Clone Sequence Records
BS08712.3prime Sequence
924 bp (800 high quality bases) assembled on 2006-01-11
> BS08712.3prime
ATGGTCTAGAAAGCTTTTAGAACAGACCCTTCTTTTTCTTCTCCTTCTTG
CCATCCACATTGTCCGTGCTGCTGTTGGCCCCCAGGCTGCGTCGCTTGAG
CTCCTCGAGCGTCACGTGGTTGACATCCTCCCACTCCTTCTTCTCGCGCT
CGAACTCGCGTCTCTTCTCCTCCAGCTCCCGGATCTGCAGCTCCAGCGCC
TTCTTGCGCTCCTCGTGGCGCCGCGCCAGCTCCAGCTCCGAGTCCCTGAG
CTTCTGCATCTTCTCCTTGACCTTCATGTCAAACACCTGCTCCATCTCGG
CCTCCATCTTCTTCATCTTCTGCTCGTGCTCCCGCTTTTCCTCCTCCATC
TGGGTGAGTGGGTTCTTGTTGGACAGCCTGGCCTTGCCGTCCACCAATCC
CAGCTCGGATAGCTTCCGGCAGCGGTAGTTCTCGTAGTGGACGTTGTTCG
TCACGTCCTTGAGGTCCTGAAGGTGCGTGCGTATGACCATGTTGCGCAGC
GCTATAAAGTCGCAATGCGTCAGGTTCTCCACCTCCACCAGGCCCCAGGG
ATAACGCCTACCCCGGACCTTCTTTCCGTCCTGCTCGATGATGGTGTTGG
CACCCACCACCGCGAATGGCACTCGGCTGCGCAAATTCTGCGTGGTTTTG
GCCTCCTCGGCCGCATCCTCCAGCGTGGCGGGGAAGTCGTAGATCTTGAT
CTTGTGCTGGGCGATCTCGTTAAGGATCTGCTTCTTAAATAGATGCACCT
CGTCGGGCGTCATGGTGTCCGCCTTGGCGATCACCGGCACCAGATTTACC
TTGTCCGACAGGCTCTGCATGCAGGCAATGTCCAGCGGCAGGAGTCCGTG
TCCCGATGGCGCTATGAAGTAGAGGCAGCAGTGCACCCGGCTGTCCGAAA
TGGTTTTTCGGTACACCCGCGACT
BS08712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8705-PB | 1620 | pnut-RB | 713..1620 | 924..17 | 4540 | 100 | Minus |
| CG8705-PA | 1620 | pnut-RA | 713..1620 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 917..1824 | 924..17 | 4540 | 100 | Minus |
| pnut-RB | 3027 | CG8705-RB | 1499..2406 | 924..17 | 4540 | 100 | Minus |
| Sep4-RG | 2433 | CG9699-RG | 1084..1260 | 599..423 | 195 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238769..8239676 | 924..17 | 4540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:49:21 has no hits.
BS08712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:03 Download gff for
BS08712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-PA | 713..1620 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:09 Download gff for
BS08712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8705-PA | 713..1620 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:12 Download gff for
BS08712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 1499..2406 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:36 Download gff for
BS08712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 1499..2406 | 17..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:36 Download gff for
BS08712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238769..8239676 | 17..924 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:12 Download gff for
BS08712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4126274..4127181 | 17..924 | 100 | | Minus |
BS08712.5prime Sequence
874 bp (835 high quality bases) assembled on 2006-01-11
> BS08712.5prime
GAAGTTATCAGTCGACATGAATAGTCCTCGCTCGAACGCGGTTAATGGCG
GCAGCGGCGGCGCCATCTCCGCTCTGCCCAGCACTCTGGCCCAACTGGCT
CTGCGCGACAAGCAGCAGGCTGCGTCGGCATCGGCGTCCTCTGCCACGAA
CGGCAGCAGCGGCAGCGAGTCCTTGGTGGGCGTCGGTGGACGACCGCCCA
ATCAGCCGCCCAGTGTGCCAGTGGCCGCCAGTGGCAAGCTGGACACCAGC
GGCGGAGGCGCCTCCAACGGCGACTCGAACAAACTGACCCACGATCTGCA
GGAGAAGGAGCACCAGCAGGCGCAGAAGCCACAGAAGCCACCGCTCCCGG
TGCGCCAGAAGCCCATGGAGATCGCCGGCTATGTGGGCTTCGCCAACCTG
CCCAATCAGGTCTATCGCAAGGCCGTCAAGCGGGGATTCGAGTTCACTCT
GATGGTGGTGGGCGCCAGTGGGCTGGGCAAGTCGACGCTGATCAACTCCA
TGTTCCTGTCGGACATCTACAACGCGGAACAGTATCCGGGCCCCTCGCTG
CGCAAAAAGAAGACCGTGGCCGTGGAGGCCACCAAAGTAATGCTCAAGGA
GAACGGCGTCAATCTGACACTCACGGTGGTGGACACACCCGGATTCGGTG
