Clone Sequence Records
BS08704.3prime Sequence
927 bp (806 high quality bases) assembled on 2006-01-11
> BS08704.3prime
ATGGTCTAGAAAGCTTTTAAAGCGGTTTCCTGAACTTTGTCTGAATCCAC
ACGCGGTACATTTTCAAGCCGCGACAGCGATTAACTTGCAGTCTTCGGTC
CACAATGAGCTGCTCCTCCTGCAGCCCCGCTTGAGTCATCATACCCCGCA
GTTCTTCCTCCGTGAAGAAGTACACCATGGTGCCGTCGCCTCGCACGTAG
AAGTTGTCCTCCATACACTTGCCGCTCTTGAAGCGCAGCTGTGCCAGGTC
GTATCGTCCGTAGTCGCGGAAGAGGAGCAAGCCACCGGGACGCAGGTAGC
GATAGCAATTGTCCAATACCCGCTGCATTTTCTTTGGCTCAATTGCGGAC
AGCACAAAAATCATCACAATAATGTCCTGTGAGTTTTCCTCGAAGGGCAC
CTGCCAATGATCCAGCGTGGCATCCATGACAAACACCTCGCAGCGCTTCT
CGTCGAACTGCCGTTGGCTTCGCAGGATTTCAATGGCCCGGGCGGAGAAG
TCACATCCGAAAACCTTGAGCTGCGGTTCAGAGCTGTACTGTAGAAGGGG
TAAAATTGTGTTTCCTACTCCACAGCCCAGTTCGAAAATGCTACGTGGTT
GCAGTACCGCCGAATCCGCCGCCAGAGGAGCTAGTTCGGGGAACTCCGTA
AACAGCCAGTGGCGATCCTTGAAGAAGCGGTTGTCGTGAATGCCGTAGAA
GGAATCCCAAAACTTGGGGGCGTCTGTCTGAAATCGCTCCTTCTGCTCCG
CTTCCATCTTTGAGGTCGAATTCTTGGCTACAGCCGCCTTCGCGGCCAGT
TCCTGCTCTTCATCCCATTGCACGTGGTCCCAGGCGTTAAACTCGAACAC
CTCTCGCGCGTCGGTGAGCACCCGGCTGCCCGCTCCCGACGGTTTTTTAC
GCTGGCGAGTGTGTTCCCAACTTTTGC
BS08704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13929-PB | 978 | metl-RB | 68..978 | 927..17 | 4555 | 100 | Minus |
CG13929-PA | 909 | metl-RA | 94..909 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 1240 | CG13929-RB | 231..1142 | 927..16 | 4560 | 100 | Minus |
metl-RA | 1107 | CG13929-RA | 193..1009 | 832..16 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1638040..1638855 | 16..831 | 4080 | 100 | Plus |
3L | 28110227 | 3L | 1638908..1639005 | 830..927 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:56:02 has no hits.
BS08704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:50 Download gff for
BS08704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 68..978 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:51 Download gff for
BS08704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 68..978 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:56 Download gff for
BS08704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 231..1142 | 16..927 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:22 Download gff for
BS08704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 231..1142 | 16..927 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:22 Download gff for
BS08704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1638040..1638854 | 16..830 | 100 | <- | Plus |
3L | 1638909..1639005 | 831..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:56 Download gff for
BS08704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1638040..1638854 | 16..830 | 100 | <- | Plus |
arm_3L | 1638909..1639005 | 831..927 | 100 | | Plus |
BS08704.5prime Sequence
955 bp (749 high quality bases) assembled on 2006-01-11
> BS08704.5prime
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCA
GCTCATTGTGGACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAAT
GTACC
BS08704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13929-PB | 978 | metl-RB | 1..933 | 17..949 | 4665 | 100 | Plus |
CG13929-PA | 909 | metl-RA | 94..864 | 179..949 | 3855 | 100 | Plus |
CG13929-PA | 909 | metl-RA | 65..96 | 17..48 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 1240 | CG13929-RB | 164..1103 | 17..955 | 4675 | 99.9 | Plus |
metl-RA | 1107 | CG13929-RA | 193..970 | 179..955 | 3865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1638086..1638855 | 949..180 | 3850 | 100 | Minus |
3L | 28110227 | 3L | 1638908..1639072 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:38:56 has no hits.
BS08704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:52 Download gff for
BS08704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 1..940 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:52 Download gff for
BS08704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 1..940 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:38 Download gff for
BS08704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 158..1103 | 8..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:40 Download gff for
BS08704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 158..1103 | 8..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:40 Download gff for
BS08704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1638079..1638854 | 181..955 | 99 | <- | Minus |
3L | 1638909..1639078 | 8..180 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:38 Download gff for
BS08704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1638079..1638854 | 181..955 | 99 | <- | Minus |
arm_3L | 1638909..1639078 | 8..180 | 97 | | Minus |
BS08704.complete Sequence
1010 bp (1010 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636240
> BS08704.complete
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCA
GCTCATTGTGGACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAAA
TGTACCGCGTGTGGATTCAGACAAAGTTCAGGAAACCGCTTTAAAAGCTT
TCTAGACCAT
BS08704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 978 | CG13929-PB | 1..978 | 17..994 | 4890 | 100 | Plus |
metl-RA | 909 | CG13929-PA | 94..909 | 179..994 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 1240 | CG13929-RB | 164..1142 | 17..995 | 4895 | 100 | Plus |
metl-RA | 1107 | CG13929-RA | 193..1009 | 179..995 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1638040..1638855 | 995..180 | 4080 | 100 | Minus |
3L | 28110227 | 3L | 1638908..1639072 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:07:33 has no hits.
BS08704.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:49 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 1..978 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:22 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 154..1138 | 8..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:16 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 164..1139 | 17..992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:49 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 154..1138 | 8..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:42 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 164..1139 | 17..992 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:42 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1638043..1638854 | 181..992 | 100 | <- | Minus |
3L | 1638909..1639072 | 17..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:16 Download gff for
BS08704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1638043..1638854 | 181..992 | 100 | <- | Minus |
arm_3L | 1638909..1639072 | 17..180 | 100 | | Minus |
BS08704.pep Sequence
Translation from 16 to 993
> BS08704.pep
MLTTSSSTMLGKYGWQILRRLASKSWEHTRQRKKPSGAGSRVLTDAREVF
EFNAWDHVQWDEEQELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDSFY
GIHDNRFFKDRHWLFTEFPELAPLAADSAVLQPRSIFELGCGVGNTILPL
LQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVP
FEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDL
AQLRFKSGKCMEDNFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDR
RLQVNRCRGLKMYRVWIQTKFRKPL*
BS08704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-PB | 325 | CG13929-PB | 1..325 | 1..325 | 1720 | 100 | Plus |
metl-PA | 302 | CG13929-PA | 8..302 | 31..325 | 1495 | 95.6 | Plus |
CG34195-PA | 283 | CG34195-PA | 27..280 | 74..323 | 480 | 39.7 | Plus |