Clone Sequence Records
BS08707.3prime Sequence
905 bp (851 high quality bases) assembled on 2006-01-11
> BS08707.3prime
ATGGTCTAGAAAGCTTTTAATCGTAGTACCAGTCCAAGAAGAGCAGGGAG
AACGACATGACCAGCAGGAAGAACAGCGACCACACGCGTAGTCCTGCATT
TCGTTGAGTGGCCTGCCGGATTTGCTCGTTGGCGTCCTTGACGTTTTCCG
TGGTGCCCACGACGGCACTAACTATCCTGTCGATATTGTGCTGTTGCATG
GCGACCTTTTCGGTGAAAATGTCCTGCAGTTGGGCAATGTCTACCACGTT
CTTTTCGATCTGCTCCACCTCCTCGGAGACGCCCTGCAGAAAGTTGTAGA
TGTGTACGTTCTCCGCCTCGAAGAGCTGCACATCCTCGGCGCTTAGGGGA
TCGTCATCGTCGGCCTCCTGCTGCTGCTGGAGCTCCTCATCCAGAGCCAT
CTTGGAGGATGAGTTGTTCAGATCCGATCTGTTGGCTTTGCTTCGTTTGC
GCGTACGCGGTTTGTGTTGATTGGCCTGATTGGCTTCCTTGCCCTTCTCG
CCATCGTGATCGTCCACCTCGTCGCCTTCCTCGTCTTCATCCCAGTCGCC
CCAGGCGTCGTTATTCCAGTCATTGTCGGCGGACTCGTCGTGGTTGCCAT
TTGCTTGTGAAGATGACTTCGTGGCTTCGCTGTCATCGTTGCTGACCTGG
CGCCTGCCCAGCTTGCCACTGTTGCTGCCCGCCGGACGCACTGGTATCTT
CTTTTTGTCCGCCGCCAGCTTGAGCAGCCTATAGGTTTCCAGTTCGTGTT
GCACACGGTACTTCTTTTGGTCCAGATAGATCTGTTCCACGCTGTGCAAA
TAGCTGACCAGCAGGTCCAGCACGGCGTCGATGTGCTGACGCTCCTGCGG
CTTTCGCTTGGCGCTCTTCCAATCGCTGCGCATCTTGGCCAGGTGCTGCG
TGTAA
BS08707.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13626-PA | 1188 | Syx18-RA | 300..1188 | 905..17 | 4420 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx18-RA | 1442 | CG13626-RA | 389..1277 | 905..17 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24624473..24625174 | 204..905 | 3495 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24623967..24624157 | 17..207 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:07:46 has no hits.
BS08707.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:57 Download gff for
BS08707.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-PA | 302..1188 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:49:59 Download gff for
BS08707.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13626-PA | 302..1188 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:19:34 Download gff for
BS08707.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 389..1277 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:08 Download gff for
BS08707.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 389..1277 | 17..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:08 Download gff for
BS08707.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24623967..24624155 | 17..205 | 100 | <- | Plus |
| 3R | 24624475..24625174 | 206..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:19:34 Download gff for
BS08707.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20449689..20449877 | 17..205 | 100 | <- | Plus |
| arm_3R | 20450197..20450896 | 206..905 | 99 | | Plus |
BS08707.5prime Sequence
973 bp (779 high quality bases) assembled on 2006-01-11
> BS08707.5prime
GAAGTTATCAGTCGACATGGACATCACCCAGAGCTTCAAGGCCAGCGTAA
TGACGGTGCGCCTGCAGCGCAAGGCCGAGCTGGCCGGAAAGGCCAAGCCC
GCCACAGTGCCGACAAAAACTGGACCAATTGGCCCAAAGGATGACTTCGC
CAAGCAGGCCAAGGAGGTGTGCAACAAGATCACTTCGCTGCGCAATGTGC
TGATCGAGAACCGCACCGCCTACATGCGCATTGGCCAGCACCTCAAGTCC
GCCGCACACATGACCGACGCGCAGCGGGATCTGATTGATCGCGAGTCGGA
GAAGTTCGTCACCTTTTACACGCAGCACCTGGCCAAGATGCGCAGCGATT
GGAAGAGCGCCAAGCGGAAGCCGCAGGAGCGTCAGCACATCGACGCCGTG
CTGGACCTGCTGGTCAGCTATTTGCACAGCGTGGAACAGATCTATCTGGA
CCAAAAGAAGTACCGTGTGCAACACGAACTGGAAACCTATAGGCTGCTCA
AGCTGGCGGCGGACAAAAAGAAGATACCAGTGCGTCCGGCGGGCAGCAAC
AGTGGCAAGCTGGGCAGGCGCCAGGTCAGCAACGATGACAGCGAAGCCAC
GAAGTCATCTTCACAAGCAAATGGCAACCACGACGAGTCCGCCGACAATG
ACTGGAATAACGACGCCTGGGGCGACTGGGATGAAGACGAGGAAGGCGAC
GAGGTGGACGATCACGATGGCGAGAAGGGCAAGGAAGCCAATCAGGCCAA
TCAACACAAACCGCGTACGCGCAAACGAAGCAAAGCCAACAGATCGGATC
TGAACAACTCATCCTCCAAGATGGCTCTGGATGAGGAGCTCCAGCAGCAG
CAGGAGGCCGACGATGACGATCCCCTAAACGCCGAGGATGTGCAGCTCTT
CGAGGCGGAGAACGTACACATCTACCACTTTCTGCAGGGCGTCTTCCAAG
AGGTGGAGCAGATCGAAAAGAAC
BS08707.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13626-PA | 1188 | Syx18-RA | 1..957 | 17..973 | 4660 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx18-RA | 1442 | CG13626-RA | 90..1046 | 17..973 | 4710 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24624517..24625473 | 973..17 | 4710 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:23:59 has no hits.
