Clone BS08705 Report

Search the DGRC for BS08705

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG4455-RA
Protein status:BS08705.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08705.3prime Sequence

411 bp (410 high quality bases) assembled on 2006-01-11

> BS08705.3prime
ATGGTCTAGAAAGCTTTCAGGCCAACGTATGATGGTGTTTCTGGTCGGGA
TAGTTCTCTATGGATTGAATGGAGCGCGATGTGGCGGCAGTAATGGTTGA
AGATACGTCCATAAACCGATATTTCTTGTCATCGCGACAGAGTAAGGGGT
AGCAAATGATGCCGTAGTAGAAGACGAGGCAGAGAACGATTACGGTGAAG
ATGATGGCGATGATGCCGAATGTGGAGATTCCGGGTCGACTATCCAGATA
CTCCTTGGCCGTCTGCGGGGGCTGGGTGGTGGTGGGCGGTTCCGTGGCCT
TGTAACCCCTTCGATTGTTCCGCGCTGCACTCGCACTGAAAACCAAGCAG
CTGGCGCCTAAAAACAGCACACACAACAGGTACGAACTGCGAGACATGTC
GACTGATAACT

BS08705.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 381 CG4455-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1528 CG4455-RA 162..542 397..17 1905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16353553 359..17 1715 100 Minus
2L 23513712 2L 16353095..16353135 397..357 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:37:28 has no hits.

BS08705.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:53 Download gff for BS08705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:54 Download gff for BS08705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:16 Download gff for BS08705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..542 17..397 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:35 Download gff for BS08705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..542 17..397 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:35 Download gff for BS08705.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16353095..16353134 358..397 100 -> Minus
2L 16353213..16353553 17..357 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:16 Download gff for BS08705.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16353095..16353134 358..397 100 -> Minus
arm_2L 16353213..16353553 17..357 100   Minus

BS08705.5prime Sequence

411 bp (410 high quality bases) assembled on 2006-01-11

> BS08705.5prime
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCTGAAAG
CTTTCTAGACC

BS08705.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 381 CG4455-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1528 CG4455-RA 162..542 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16353553 55..397 1715 100 Plus
2L 23513712 2L 16353095..16353135 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 21:37:49 has no hits.

BS08705.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:54 Download gff for BS08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:55 Download gff for BS08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:03 Download gff for BS08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..542 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:47 Download gff for BS08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..542 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:47 Download gff for BS08705.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16353095..16353134 17..56 100 -> Plus
2L 16353213..16353553 57..397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:03 Download gff for BS08705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16353095..16353134 17..56 100 -> Plus
arm_2L 16353213..16353553 57..397 100   Plus

BS08705.complete Sequence

413 bp (413 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636241

> BS08705.complete
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCTGAAAG
CTTTCTAGACCAT

BS08705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 381 CG4455-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1528 CG4455-RA 162..542 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16353553 55..397 1715 100 Plus
2L 23513712 2L 16353095..16353135 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:34:01 has no hits.

BS08705.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:50 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:10 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 160..540 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:37 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..541 17..396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:50 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 160..540 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:56 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..541 17..396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:56 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16353095..16353134 17..56 100 -> Plus
2L 16353213..16353552 57..396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:37 Download gff for BS08705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16353095..16353134 17..56 100 -> Plus
arm_2L 16353213..16353552 57..396 100   Plus

BS08705.pep Sequence

Translation from 16 to 396

> BS08705.pep
MSRSSYLLCVLFLGASCLVFSASAARNNRRGYKATEPPTTTQPPQTAKEY
LDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFMDVSS
TITAATSRSIQSIENYPDQKHHHTLA*

BS08705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 126 CG4455-PA 1..126 1..126 657 100 Plus