ATGCCGTTGACAACAGCAACTGCTGGGTGCCCATACTGGAGTACGTGGAT
AGCAAGTACGAGGAGTACCTGACAGCCGAGTCGCGGGTGTACCGAANAAC
CATTTCGGACAGCCGGGTGCACTGCTGCCTCTACTTCATAGCGCCATCGG
GACACGGACTCCTGCCGCTGGACATTGCCTGCATGCAGAGCCTGTCGGAC
AAGGTAAATCTGGTGCCGGTGATC
BS08712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8705-PB | 1620 | pnut-RB | 1..858 | 17..874 | 4271 | 99.8 | Plus |
| CG8705-PA | 1620 | pnut-RA | 1..858 | 17..874 | 4271 | 99.8 | Plus |
| CG1403-PB | 498 | Sep1-RB | 38..74 | 375..411 | 160 | 97.2 | Plus |
| CG1403-PA | 1086 | Sep1-RA | 38..74 | 375..411 | 160 | 97.2 | Plus |
| CG1403-PB | 498 | Sep1-RB | 286..318 | 623..655 | 140 | 96.9 | Plus |
| CG1403-PA | 1086 | Sep1-RA | 286..318 | 623..655 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 205..1062 | 17..874 | 4279 | 99.9 | Plus |
| pnut-RB | 3027 | CG8705-RB | 787..1644 | 17..874 | 4279 | 99.9 | Plus |
| Sep1-RA | 2026 | CG1403-RA | 128..248 | 375..495 | 325 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238057..8238914 | 17..874 | 4279 | 99.9 | Plus |
| X | 23542271 | X | 21359531..21359651 | 375..495 | 320 | 84.3 | Plus |
| X | 23542271 | X | 21359819..21359916 | 597..694 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:51:55 has no hits.
BS08712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:04 Download gff for
BS08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:10 Download gff for
BS08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8705-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:01 Download gff for
BS08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 783..1644 | 12..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:20 Download gff for
BS08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 783..1644 | 12..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:20 Download gff for
BS08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238053..8238914 | 12..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:01 Download gff for
BS08712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4125558..4126419 | 12..874 | 99 | | Plus |
BS08712.complete Sequence
1652 bp (1652 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636244
> BS08712.complete
GAAGTTATCAGTCGACATGAATAGTCCTCGCTCGAACGCGGTTAATGGCG
GCAGCGGCGGCGCCATCTCCGCTCTGCCCAGCACTCTGGCCCAACTGGCT
CTGCGCGACAAGCAGCAGGCTGCGTCGGCATCGGCGTCCTCTGCCACGAA
CGGCAGCAGCGGCAGCGAGTCCTTGGTGGGCGTCGGTGGACGACCGCCCA
ATCAGCCGCCCAGTGTGCCAGTGGCCGCCAGTGGCAAGCTGGACACCAGC
GGCGGAGGCGCCTCCAACGGCGACTCGAACAAACTGACCCACGATCTGCA
GGAGAAGGAGCACCAGCAGGCGCAGAAGCCACAGAAGCCACCGCTCCCGG
TGCGCCAGAAGCCCATGGAGATCGCCGGCTATGTGGGCTTCGCCAACCTG
CCCAATCAGGTCTATCGCAAGGCCGTCAAGCGGGGATTCGAGTTCACTCT
GATGGTGGTGGGCGCCAGTGGGCTGGGCAAGTCGACGCTGATCAACTCCA
TGTTCCTGTCGGACATCTACAACGCGGAACAGTATCCGGGCCCCTCGCTG
CGCAAAAAGAAGACCGTGGCCGTGGAGGCCACCAAAGTAATGCTCAAGGA
GAACGGCGTCAATCTGACACTCACGGTGGTGGACACACCCGGATTCGGTG
ATGCCGTTGACAACAGCAACTGCTGGGTGCCCATACTGGAGTACGTGGAT
AGCAAGTACGAGGAGTACCTGACAGCCGAGTCGCGGGTGTACCGAAAAAC
CATTTCGGACAGCCGGGTGCACTGCTGCCTCTACTTCATAGCGCCATCGG
GACACGGACTCCTGCCGCTGGACATTGCCTGCATGCAGAGCCTGTCGGAC
AAGGTAAATCTGGTGCCGGTGATCGCCAAGGCGGACACCATGACGCCCGA
CGAGGTGCATCTATTTAAGAAGCAGATCCTTAACGAGATCGCCCAGCACA
AGATCAAGATCTACGACTTCCCCGCCACGCTGGAGGATGCGGCCGAGGAG
GCCAAAACCACGCAGAATTTGCGCAGCCGAGTGCCATTCGCGGTGGTGGG
TGCCAACACCATCATCGAGCAGGACGGAAAGAAGGTCCGGGGTAGGCGTT
