Clone Sequence Records
BS08705.3prime Sequence
411 bp (410 high quality bases) assembled on 2006-01-11
> BS08705.3prime
ATGGTCTAGAAAGCTTTCAGGCCAACGTATGATGGTGTTTCTGGTCGGGA
TAGTTCTCTATGGATTGAATGGAGCGCGATGTGGCGGCAGTAATGGTTGA
AGATACGTCCATAAACCGATATTTCTTGTCATCGCGACAGAGTAAGGGGT
AGCAAATGATGCCGTAGTAGAAGACGAGGCAGAGAACGATTACGGTGAAG
ATGATGGCGATGATGCCGAATGTGGAGATTCCGGGTCGACTATCCAGATA
CTCCTTGGCCGTCTGCGGGGGCTGGGTGGTGGTGGGCGGTTCCGTGGCCT
TGTAACCCCTTCGATTGTTCCGCGCTGCACTCGCACTGAAAACCAAGCAG
CTGGCGCCTAAAAACAGCACACACAACAGGTACGAACTGCGAGACATGTC
GACTGATAACT
BS08705.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-PA | 381 | CG4455-RA | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 1528 | CG4455-RA | 162..542 | 397..17 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16353211..16353553 | 359..17 | 1715 | 100 | Minus |
2L | 23513712 | 2L | 16353095..16353135 | 397..357 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:37:28 has no hits.
BS08705.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:53 Download gff for
BS08705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:54 Download gff for
BS08705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:16 Download gff for
BS08705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..542 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:35 Download gff for
BS08705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..542 | 17..397 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:35 Download gff for
BS08705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16353095..16353134 | 358..397 | 100 | -> | Minus |
2L | 16353213..16353553 | 17..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:16 Download gff for
BS08705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16353095..16353134 | 358..397 | 100 | -> | Minus |
arm_2L | 16353213..16353553 | 17..357 | 100 | | Minus |
BS08705.5prime Sequence
411 bp (410 high quality bases) assembled on 2006-01-11
> BS08705.5prime
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCTGAAAG
CTTTCTAGACC
BS08705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-PA | 381 | CG4455-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 1528 | CG4455-RA | 162..542 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16353211..16353553 | 55..397 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 16353095..16353135 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:37:49 has no hits.
BS08705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:54 Download gff for
BS08705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:55 Download gff for
BS08705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:03 Download gff for
BS08705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..542 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:47 Download gff for
BS08705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..542 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:47 Download gff for
BS08705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
2L | 16353213..16353553 | 57..397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:03 Download gff for
BS08705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
arm_2L | 16353213..16353553 | 57..397 | 100 | | Plus |
BS08705.complete Sequence
413 bp (413 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636241
> BS08705.complete
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCTGAAAG
CTTTCTAGACCAT
BS08705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 381 | CG4455-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 1528 | CG4455-RA | 162..542 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16353211..16353553 | 55..397 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 16353095..16353135 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:01 has no hits.
BS08705.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:50 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:10 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 160..540 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:37 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..541 | 17..396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:50 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 160..540 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:56 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..541 | 17..396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:56 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
2L | 16353213..16353552 | 57..396 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:37 Download gff for
BS08705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
arm_2L | 16353213..16353552 | 57..396 | 100 | | Plus |
BS08705.pep Sequence
Translation from 16 to 396
> BS08705.pep
MSRSSYLLCVLFLGASCLVFSASAARNNRRGYKATEPPTTTQPPQTAKEY
LDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFMDVSS
TITAATSRSIQSIENYPDQKHHHTLA*
BS08705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-PA | 126 | CG4455-PA | 1..126 | 1..126 | 657 | 100 | Plus |