Clone Sequence Records
BS08703.3prime Sequence
851 bp (849 high quality bases) assembled on 2006-01-11
> BS08703.3prime
ATGGTCTAGAAAGCTTTCAGAATATAGCCAGCACCCCCGTCCACTTAAGG
AGGTAGTAGAAGAACAGTCCCACAATCACCGTCTTGCACACAACGTCTAC
GACTCGTTGGATCTTCATGTGCACGCGCGCAGTGGGCAGATCCTCCTCCT
TTTCCTTGAGGATAAACTTTCGAGCGCCCTTAGCACACTCAATCATGTAC
TCCTCCTCGGTGTTCTCCGTGTTCATGTTCATGTTAAAAATCGCCTTGTC
TTCCTCGTTGAGTTTGTTCCAGAGGGAGGCGTAGTTATCAGATCGGAAGC
ACCAGGCATTGAGGGTAAAGAACTGGAGGACGCCCAGACCTGTGGATATC
TTCTCCTGAACTCTCAACATGAATCGCTTCTGACCTAATATCAGCATCAG
GAAGTCCAGGAAGTAAGCGGGCAACCAATGAAACAGAGCCACGTTGAAGT
TGTGGTATAATTGGTTGGTGGTAACGCAAGGGTCCGGGTACCATAGACCC
GCGTTAAATGGGAACTGCTTGTTGATGCGTTTGCTCATCTCCACAACGGT
GCCCATGGTCATCTTCCTGTGGTCCGCATTGGTTATATTATAAACGGGCA
CATTGGTAGGCCGCTTGGCCTGCTTGTTGAACTCGTAGGGAATGACGATC
AGCCCGTTGATAGCGTAGTCGACGGGAATCACCTCGGCCTTGTTCTGCTG
ATTCACCAGAACGGACCGGATCACGCCCTTGCCGCATCCGATCATCAGGC
CAGTCGGTCCATTCAGGTTGTCCACCCATCCGGGCAACGGCTCGTANGCA
GCCGGCGACACGATGCTGGGACGTGCGATGATGACGGGCATGGACTCGTA
G
BS08703.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PB | 1500 | CG30427-RB | 666..1500 | 851..17 | 4156 | 99.8 | Minus |
| CG30427-PA | 1500 | CG30427-RA | 666..728 | 851..789 | 246 | 95.2 | Minus |
| CG30427-PD | 1500 | CG30427-RD | 666..728 | 851..789 | 246 | 95.2 | Minus |
| CG30427-PC | 1521 | CG30427-RC | 666..707 | 851..810 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 777..1611 | 851..17 | 4164 | 99.9 | Minus |
| CG30427-RE | 2870 | CG30427-RE | 844..1678 | 851..17 | 4164 | 99.9 | Minus |
| CG30427-RB | 1806 | CG30427-RB | 844..1678 | 851..17 | 4164 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24930723..24931162 | 372..811 | 2189 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24930532..24930663 | 240..371 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 24930345..24930473 | 111..239 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 24930195..24930288 | 17..110 | 470 | 100 | Plus |
| 2R | 25286936 | 2R | 24934058..24934098 | 811..851 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:05:33 has no hits.