BS08707.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:58 Download gff for
BS08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-PA | 1..957 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:01 Download gff for
BS08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13626-PA | 1..957 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:09 Download gff for
BS08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 90..1046 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:24 Download gff for
BS08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 90..1046 | 17..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:24 Download gff for
BS08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24624517..24625473 | 17..973 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:09 Download gff for
BS08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20450239..20451195 | 17..973 | 99 | | Minus |
BS08707.complete Sequence
1220 bp (1220 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636242
> BS08707.complete
GAAGTTATCAGTCGACATGGACATCACCCAGAGCTTCAAGGCCAGCGTAA
TGACGGTGCGCCTGCAGCGCAAGGCCGAGCTGGCCGGAAAGGCCAAGCCC
GCCACAGTGCCGACAAAAACTGGACCAATTGGCCCAAAGGATGACTTCGC
CAAGCAGGCCAAGGAGGTGTGCAACAAGATCACTTCGCTGCGCAATGTGC
TGATCGAGAACCGCACCGCCTACATGCGCATTGGCCAGCACCTCAAGTCC
GCCGCACACATGACCGACGCGCAGCGGGATCTGATTGATCGCGAGTCGGA
GAAGTTCGTCACCTTTTACACGCAGCACCTGGCCAAGATGCGCAGCGATT
GGAAGAGCGCCAAGCGGAAGCCGCAGGAGCGTCAGCACATCGACGCCGTG
CTGGACCTGCTGGTCAGCTATTTGCACAGCGTGGAACAGATCTATCTGGA
CCAAAAGAAGTACCGTGTGCAACACGAACTGGAAACCTATAGGCTGCTCA
AGCTGGCGGCGGACAAAAAGAAGATACCAGTGCGTCCGGCGGGCAGCAAC
AGTGGCAAGCTGGGCAGGCGCCAGGTCAGCAACGATGACAGCGAAGCCAC
GAAGTCATCTTCACAAGCAAATGGCAACCACGACGAGTCCGCCGACAATG
ACTGGAATAACGACGCCTGGGGCGACTGGGATGAAGACGAGGAAGGCGAC
GAGGTGGACGATCACGATGGCGAGAAGGGCAAGGAAGCCAATCAGGCCAA
TCAACACAAACCGCGTACGCGCAAACGAAGCAAAGCCAACAGATCGGATC
TGAACAACTCATCCTCCAAGATGGCTCTGGATGAGGAGCTCCAGCAGCAG
CAGGAGGCCGACGATGACGATCCCCTAAGCGCCGAGGATGTGCAGCTCTT
CGAGGCGGAGAACGTACACATCTACAACTTTCTGCAGGGCGTCTCCGAGG
AGGTGGAGCAGATCGAAAAGAACGTGGTAGACATTGCCCAACTGCAGGAC
ATTTTCACCGAAAAGGTCGCCATGCAACAGCACAATATCGACAGGATAGT
TAGTGCCGTCGTGGGCACCACGGAAAACGTCAAGGACGCCAACGAGCAAA
TCCGGCAGGCCACTCAACGAAATGCAGGACTACGCGTGTGGTCGCTGTTC
TTCCTGCTGGTCATGTCGTTCTCCCTGCTCTTCTTGGACTGGTACTACGA
TTAAAAGCTTTCTAGACCAT
BS08707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx18-RA | 1188 | CG13626-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx18-RA | 1442 | CG13626-RA | 90..1277 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24624473..24625473 | 1017..17 | 5005 | 100 | Minus |
| 3R | 32079331 | 3R | 24623967..24624157 | 1204..1014 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:52:46 has no hits.
BS08707.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:51 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 1..1188 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:24 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 108..1295 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:13 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 90..1275 | 17..1202 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:51 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 108..1295 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:00 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx18-RA | 90..1275 | 17..1202 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:00 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24623969..24624155 | 1016..1202 | 100 | <- | Minus |
| 3R | 24624475..24625473 | 17..1015 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:13 Download gff for
BS08707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20449691..20449877 | 1016..1202 | 100 | <- | Minus |
| arm_3R | 20450197..20451195 | 17..1015 | 100 | | Minus |
BS08707.pep Sequence
Translation from 16 to 1203
> BS08707.pep
MDITQSFKASVMTVRLQRKAELAGKAKPATVPTKTGPIGPKDDFAKQAKE
VCNKITSLRNVLIENRTAYMRIGQHLKSAAHMTDAQRDLIDRESEKFVTF
YTQHLAKMRSDWKSAKRKPQERQHIDAVLDLLVSYLHSVEQIYLDQKKYR
VQHELETYRLLKLAADKKKIPVRPAGSNSGKLGRRQVSNDDSEATKSSSQ
ANGNHDESADNDWNNDAWGDWDEDEEGDEVDDHDGEKGKEANQANQHKPR
TRKRSKANRSDLNNSSSKMALDEELQQQQEADDDDPLSAEDVQLFEAENV
HIYNFLQGVSEEVEQIEKNVVDIAQLQDIFTEKVAMQQHNIDRIVSAVVG
TTENVKDANEQIRQATQRNAGLRVWSLFFLLVMSFSLLFLDWYYD*
BS08707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx18-PA | 395 | CG13626-PA | 1..395 | 1..395 | 2034 | 100 | Plus |
