Clone Sequence Records
BS08706.3prime Sequence
942 bp (779 high quality bases) assembled on 2006-01-11
> BS08706.3prime
ATGGTCTAGAAAGCTTTTACATAGAGTTATTGAAGCCGAGGCGGTCAAAA
ACAGAGCCAGATTGATCTCGCTGCCTGCTGTGACCAGCATTCATGCTGTT
ATGGCGCCTTGGCGGAACATATTTCTTCTGTGGCTCCGGTCGCGGCTGTC
GATGTGGCGGAGCTGGTGGAGCTCTAAGGGGAGCGGAGGTCGCGGTTTTT
CCAAGCCTCCTGTGGACGGGCACCGTGTCCTGTCGGCTAAACAGCTCGTC
GCTGCGCATGCGTATGGTCTTGCCCTTAACAGGACTGAGTCGAGCCTGTG
GTTTCCTTGCAGGCGATGCCTTTAGGTTGTATGTCTTCTTCGTGGCATGA
AGTTTGGATACCATTCCGAGCCTTGATTTAATATTATTCGCAAAACTTTT
GCCCTGCCTATTTTTGTATGCCGATTCGGGAACGATTTCCCGAACCTCCG
CTGTCGAGGCGAACTTAACAATCTTTTCGCCGGCTCCCATATCAAAATCT
TCTCCGCTGGACATGTAATCCTCTTCGTCACTTTCGAAATCGTCCATGCT
ATCATCGTCGTCGTCGCCTTTTTTAAGAGGCACTTTGTGAACTAGCATGA
CCTTTTGCTGCGTTACAGCGGCCACCTTCTTCGCTTTCACAATGGGCGAG
TTCTTGGTGACCCCTCCTCCTCCTCCTCCACCACCAACTGTACGGTGTGT
GTTTTTAAGGATCGATTTGATTTCCCTGGTCGAAGTGAACTCCTCCGGAA
GAGCGCCCTGCTTGCCACCGAGTCGAGCGAAGACCGAATTATTGCTGGAG
GTGGCCGCTGTTTTTGATGCGCCGGCAACGTGCACGCGAACGCTGCTCTC
GCCCGAACTGGAGACAATGCCCTCCTGCGCCTCGTCCTCGGCATGCAGGC
GCGTAAATATGTCCGACTTTTTGGAGCTGCTCACACAATCGG
BS08706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-PA | 1368 | CG16812-RA | 443..1368 | 942..17 | 4555 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1721 | CG16812-RA | 585..1511 | 942..16 | 4590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13223351..13223932 | 942..361 | 2880 | 99.7 | Minus |
2L | 23513712 | 2L | 13223990..13224335 | 361..16 | 1715 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:32:58 has no hits.
BS08706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:55 Download gff for
BS08706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 443..1368 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:57 Download gff for
BS08706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 443..1368 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:37:00 Download gff for
BS08706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 585..1518 | 6..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:29 Download gff for
BS08706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 585..1518 | 6..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:29 Download gff for
BS08706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13223351..13223932 | 361..942 | 99 | -> | Minus |
2L | 13223991..13224342 | 6..360 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:00 Download gff for
BS08706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13223351..13223932 | 361..942 | 99 | -> | Minus |
arm_2L | 13223991..13224342 | 6..360 | 98 | | Minus |
BS08706.5prime Sequence
888 bp (791 high quality bases) assembled on 2006-01-11
> BS08706.5prime
GAAGTTATCAGTCGAGATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAGGCGACGACGACGATGATA
GCATGGACGATTTCGAAAGTGACGAAGAGGATTACATG
BS08706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-PA | 1368 | CG16812-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
CG16812-PA | 1368 | CG16812-RA | 812..873 | 827..888 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1721 | CG16812-RA | 143..1015 | 17..888 | 4340 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13223345..13223781 | 453..888 | 2135 | 99.8 | Plus |
2L | 23513712 | 2L | 13222869..13223288 | 33..452 | 2100 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:43:37 has no hits.
