Clone BS08704 Report

Search the DGRC for BS08704

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptmetl-RB
Protein status:BS08704.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08704.3prime Sequence

927 bp (806 high quality bases) assembled on 2006-01-11

> BS08704.3prime
ATGGTCTAGAAAGCTTTTAAAGCGGTTTCCTGAACTTTGTCTGAATCCAC
ACGCGGTACATTTTCAAGCCGCGACAGCGATTAACTTGCAGTCTTCGGTC
CACAATGAGCTGCTCCTCCTGCAGCCCCGCTTGAGTCATCATACCCCGCA
GTTCTTCCTCCGTGAAGAAGTACACCATGGTGCCGTCGCCTCGCACGTAG
AAGTTGTCCTCCATACACTTGCCGCTCTTGAAGCGCAGCTGTGCCAGGTC
GTATCGTCCGTAGTCGCGGAAGAGGAGCAAGCCACCGGGACGCAGGTAGC
GATAGCAATTGTCCAATACCCGCTGCATTTTCTTTGGCTCAATTGCGGAC
AGCACAAAAATCATCACAATAATGTCCTGTGAGTTTTCCTCGAAGGGCAC
CTGCCAATGATCCAGCGTGGCATCCATGACAAACACCTCGCAGCGCTTCT
CGTCGAACTGCCGTTGGCTTCGCAGGATTTCAATGGCCCGGGCGGAGAAG
TCACATCCGAAAACCTTGAGCTGCGGTTCAGAGCTGTACTGTAGAAGGGG
TAAAATTGTGTTTCCTACTCCACAGCCCAGTTCGAAAATGCTACGTGGTT
GCAGTACCGCCGAATCCGCCGCCAGAGGAGCTAGTTCGGGGAACTCCGTA
AACAGCCAGTGGCGATCCTTGAAGAAGCGGTTGTCGTGAATGCCGTAGAA
GGAATCCCAAAACTTGGGGGCGTCTGTCTGAAATCGCTCCTTCTGCTCCG
CTTCCATCTTTGAGGTCGAATTCTTGGCTACAGCCGCCTTCGCGGCCAGT
TCCTGCTCTTCATCCCATTGCACGTGGTCCCAGGCGTTAAACTCGAACAC
CTCTCGCGCGTCGGTGAGCACCCGGCTGCCCGCTCCCGACGGTTTTTTAC
GCTGGCGAGTGTGTTCCCAACTTTTGC

BS08704.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13929-PB 978 metl-RB 68..978 927..17 4555 100 Minus
CG13929-PA 909 metl-RA 94..909 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 1240 CG13929-RB 231..1142 927..16 4560 100 Minus
metl-RA 1107 CG13929-RA 193..1009 832..16 4085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1638040..1638855 16..831 4080 100 Plus
3L 28110227 3L 1638908..1639005 830..927 490 100 Plus
Blast to na_te.dros performed on 2015-02-01 06:56:02 has no hits.

BS08704.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:50 Download gff for BS08704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 68..978 17..927 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:51 Download gff for BS08704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 68..978 17..927 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:56 Download gff for BS08704.3prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 231..1142 16..927 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:22 Download gff for BS08704.3prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 231..1142 16..927 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:22 Download gff for BS08704.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1638040..1638854 16..830 100 <- Plus
3L 1638909..1639005 831..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:56 Download gff for BS08704.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1638040..1638854 16..830 100 <- Plus
arm_3L 1638909..1639005 831..927 100   Plus

BS08704.5prime Sequence

955 bp (749 high quality bases) assembled on 2006-01-11

> BS08704.5prime
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCA
GCTCATTGTGGACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAAT
GTACC

BS08704.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13929-PB 978 metl-RB 1..933 17..949 4665 100 Plus
CG13929-PA 909 metl-RA 94..864 179..949 3855 100 Plus
CG13929-PA 909 metl-RA 65..96 17..48 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 1240 CG13929-RB 164..1103 17..955 4675 99.9 Plus
metl-RA 1107 CG13929-RA 193..970 179..955 3865 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1638086..1638855 949..180 3850 100 Minus
3L 28110227 3L 1638908..1639072 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:38:56 has no hits.

BS08704.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:52 Download gff for BS08704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 1..940 17..955 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:52 Download gff for BS08704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 1..940 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:38 Download gff for BS08704.5prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 158..1103 8..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:40 Download gff for BS08704.5prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 158..1103 8..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:40 Download gff for BS08704.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1638079..1638854 181..955 99 <- Minus
3L 1638909..1639078 8..180 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:38 Download gff for BS08704.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1638079..1638854 181..955 99 <- Minus
arm_3L 1638909..1639078 8..180 97   Minus

BS08704.complete Sequence

1010 bp (1010 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636240

> BS08704.complete
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCA
GCTCATTGTGGACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAAA
TGTACCGCGTGTGGATTCAGACAAAGTTCAGGAAACCGCTTTAAAAGCTT
TCTAGACCAT

BS08704.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 978 CG13929-PB 1..978 17..994 4890 100 Plus
metl-RA 909 CG13929-PA 94..909 179..994 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 1240 CG13929-RB 164..1142 17..995 4895 100 Plus
metl-RA 1107 CG13929-RA 193..1009 179..995 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1638040..1638855 995..180 4080 100 Minus
3L 28110227 3L 1638908..1639072 181..17 825 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:07:33 has no hits.

BS08704.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:49 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 1..978 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:22 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 154..1138 8..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:16 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 164..1139 17..992 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:49 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 154..1138 8..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:42 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 164..1139 17..992 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:42 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1638043..1638854 181..992 100 <- Minus
3L 1638909..1639072 17..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:16 Download gff for BS08704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1638043..1638854 181..992 100 <- Minus
arm_3L 1638909..1639072 17..180 100   Minus

BS08704.pep Sequence

Translation from 16 to 993

> BS08704.pep
MLTTSSSTMLGKYGWQILRRLASKSWEHTRQRKKPSGAGSRVLTDAREVF
EFNAWDHVQWDEEQELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDSFY
GIHDNRFFKDRHWLFTEFPELAPLAADSAVLQPRSIFELGCGVGNTILPL
LQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVP
FEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDL
AQLRFKSGKCMEDNFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDR
RLQVNRCRGLKMYRVWIQTKFRKPL*

BS08704.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
metl-PB 325 CG13929-PB 1..325 1..325 1720 100 Plus
metl-PA 302 CG13929-PA 8..302 31..325 1495 95.6 Plus
CG34195-PA 283 CG34195-PA 27..280 74..323 480 39.7 Plus