ATCCCTGGGGCCTGGTGGAGGTGGAGAACCTGACGCATTGCGACTTTATA
GCGCTGCGCAACATGGTCATACGCACGCACCTTCAGGACCTCAAGGACGT
GACGAACAACGTCCACTACGAGAACTACCGCTGCCGGAAGCTATCCGAGC
TGGGATTGGTGGACGGCAAGGCCAGGCTGTCCAACAAGAACCCACTCACC
CAGATGGAGGAGGAAAAGCGGGAGCACGAGCAGAAGATGAAGAAGATGGA
GGCCGAGATGGAGCAGGTGTTTGACATGAAGGTCAAGGAGAAGATGCAGA
AGCTCAGGGACTCGGAGCTGGAGCTGGCGCGGCGCCACGAGGAGCGCAAG
AAGGCGCTGGAGCTGCAGATCCGGGAGCTGGAGGAGAAGAGACGCGAGTT
CGAGCGCGAGAAGAAGGAGTGGGAGGATGTCAACCACGTGACGCTCGAGG
AGCTCAAGCGACGCAGCCTGGGGGCCAACAGCAGCACGGACAATGTGGAT
GGCAAGAAGGAGAAGAAAAAGAAGGGTCTGTTCTAAAAGCTTTCTAGACC
AT
BS08712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 1620 | CG8705-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| pnut-RB | 1620 | CG8705-PB | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| Sep1-RA | 1086 | CG1403-PA | 38..158 | 375..495 | 320 | 84.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 205..1824 | 17..1636 | 8100 | 100 | Plus |
| pnut-RB | 3027 | CG8705-RB | 787..2406 | 17..1636 | 8100 | 100 | Plus |
| Sep1-RA | 2026 | CG1403-RA | 128..248 | 375..495 | 320 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238057..8239676 | 17..1636 | 8100 | 100 | Plus |
| X | 23542271 | X | 21359531..21359651 | 375..495 | 320 | 84.3 | Plus |
| X | 23542271 | X | 21359819..21359916 | 597..694 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:12:06 has no hits.
BS08712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:54 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 1..1620 | 17..1636 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:27 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 195..1818 | 12..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:36 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 787..2404 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:54 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 195..1818 | 12..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:26 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 787..2404 | 17..1634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:26 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238057..8239674 | 17..1634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:36 Download gff for
BS08712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4125562..4127179 | 17..1634 | 100 | | Plus |
BS08712.pep Sequence
Translation from 16 to 1635
> BS08712.pep
MNSPRSNAVNGGSGGAISALPSTLAQLALRDKQQAASASASSATNGSSGS
ESLVGVGGRPPNQPPSVPVAASGKLDTSGGGASNGDSNKLTHDLQEKEHQ
QAQKPQKPPLPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVVGA
SGLGKSTLINSMFLSDIYNAEQYPGPSLRKKKTVAVEATKVMLKENGVNL
TLTVVDTPGFGDAVDNSNCWVPILEYVDSKYEEYLTAESRVYRKTISDSR
VHCCLYFIAPSGHGLLPLDIACMQSLSDKVNLVPVIAKADTMTPDEVHLF
KKQILNEIAQHKIKIYDFPATLEDAAEEAKTTQNLRSRVPFAVVGANTII
EQDGKKVRGRRYPWGLVEVENLTHCDFIALRNMVIRTHLQDLKDVTNNVH
YENYRCRKLSELGLVDGKARLSNKNPLTQMEEEKREHEQKMKKMEAEMEQ
VFDMKVKEKMQKLRDSELELARRHEERKKALELQIRELEEKRREFEREKK
EWEDVNHVTLEELKRRSLGANSSTDNVDGKKEKKKKGLF*
BS08712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-PA | 539 | CG8705-PA | 1..539 | 1..539 | 2765 | 100 | Plus |
| pnut-PB | 539 | CG8705-PB | 1..539 | 1..539 | 2765 | 100 | Plus |
| Sep1-PA | 361 | CG1403-PA | 10..353 | 117..451 | 906 | 53 | Plus |
| Sep4-PC | 427 | CG9699-PC | 11..420 | 60..458 | 826 | 42.2 | Plus |
| Sep4-PE | 427 | CG9699-PE | 11..420 | 60..458 | 826 | 42.2 | Plus |
