 100 | -> | Plus |
| X | 13156069..13156862 | 911..1704 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:08 Download gff for
BS08694.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049129..13050022 | 17..910 | 100 | -> | Plus |
| arm_X | 13050102..13050895 | 911..1704 | 100 | | Plus |
BS08694.pep Sequence
Translation from 16 to 1704
> BS08694.pep
MALPSISTLLGVAFLAYIGHSIYQMSQLFTTLQCSGVPCYTSFLADRPRL
QLALFSSLSRSPIATEVRDLYKAKRFDYDQNFEHDFEVDVPLRTRRNGSL
YLHVVLALEGEPLEWRSLRRDGPTVVHTMSLTDYIVPRAEAFKLLGDSEK
GAAAAVQEKEKKKASTTGRPSTHIRSNVYVTLLNDLYSVSQADVPPEMAP
LIRVNRNQQILPILQTDTFNTRLKDLVPVTRNTTEFTFSFHYKPVGVGKL
RLMLLMEHATQALLTIGFATKDIDEVKGIFSDTNVYLLCGTIFVSSIHML
FDFLSFKNDVAFWRKKQSYEGLSSRTTMWRAFSQIVIFFYLLDENTSYLV
LVPVGLGTLIELWKCKKIFRLELSFSGLVRRKLEQVDRRNGDQAGVKSGQ
LAEEQKTDQFDRQGMRYLSYLLYPLCICGAVYSLLYQPHRSWYSWTLNSL
VNGVYAFGFLFMLPQLFVNYKLKSVAALPWRAFMYKAFNTFIDDFFAFII
TMPTAHRVACLRDDIVFIIYLYQRWLYPVDKSRLDTGLSISETPDTGNSS
SASIAANRKKRN*
BS08694.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 562 | CG4332-PA | 1..562 | 1..562 | 2908 | 100 | Plus |
| CG3702-PB | 641 | CG3702-PB | 141..596 | 79..535 | 662 | 31.6 | Plus |
| CG3702-PA | 641 | CG3702-PA | 141..596 | 79..535 | 662 | 31.6 | Plus |
