Clone Sequence Records
BS08709.3prime Sequence
865 bp (788 high quality bases) assembled on 2006-01-11
> BS08709.3prime
ATGGTCTAGAAAGCTTTTAGACACAAGGCTCTACGTAGTTGCCCGGAAAC
AGACCGGTAACACCATCCATGACGCCCTCCCACCAGCCGTCGTCGTTTTT
CTTGAGCACGTACAGCACTGAGCTTTCCTGGAAGCTCAGCTCGTCGTCCT
TGTCGGCATAGTAGTCGTAAATGGCTACCACCTTCTCAATGAAGTTCTTG
GGCACCCAGCCGGGTAAGTTCTGATCCTCGGGCACTATGGGCGCCAGCTG
CGGTCCCGTCGATGTGCGTGGTCGTCCGAAGTCTTGATGCTCATCCTCCG
GCGGCGGCGGAGGTGGCAAGGGAGGCGACTGTGAGCCGGGACGAGCGAAG
TTCAAGCTGAAGTGATTCCTGTTGATATTGCGTCCCAAAGTGTGCATGCC
AATGTGACTCTGCTCGGTCATCTCGTGCTGCGAAACCGTAAGTGGTGAAG
GAGGAGCTGGTGGCATGCTGCTGCGATCGTCGTACGTAGTGGGCGGCGGT
GGTGGCAGCGATTGCATCATGCCCGCGGAGGGCAGGTTTACATGTGTGGC
TATCTGCTGGCTGGGTGGCATCGGAAGTGCACTGTAGCCAGCAGCTCGTT
CATTGCCCGCCGCTCCGCCGCCTGTGGTGGTGGTAGTCATCGTTGAAGAA
GCCGTCGACATTCGCTTTGGATGCCCAATAGGATAGTTGGGAGCGTAGTG
CGATGGCACCTGTGGTGGATTGACCACAGGCGGAGTGCGGTACTCCCGCG
AACTCTTGCCCAGTGTCCCGGTATTGCTGACCGACTTGCCCAGTGTGCCA
GTGTTCCCAGCTCGCGACATCTGCGGCGGAGTTGGGGGGCTTCGTGGTTG
GCGGAAGTCCCACCG
BS08709.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9749-PA | 1422 | Abi-RA | 601..1422 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 644..1491 | 865..17 | 4205 | 99.8 | Minus |
| Abi-RB | 2373 | CG9749-RB | 723..1570 | 865..17 | 4205 | 99.8 | Minus |
| Abi-RA | 2379 | CG9749-RA | 729..1576 | 865..17 | 4205 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120847..14121251 | 460..865 | 1965 | 99.5 | Plus |
| 3R | 32079331 | 3R | 14120285..14120474 | 181..370 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 14120065..14120229 | 17..181 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 14120694..14120785 | 368..459 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:00:44 has no hits.
BS08709.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:47:59 Download gff for
BS08709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-PA | 575..1422 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:03 Download gff for
BS08709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9749-PA | 575..1422 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:46 Download gff for
BS08709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 729..1578 | 13..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:05 Download gff for
BS08709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 729..1578 | 13..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:05 Download gff for
BS08709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120063..14120228 | 13..180 | 98 | <- | Plus |
| 3R | 14120285..14120472 | 181..368 | 100 | <- | Plus |
| 3R | 14120695..14120785 | 369..459 | 100 | <- | Plus |
| 3R | 14120847..14121251 | 460..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:46 Download gff for
BS08709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9945785..9945950 | 13..180 | 98 | <- | Plus |
| arm_3R | 9946007..9946194 | 181..368 | 100 | <- | Plus |
| arm_3R | 9946417..9946507 | 369..459 | 100 | <- | Plus |
| arm_3R | 9946569..9946973 | 460..865 | 99 | | Plus |
BS08709.5prime Sequence
940 bp (775 high quality bases) assembled on 2006-01-11
> BS08709.5prime
GAAGTTATCAGTCGACATGTTGACCGAAACCCCCATGGCCAGCGAGAACA
TCATGGACGAACTAGCCTCTCTGATACGCACCGAGATCCCCGATGGCCGC
CAGAGTCTGCGGGACAGCTACACGAACCTGGAGCGGGTGGCCGACTACTG
CGAGGACACCTACTACCGCGCGGACAACAAGAAGGCGGCCCTGGAGGCCA
CCAAGAACTACACCACCCAGTCGCTGGCCAGCGTGGCCTACCAGATTAAC
ACGCTCGCCTATAGCTACATGCAGCTCCTCGAGCTTCAGGCCCAGCAGCT
CGGCGAGATGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCC
ACAAGGAGAAGGTGGCCAGGAGAGAGATTGGCGTGCTTACGGCTAACAAG
GTGAGCTCGCGCCAGTTTAAGATCGTGGCGCCCATCAATCCGGAGAAGCC
CATCAAGTATGTGCGCAAGCCCATCGACTACTCGATGTTGGACGAGATTG
GCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACATCGG
GGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACC
TCCGCCAACCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGA
ACACTGGCACACTGGGCAAGTCGGTCAGCAATACCGGGACACTGGGCAAG
AGTTCGCGGGAGTACCGCACTCCGCCTGTGGTCAATCCACCACAGGTGCC
ATCGCACTACGCTCCCAACTATCCTATTGGGCATCCAAAGCGAATGTCGA
CGGCTTCTTCAACGATGACTACCACCACCACAGGCGGCGGAGCGGCGGGC
AATGAACGAGCTGCTGGCTACAGTGCACTTCCGATGCACCCAGCCAGCAG
ATAGCCACACATGTAAAACTGCCCTCCGCGGGCATGATGC
BS08709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9749-PA | 1422 | Abi-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
| CG9749-PA | 1422 | Abi-RA | 872..925 | 887..940 | 245 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 69..994 | 16..940 | 4590 | 99.8 | Plus |
| Abi-RE | 2376 | CG9749-RE | 154..1079 | 16..940 | 4590 | 99.8 | Plus |
| Abi-RB | 2373 | CG9749-RB | 148..1073 | 16..940 | 4590 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120901..14121471 | 940..371 | 2790 | 99.6 | Minus |
| 3R | 32079331 | 3R | 14121746..14122102 | 372..16 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:36:45 has no hits.
BS08709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:00 Download gff for
BS08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:04 Download gff for
BS08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9749-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:36 Download gff for
BS08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1073 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:35 Download gff for
BS08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1073 | 9..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:35 Download gff for
BS08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120901..14121469 | 373..940 | 99 | <- | Minus |
| 3R | 14121746..14122106 | 9..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:36 Download gff for
BS08709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9946623..9947191 | 373..940 | 99 | <- | Minus |
| arm_3R | 9947468..9947828 | 9..372 | 98 | | Minus |
BS08709.complete Sequence
1454 bp (1454 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636243
> BS08709.complete
GAAGTTATCAGTCGACATGTTGACCGAAACCCCCATGGCCAGCGAGAACA
TCATGGACGAACTAGCCTCTCTGATACGCACCGAGATCCCCGATGGCCGC
CAGAGTCTGCGGGACAGCTACACGAACCTGGAGCGGGTGGCCGACTACTG
CGAGGACACCTACTACCGCGCGGACAACAAGAAGGCGGCCCTGGAGGCCA
CCAAGAACTACACCACCCAGTCGCTGGCCAGCGTGGCCTACCAGATTAAC
ACGCTCGCCTATAGCTACATGCAGCTCCTCGAGCTTCAGGCCCAGCAGCT
CGGCGAGATGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCC
ACAAGGAGAAGGTGGCCAGGAGAGAGATTGGCGTGCTTACGGCTAACAAG
GTGAGCTCGCGCCAGTTTAAGATCGTGGCGCCCATCAATCCGGAGAAGCC
CATCAAGTATGTGCGCAAGCCCATCGACTACTCGATGTTGGACGAGATTG
GCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACATCGG
GGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACC
TCCGCCAACCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGA
ACACTGGCACACTGGGCAAGTCGGTCAGCAATACCGGGACACTGGGCAAG
AGTTCGCGGGAGTACCGCACTCCGCCTGTGGTCAATCCACCACAGGTGCC
ATCGCACTACGCTCCCAACTATCCTATTGGGCATCCAAAGCGAATGTCGA
CGGCTTCTTCAACGATGACTACCACCACCACAGGCGGCGGAGCGGCGGGC
AATGAACGAGCTGCTGGCTACAGTGCACTTCCGATGCCACCCAGCCAGCA
GATAGCCACACATGTAAACCTGCCCTCCGCGGGCATGATGCAATCGCTGC
