Clone BS08706 Report

Search the DGRC for BS08706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG16812-RA
Protein status:BS08706.pep: full length peptide match
Sequenced Size:1400

Clone Sequence Records

BS08706.3prime Sequence

942 bp (779 high quality bases) assembled on 2006-01-11

> BS08706.3prime
ATGGTCTAGAAAGCTTTTACATAGAGTTATTGAAGCCGAGGCGGTCAAAA
ACAGAGCCAGATTGATCTCGCTGCCTGCTGTGACCAGCATTCATGCTGTT
ATGGCGCCTTGGCGGAACATATTTCTTCTGTGGCTCCGGTCGCGGCTGTC
GATGTGGCGGAGCTGGTGGAGCTCTAAGGGGAGCGGAGGTCGCGGTTTTT
CCAAGCCTCCTGTGGACGGGCACCGTGTCCTGTCGGCTAAACAGCTCGTC
GCTGCGCATGCGTATGGTCTTGCCCTTAACAGGACTGAGTCGAGCCTGTG
GTTTCCTTGCAGGCGATGCCTTTAGGTTGTATGTCTTCTTCGTGGCATGA
AGTTTGGATACCATTCCGAGCCTTGATTTAATATTATTCGCAAAACTTTT
GCCCTGCCTATTTTTGTATGCCGATTCGGGAACGATTTCCCGAACCTCCG
CTGTCGAGGCGAACTTAACAATCTTTTCGCCGGCTCCCATATCAAAATCT
TCTCCGCTGGACATGTAATCCTCTTCGTCACTTTCGAAATCGTCCATGCT
ATCATCGTCGTCGTCGCCTTTTTTAAGAGGCACTTTGTGAACTAGCATGA
CCTTTTGCTGCGTTACAGCGGCCACCTTCTTCGCTTTCACAATGGGCGAG
TTCTTGGTGACCCCTCCTCCTCCTCCTCCACCACCAACTGTACGGTGTGT
GTTTTTAAGGATCGATTTGATTTCCCTGGTCGAAGTGAACTCCTCCGGAA
GAGCGCCCTGCTTGCCACCGAGTCGAGCGAAGACCGAATTATTGCTGGAG
GTGGCCGCTGTTTTTGATGCGCCGGCAACGTGCACGCGAACGCTGCTCTC
GCCCGAACTGGAGACAATGCCCTCCTGCGCCTCGTCCTCGGCATGCAGGC
GCGTAAATATGTCCGACTTTTTGGAGCTGCTCACACAATCGG

BS08706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 1368 CG16812-RA 443..1368 942..17 4555 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1721 CG16812-RA 585..1511 942..16 4590 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223351..13223932 942..361 2880 99.7 Minus
2L 23513712 2L 13223990..13224335 361..16 1715 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 17:32:58 has no hits.

BS08706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:55 Download gff for BS08706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 443..1368 17..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:57 Download gff for BS08706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 443..1368 17..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:37:00 Download gff for BS08706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 585..1518 6..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:29 Download gff for BS08706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 585..1518 6..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:29 Download gff for BS08706.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13223351..13223932 361..942 99 -> Minus
2L 13223991..13224342 6..360 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:00 Download gff for BS08706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13223351..13223932 361..942 99 -> Minus
arm_2L 13223991..13224342 6..360 98   Minus

BS08706.5prime Sequence

888 bp (791 high quality bases) assembled on 2006-01-11

> BS08706.5prime
GAAGTTATCAGTCGAGATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAGGCGACGACGACGATGATA
GCATGGACGATTTCGAAAGTGACGAAGAGGATTACATG

BS08706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 1368 CG16812-RA 1..815 17..831 4075 100 Plus
CG16812-PA 1368 CG16812-RA 812..873 827..888 310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1721 CG16812-RA 143..1015 17..888 4340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223345..13223781 453..888 2135 99.8 Plus
2L 23513712 2L 13222869..13223288 33..452 2100 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:43:37 has no hits.