BS08703.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:48 Download gff for
BS08703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 666..1500 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:48 Download gff for
BS08703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 666..1500 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:56:41 Download gff for
BS08703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 844..1682 | 12..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:13 Download gff for
BS08703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 844..1682 | 12..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:13 Download gff for
BS08703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24930191..24930288 | 12..110 | 96 | <- | Plus |
| 2R | 24930345..24930473 | 111..239 | 100 | <- | Plus |
| 2R | 24930532..24930663 | 240..371 | 100 | <- | Plus |
| 2R | 24930723..24931161 | 372..810 | 99 | <- | Plus |
| 2R | 24934058..24934098 | 811..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:56:41 Download gff for
BS08703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20817714..20817811 | 12..110 | 96 | <- | Plus |
| arm_2R | 20817868..20817996 | 111..239 | 100 | <- | Plus |
| arm_2R | 20818055..20818186 | 240..371 | 100 | <- | Plus |
| arm_2R | 20818246..20818684 | 372..810 | 99 | <- | Plus |
| arm_2R | 20821581..20821621 | 811..851 | 100 | | Plus |
BS08703.5prime Sequence
898 bp (835 high quality bases) assembled on 2006-01-11
> BS08703.5prime
GAAGTTATCAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACT
ATAAGGATAAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAG
GTTCTGCTGGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGAT
CATCATCTGCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGG
AGATGTTCAAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAG
ATGCTCAAGAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCT
CGGGCTCAGCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTG
TTTTCCACATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCC
ATCGATATGAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGA
AATGAAGCAGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACT
GCGACCAGGATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCG
GAGGATCTTATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGC
CATTACGCCGGATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAA
AGCGTCTGGCGGAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTC
ATCATCGCACGTCCCAGCATCGTGTCGCCGGCTGCCTACGAGCCGTTGCC
CGGATGGGTGGACAACCTGAATGGACCGACTGGCCTGATGATCGGATGCG
GCAAGGGCGTGATCCGGTCCGTTCTGGTGAATCAGCAGAAACAGGCCGAG
GTGATTCCCGTCGACTACGCTATCAACGGGCTGATCGTCATTCCCTAC
BS08703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PB | 1500 | CG30427-RB | 1..882 | 17..898 | 4360 | 99.7 | Plus |
| CG30427-PA | 1500 | CG30427-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
| CG30427-PD | 1500 | CG30427-RD | 1..714 | 17..730 | 3570 | 100 | Plus |
| CG30427-PC | 1521 | CG30427-RC | 1..707 | 17..723 | 3535 | 100 | Plus |
| CG17562-PA | 1500 | CG17562-RA | 413..444 | 441..472 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..993 | 17..898 | 4380 | 99.8 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..1060 | 17..898 | 4380 | 99.8 | Plus |
| CG30427-RB | 1806 | CG30427-RB | 179..1060 | 17..898 | 4380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24934058..24934483 | 722..297 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 296..17 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24930986..24931162 | 898..722 | 855 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:15:49 has no hits.
BS08703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:49 Download gff for
BS08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:49 Download gff for
BS08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:17 Download gff for
BS08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 173..1060 | 10..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:12 Download gff for
BS08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 173..1060 | 10..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:12 Download gff for
BS08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24934552..24934835 | 11..296 | 98 | <- | Minus |
| 2R | 24930986..24931161 | 723..898 | 98 | <- | Minus |
| 2R | 24934058..24934483 | 297..722 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:17 Download gff for
BS08703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20818509..20818684 | 723..898 | 98 | <- | Minus |
| arm_2R | 20821581..20822006 | 297..722 | 100 | <- | Minus |
| arm_2R | 20822075..20822358 | 11..296 | 98 | <- | Minus |
BS08703.complete Sequence
1532 bp (1532 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636239
> BS08703.complete
GAAGTTATCAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACT
ATAAGGATAAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAG
GTTCTGCTGGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGAT
CATCATCTGCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGG
AGATGTTCAAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAG
ATGCTCAAGAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCT
CGGGCTCAGCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTG
TTTTCCACATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCC
ATCGATATGAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGA
AATGAAGCAGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACT
GCGACCAGGATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCG
GAGGATCTTATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGC
CATTACGCCGGATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAA
AGCGTCTGGCGGAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTC
ATCATCGCACGTCCCAGCATCGTGTCGCCGGCTGCCTACGAGCCGTTGCC
CGGATGGGTGGACAACCTGAATGGACCGACTGGCCTGATGATCGGATGCG
GCAAGGGCGTGATCCGGTCCGTTCTGGTGAATCAGCAGAACAAGGCCGAG
GTGATTCCCGTCGACTACGCTATCAACGGGCTGATCGTCATTCCCTACGA
GTTCAACAAGCAGGCCAAGCGGCCTACCAATGTGCCCGTTTATAATATAA
CCAATGCGGACCACAGGAAGATGACCATGGGCACCGTTGTGGAGATGAGC
AAACGCATCAACAAGCAGTTCCCATTTAACGCGGGTCTATGGTACCCGGA
CCCTTGCGTTACCACCAACCAATTATACCACAACTTCAACGTGGCTCTGT
TTCATTGGTTGCCCGCTTACTTCCTGGACTTCCTGATGCTGATATTAGGT
CAGAAGCGATTCATGTTGAGAGTTCAGGAGAAGATATCCACAGGTCTGGG
CGTCCTCCAGTTCTTTACCCTCAATGCCTGGTGCTTCCGATCTGATAACT
ACGCCTCCCTCTGGAACAAACTCAACGAGGAAGACAAGGCGATTTTTAAC
ATGAACATGAACACGGAGAACACCGAGGAGGAGTACATGATTGAGTGTGC
TAAGGGCGCTCGAAAGTTTATCCTCAAGGAAAAGGAGGAGGATCTGCCCA
CTGCGCGCGTGCACATGAAGATCCAACGAGTCGTAGACGTTGTGTGCAAG
ACGGTGATTGTGGGACTGTTCTTCTACTACCTCCTTAAGTGGACGGGGGT
GCTGGCTATATTCTGAAAGCTTTCTAGACCAT
BS08703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1500 | CG30427-PF | 1..1500 | 17..1516 | 7500 | 100 | Plus |
| CG30427-RE | 1500 | CG30427-PE | 1..1500 | 17..1516 | 7500 | 100 | Plus |
| CG30427-RB | 1500 | CG30427-PB | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..1611 | 17..1516 | 7500 | 100 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..1678 | 17..1516 | 7500 | 100 | Plus |
| CG30427-RB | 1806 | CG30427-RB | 179..1678 | 17..1516 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24930723..24931162 | 1161..722 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 24934058..24934483 | 722..297 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 296..17 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24930532..24930663 | 1293..1162 | 660 | 100 | Minus |
| 2R | 25286936 | 2R | 24930345..24930473 | 1422..1294 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 24930195..24930288 | 1516..1423 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:39:50 has no hits.
BS08703.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:01 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 1..1500 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:38 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 148..1657 | 10..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:54 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 179..1677 | 17..1515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:01 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 148..1657 | 10..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:28 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 179..1677 | 17..1515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:28 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24930196..24930288 | 1423..1515 | 100 | <- | Minus |
| 2R | 24930345..24930473 | 1294..1422 | 100 | <- | Minus |
| 2R | 24930532..24930663 | 1162..1293 | 100 | <- | Minus |
| 2R | 24930723..24931161 | 723..1161 | 100 | <- | Minus |
| 2R | 24934058..24934483 | 297..722 | 100 | <- | Minus |
| 2R | 24934552..24934831 | 17..296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:54 Download gff for
BS08703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20817719..20817811 | 1423..1515 | 100 | <- | Minus |
| arm_2R | 20817868..20817996 | 1294..1422 | 100 | <- | Minus |
| arm_2R | 20818055..20818186 | 1162..1293 | 100 | <- | Minus |
| arm_2R | 20818246..20818684 | 723..1161 | 100 | <- | Minus |
| arm_2R | 20821581..20822006 | 297..722 | 100 | <- | Minus |
| arm_2R | 20822075..20822354 | 17..296 | 100 | | Minus |
BS08703.pep Sequence
Translation from 16 to 1515
> BS08703.pep
MTVDLSPVQEYYKDKTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRP
KRGKAPETRLEEMFKLPIFQRIKDERPEMLKRVTIYQGDVTFDQLGLSGE
SLKHVTENTNIVFHMAATLKLEGNLRDAIDMNLLGTRRALNVAKEMKQLE
AFIHLSTAFCNCDQDVMYEKVYEFPHKPEDLMRLAEWMDVKTLDAITPDL
LKPHPNTYTYSKRLAELLVRDHYESMPVIIARPSIVSPAAYEPLPGWVDN
LNGPTGLMIGCGKGVIRSVLVNQQNKAEVIPVDYAINGLIVIPYEFNKQA
KRPTNVPVYNITNADHRKMTMGTVVEMSKRINKQFPFNAGLWYPDPCVTT
NQLYHNFNVALFHWLPAYFLDFLMLILGQKRFMLRVQEKISTGLGVLQFF
TLNAWCFRSDNYASLWNKLNEEDKAIFNMNMNTENTEEEYMIECAKGARK
FILKEKEEDLPTARVHMKIQRVVDVVCKTVIVGLFFYYLLKWTGVLAIF*
BS08703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PF | 499 | CG30427-PF | 1..499 | 1..499 | 2630 | 100 | Plus |
| CG30427-PE | 499 | CG30427-PE | 1..499 | 1..499 | 2630 | 100 | Plus |
| CG30427-PB | 499 | CG30427-PB | 1..499 | 1..499 | 2630 | 100 | Plus |
| CG30427-PD | 499 | CG30427-PD | 1..488 | 1..488 | 2106 | 80.1 | Plus |
| CG30427-PA | 499 | CG30427-PA | 1..488 | 1..488 | 2106 | 80.1 | Plus |
