Clone BS08714 Report

Search the DGRC for BS08714

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG6144-RB
Protein status:BS08714.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08714.3prime Sequence

717 bp (716 high quality bases) assembled on 2006-01-11

> BS08714.3prime
ATGGTCTAGAAAGCTTCTAGCAGAACTTGAGCTTCATCTTGCTGGTCTTG
GGCACATTACGGATGGTGAGGGAGATGCGCGGCGATCGGCGTACTAAGTG
ATCCCCGATCTTGTAGGTATTCTCGCACAGATCGTAGTTGGAGATGCGAT
CGCAGAGCACATCCTCGCTAGTCTCGGAGATGGCGTGCAGATAGTCGGTG
TACAGCGTGTCCTTGAGGATGAGCAGGCTGCGCGGTTCCAGCAGCAGCTT
GAAGAGCACTTCACGGGTCGTCTGATCTCCAGCTTCTGTTTCAGTTGTGG
TGTCCTCACGCTTGACAAACTCCAGCACGGTATGAGCACCCGTGGAAATG
GTGGAGATGATGGGATGGAACAGTGGTCCATCTGTGTGCGGCAGAATTCC
CTGACCCGGCAGATACTCGTTGACCAAAACATGGTTAGCGTTCTGCGACT
CGAACACCCCCAGATTGTTGACCTTGTCCACATAGGTCTGCAGCCACTCC
GGAATCTCCTCGGCAATCATTCCGTTGGGATGCGGCACACCGCCGTAGTT
GACCAGCCGGCGGTTCAGCAGCTGCGTCCATCGAGGCTTCGGAGTGCGCT
CGATGTGGCTCAGGATGCGCTGCTCCTCCTCGGAAGTGATGAAGTTCGGA
ATGTACATGACAGTCGGTGGGCACTTTCGCACTTCAAAGCCCGTGAAATC
CATGTCGACTGATAACT

BS08714.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-PA 687 CG6144-RA 1..687 703..17 3435 100 Minus
CG6144-PB 687 CG6144-RB 1..687 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-RC 1553 CG6144-RC 113..800 704..17 3440 100 Minus
CG6144-RB 1705 CG6144-RB 265..952 704..17 3440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10489050..10489708 675..17 3295 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:58:51 has no hits.

BS08714.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:07 Download gff for BS08714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-PB 1..687 17..703 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:14 Download gff for BS08714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-PB 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:46:16 Download gff for BS08714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 265..955 11..704 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:18 Download gff for BS08714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 265..955 11..704 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:18 Download gff for BS08714.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10488958..10488988 674..704 100 -> Minus
2L 10489052..10489711 11..673 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:46:16 Download gff for BS08714.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10488958..10488988 674..704 100 -> Minus
arm_2L 10489052..10489711 11..673 99   Minus

BS08714.5prime Sequence

717 bp (716 high quality bases) assembled on 2006-01-11

> BS08714.5prime
GAAGTTATCAGTCGACATGGATTTCACGGGCTTTGAAGTGCGAAAGTGCC
CACCGACTGTCATGTACATTCCGAACTTCATCACTTCCGAGGAGGAGCAG
CGCATCCTGAGCCACATCGAGCGCACTCCGAAGCCTCGATGGACGCAGCT
GCTGAACCGCCGGCTGGTCAACTACGGCGGTGTGCCGCATCCCAACGGAA
TGATTGCCGAGGAGATTCCGGAGTGGCTGCAGACCTATGTGGACAAGGTC
AACAATCTGGGGGTGTTCGAGTCGCAGAACGCTAACCATGTTTTGGTCAA
CGAGTATCTGCCGGGTCAGGGAATTCTGCCGCACACAGATGGACCACTGT
TCCATCCCATCATCTCCACCATTTCCACGGGTGCTCATACCGTGCTGGAG
TTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGAC
GACCCGTGAAGTGCTCTTCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCA
TCCTCAAGGACACGCTGTACACCGACTATCTGCACGCCATCTCCGAGACT
AGCGAGGATGTGCTCTGCGATCGCATCTCCAACTACGATCTGTGCGAGAA
TACCTACAAGATCGGGGATCACTTAGTACGCCGATCGCCGCGCATCTCCC
TCACCATCCGTAATGTGCCCAAGACCAGCAAGATGAAGCTCAAGTTCTGC
TAGAAGCTTTCTAGACC

BS08714.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-PA 687 CG6144-RA 1..687 17..703 3435 100 Plus
CG6144-PB 687 CG6144-RB 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-RC 1553 CG6144-RC 113..800 16..703 3440 100 Plus
CG6144-RB 1705 CG6144-RB 265..952 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10489050..10489708 45..703 3295 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:14:08 has no hits.