BS08706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:56 Download gff for BS08706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 1..873 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:58 Download gff for BS08706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 1..873 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:10 Download gff for BS08706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1015 17..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:32 Download gff for BS08706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1015 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:32 Download gff for BS08706.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13222729..13222747 17..35 100 -> Plus
2L 13222872..13223288 36..452 100 -> Plus
2L 13223345..13223781 453..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:10 Download gff for BS08706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13222729..13222747 17..35 100 -> Plus
arm_2L 13222872..13223288 36..452 100 -> Plus
arm_2L 13223345..13223781 453..888 99   Plus

BS08706.complete Sequence

1400 bp assembled on 2009-02-12

> BS08706.complete
GAAGTTATCAGTCGAGATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAAGGCGACGACGACGATGAT
AGCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGGAGA
AGATTTTGATATGGGAGCCGGCGAAAAGATTGTTAAGTTCGCCTCGACAG
CGGAGGTTCGGGAAATCGTTCCCGAATCGGCATACAAAAATAGGCAGGGC
AAAAGTTTTGCGAATAATATTAAATCAAGGCTCGGAATGGTATCCAAACT
TCATGCCACGAAGAAGACATACAACCTAAAGGCATCGCCTGCAAGGAAAC
CACAGGCTCGACTCAGTCCTGTTAAGGGCAAGACCATACGCATGCGCAGC
GACGAGCTGTTTAGCCGACAGGACACGGTGCCCGTCCACAGGAGGCTTGG
AAAAACCGCGACCTCCGCTCCCCTTAGAGCTCCACCAGCTCCGCCACATC
GACAGCCGCGACCGGAGCCACAGAAGAAATATGTTCCGCCAAGGCGCCAT
AACAGCATGAATGCTGGTCACAGCAGGCAGCGAGATCAATCTGGCTCTGT
TTTTGACCGCCTCGGCTTCAATAACTCTATGTAAAAGCTTTCTAGACCAT

BS08706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1368 CG16812-PA 1..1368 17..1384 6825 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1721 CG16812-RA 143..1511 17..1385 6830 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223345..13223932 453..1040 2940 100 Plus
2L 23513712 2L 13222869..13223288 33..452 2100 100 Plus
2L 23513712 2L 13223990..13224335 1040..1385 1715 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 08:29:53 has no hits.

BS08706.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:49 Download gff for BS08706.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 169..1534 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:58 Download gff for BS08706.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1508 17..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:19 Download gff for BS08706.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1508 17..1382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:19 Download gff for BS08706.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13222872..13223288 36..452 100 -> Plus
2L 13222729..13222747 17..35 100 -> Plus
2L 13223345..13223932 453..1040 100 -> Plus
2L 13223991..13224332 1041..1382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:58 Download gff for BS08706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13222729..13222747 17..35 100 -> Plus
arm_2L 13222872..13223288 36..452 100 -> Plus
arm_2L 13223345..13223932 453..1040 100 -> Plus
arm_2L 13223991..13224332 1041..1382 99   Plus

BS08706.pep Sequence

Translation from 16 to 1383

> BS08706.pep
MSKSSAARWVKFFNAAGIPSPAAAGYAHVFVENRIQDDMLLDLNKEYLRE
MGITLMGDIIAILRHSKTVCEQNAREQVLTTEVVQSVVRPVSPKPKAPVA
TPKAKVYPPAKPARRVLPEHEGKYKVTLPSGTTERSKQILAKREKLYSDR
VSSSKKSDIFTRLHAEDEAQEGIVSSSGESSVRVHVAGASKTAATSSNNS
VFARLGGKQGALPEEFTSTREIKSILKNTHRTVGGGGGGGGVTKNSPIVK
AKKVAAVTQQKVMLVHKVPLKKGDDDDDSMDDFESDEEDYMSSGEDFDMG
AGEKIVKFASTAEVREIVPESAYKNRQGKSFANNIKSRLGMVSKLHATKK
TYNLKASPARKPQARLSPVKGKTIRMRSDELFSRQDTVPVHRRLGKTATS
APLRAPPAPPHRQPRPEPQKKYVPPRRHNSMNAGHSRQRDQSGSVFDRLG
FNNSM*

BS08706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 455 CG16812-PA 1..455 1..455 2317 100 Plus