CACCACCGCCGCCCACTACGTACGACGATCGCAGCAGCATGCCACCAGCT
CCTCCTTCACCACTTACGGTTTCGCAGCACGAGATGACCGAGCAGAGTCA
CATTGGCATGCACACTTTGGGACGCAATATCAACAGGAATCACTTCAGCT
TGAACTTCGCTCGTCCCGGCTCACAGTCGCCTCCCTTGCCACCTCCGCCG
CCGCCGGAGGATGAGCATCAAGACTTCGGACGACCACGCACATCGACGGG
ACCGCAGCTGGCGCCCATAGTGCCCGAGGATCAGAACTTACCCGGCTGGG
TGCCCAAGAACTTCATTGAGAAGGTGGTAGCCATTTACGACTACTATGCC
GACAAGGACGACGAGCTGAGCTTCCAGGAAAGCTCAGTGCTGTACGTGCT
CAAGAAAAACGACGACGGCTGGTGGGAGGGCGTCATGGATGGTGTTACCG
GTCTGTTTCCGGGCAACTACGTAGAGCCTTGTGTCTAAAAGCTTTCTAGA
CCAT
BS08709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 1422 | CG9749-PF | 1..1422 | 17..1438 | 7110 | 100 | Plus |
| Abi-RB | 1422 | CG9749-PB | 1..1422 | 17..1438 | 7110 | 100 | Plus |
| Abi-RA | 1422 | CG9749-PA | 1..1422 | 17..1438 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 69..1491 | 16..1438 | 7115 | 100 | Plus |
| Abi-RB | 2373 | CG9749-RB | 148..1570 | 16..1438 | 7115 | 100 | Plus |
| Abi-RA | 2379 | CG9749-RA | 154..1576 | 16..1438 | 7115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120847..14121471 | 995..371 | 3125 | 100 | Minus |
| 3R | 32079331 | 3R | 14121746..14122102 | 372..16 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 14120285..14120474 | 1274..1085 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 14120065..14120229 | 1438..1274 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 14120694..14120785 | 1087..996 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:12:38 has no hits.
BS08709.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:52 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 1..1422 | 17..1438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:26 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1572 | 9..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:35 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 160..1574 | 22..1436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:53 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1572 | 9..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:19 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 160..1574 | 22..1436 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:19 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120067..14120228 | 1275..1436 | 100 | <- | Minus |
| 3R | 14120285..14120472 | 1087..1274 | 100 | <- | Minus |
| 3R | 14120695..14120785 | 996..1086 | 100 | <- | Minus |
| 3R | 14120847..14121469 | 373..995 | 100 | <- | Minus |
| 3R | 14121746..14122096 | 22..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:35 Download gff for
BS08709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9945789..9945950 | 1275..1436 | 100 | <- | Minus |
| arm_3R | 9946007..9946194 | 1087..1274 | 100 | <- | Minus |
| arm_3R | 9946417..9946507 | 996..1086 | 100 | <- | Minus |
| arm_3R | 9946569..9947191 | 373..995 | 100 | <- | Minus |
| arm_3R | 9947468..9947818 | 22..372 | 100 | | Minus |
BS08709.pep Sequence
Translation from 16 to 1437
> BS08709.pep
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV*
BS08709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-PF | 473 | CG9749-PF | 1..473 | 1..473 | 2513 | 100 | Plus |
| Abi-PB | 473 | CG9749-PB | 1..473 | 1..473 | 2513 | 100 | Plus |
| Abi-PA | 473 | CG9749-PA | 1..473 | 1..473 | 2513 | 100 | Plus |
| Abi-PD | 477 | CG9749-PD | 1..477 | 1..473 | 2498 | 99.2 | Plus |
| Abi-PE | 472 | CG9749-PE | 1..472 | 1..473 | 2497 | 99.8 | Plus |