BS08714.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:08 Download gff for BS08714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-PB 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:15 Download gff for BS08714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-PB 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:38 Download gff for BS08714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 265..955 16..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:10 Download gff for BS08714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 265..955 16..709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:10 Download gff for BS08714.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10488958..10488988 16..46 100 -> Plus
2L 10489052..10489711 47..709 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:38 Download gff for BS08714.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10488958..10488988 16..46 100 -> Plus
arm_2L 10489052..10489711 47..709 99   Plus

BS08714.complete Sequence

719 bp (719 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ638816

> BS08714.complete
GAAGTTATCAGTCGACATGGATTTCACGGGCTTTGAAGTGCGAAAGTGCC
CACCGACTGTCATGTACATTCCGAACTTCATCACTTCCGAGGAGGAGCAG
CGCATCCTGAGCCACATCGAGCGCACTCCGAAGCCTCGATGGACGCAGCT
GCTGAACCGCCGGCTGGTCAACTACGGCGGTGTGCCGCATCCCAACGGAA
TGATTGCCGAGGAGATTCCGGAGTGGCTGCAGACCTATGTGGACAAGGTC
AACAATCTGGGGGTGTTCGAGTCGCAGAACGCTAACCATGTTTTGGTCAA
CGAGTATCTGCCGGGTCAGGGAATTCTGCCGCACACAGATGGACCACTGT
TCCATCCCATCATCTCCACCATTTCCACGGGTGCTCATACCGTGCTGGAG
TTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGAC
GACCCGTGAAGTGCTCTTCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCA
TCCTCAAGGACACGCTGTACACCGACTATCTGCACGCCATCTCCGAGACT
AGCGAGGATGTGCTCTGCGATCGCATCTCCAACTACGATCTGTGCGAGAA
TACCTACAAGATCGGGGATCACTTAGTACGCCGATCGCCGCGCATCTCCC
TCACCATCCGTAATGTGCCCAAGACCAGCAAGATGAAGCTCAAGTTCTGC
TAGAAGCTTTCTAGACCAT

BS08714.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-RC 687 CG6144-PC 1..687 17..703 3435 100 Plus
CG6144-RB 687 CG6144-PB 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-RC 1553 CG6144-RC 113..800 16..703 3440 100 Plus
CG6144-RB 1705 CG6144-RB 265..952 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10489050..10489708 45..703 3295 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:46:31 has no hits.

BS08714.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:43 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:58 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 214..904 16..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:51 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 266..952 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:43 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 214..904 16..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:32 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 266..952 17..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:32 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10488959..10488988 17..46 100 -> Plus
2L 10489052..10489708 47..703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:51 Download gff for BS08714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10488959..10488988 17..46 100 -> Plus
arm_2L 10489052..10489708 47..703 100   Plus

BS08714.pep Sequence

Translation from 16 to 702

> BS08714.pep
MDFTGFEVRKCPPTVMYIPNFITSEEEQRILSHIERTPKPRWTQLLNRRL
VNYGGVPHPNGMIAEEIPEWLQTYVDKVNNLGVFESQNANHVLVNEYLPG
QGILPHTDGPLFHPIISTISTGAHTVLEFVKREDTTTETEAGDQTTREVL
FKLLLEPRSLLILKDTLYTDYLHAISETSEDVLCDRISNYDLCENTYKIG
DHLVRRSPRISLTIRNVPKTSKMKLKFC*

BS08714.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-PC 228 CG6144-PC 1..228 1..228 1207 100 Plus
CG6144-PB 228 CG6144-PB 1..228 1..228 1207 100 Plus