BS08706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:56 Download gff for
BS08706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 1..873 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:58 Download gff for
BS08706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 1..873 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:10 Download gff for
BS08706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1015 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:32 Download gff for
BS08706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1015 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:32 Download gff for
BS08706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
2L | 13223345..13223781 | 453..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:10 Download gff for
BS08706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
arm_2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
arm_2L | 13223345..13223781 | 453..888 | 99 | | Plus |
BS08706.complete Sequence
1400 bp assembled on 2009-02-12
> BS08706.complete
GAAGTTATCAGTCGAGATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAAGGCGACGACGACGATGAT
AGCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGGAGA
AGATTTTGATATGGGAGCCGGCGAAAAGATTGTTAAGTTCGCCTCGACAG
CGGAGGTTCGGGAAATCGTTCCCGAATCGGCATACAAAAATAGGCAGGGC
AAAAGTTTTGCGAATAATATTAAATCAAGGCTCGGAATGGTATCCAAACT
TCATGCCACGAAGAAGACATACAACCTAAAGGCATCGCCTGCAAGGAAAC
CACAGGCTCGACTCAGTCCTGTTAAGGGCAAGACCATACGCATGCGCAGC
GACGAGCTGTTTAGCCGACAGGACACGGTGCCCGTCCACAGGAGGCTTGG
AAAAACCGCGACCTCCGCTCCCCTTAGAGCTCCACCAGCTCCGCCACATC
GACAGCCGCGACCGGAGCCACAGAAGAAATATGTTCCGCCAAGGCGCCAT
AACAGCATGAATGCTGGTCACAGCAGGCAGCGAGATCAATCTGGCTCTGT
TTTTGACCGCCTCGGCTTCAATAACTCTATGTAAAAGCTTTCTAGACCAT
BS08706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1368 | CG16812-PA | 1..1368 | 17..1384 | 6825 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1721 | CG16812-RA | 143..1511 | 17..1385 | 6830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13223345..13223932 | 453..1040 | 2940 | 100 | Plus |
2L | 23513712 | 2L | 13222869..13223288 | 33..452 | 2100 | 100 | Plus |
2L | 23513712 | 2L | 13223990..13224335 | 1040..1385 | 1715 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:29:53 has no hits.
BS08706.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:49 Download gff for
BS08706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 169..1534 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:58 Download gff for
BS08706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1508 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:19 Download gff for
BS08706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1508 | 17..1382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:19 Download gff for
BS08706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
2L | 13223345..13223932 | 453..1040 | 100 | -> | Plus |
2L | 13223991..13224332 | 1041..1382 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:58 Download gff for
BS08706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
arm_2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
arm_2L | 13223345..13223932 | 453..1040 | 100 | -> | Plus |
arm_2L | 13223991..13224332 | 1041..1382 | 99 | | Plus |
BS08706.pep Sequence
Translation from 16 to 1383
> BS08706.pep
MSKSSAARWVKFFNAAGIPSPAAAGYAHVFVENRIQDDMLLDLNKEYLRE
MGITLMGDIIAILRHSKTVCEQNAREQVLTTEVVQSVVRPVSPKPKAPVA
TPKAKVYPPAKPARRVLPEHEGKYKVTLPSGTTERSKQILAKREKLYSDR
VSSSKKSDIFTRLHAEDEAQEGIVSSSGESSVRVHVAGASKTAATSSNNS
VFARLGGKQGALPEEFTSTREIKSILKNTHRTVGGGGGGGGVTKNSPIVK
AKKVAAVTQQKVMLVHKVPLKKGDDDDDSMDDFESDEEDYMSSGEDFDMG
AGEKIVKFASTAEVREIVPESAYKNRQGKSFANNIKSRLGMVSKLHATKK
TYNLKASPARKPQARLSPVKGKTIRMRSDELFSRQDTVPVHRRLGKTATS
APLRAPPAPPHRQPRPEPQKKYVPPRRHNSMNAGHSRQRDQSGSVFDRLG
FNNSM*
BS08706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-PA | 455 | CG16812-PA | 1..455 | 1..455 | 2317 | 100 | Plus |