Clone Sequence Records
BS08714.3prime Sequence
717 bp (716 high quality bases) assembled on 2006-01-11
> BS08714.3prime
ATGGTCTAGAAAGCTTCTAGCAGAACTTGAGCTTCATCTTGCTGGTCTTG
GGCACATTACGGATGGTGAGGGAGATGCGCGGCGATCGGCGTACTAAGTG
ATCCCCGATCTTGTAGGTATTCTCGCACAGATCGTAGTTGGAGATGCGAT
CGCAGAGCACATCCTCGCTAGTCTCGGAGATGGCGTGCAGATAGTCGGTG
TACAGCGTGTCCTTGAGGATGAGCAGGCTGCGCGGTTCCAGCAGCAGCTT
GAAGAGCACTTCACGGGTCGTCTGATCTCCAGCTTCTGTTTCAGTTGTGG
TGTCCTCACGCTTGACAAACTCCAGCACGGTATGAGCACCCGTGGAAATG
GTGGAGATGATGGGATGGAACAGTGGTCCATCTGTGTGCGGCAGAATTCC
CTGACCCGGCAGATACTCGTTGACCAAAACATGGTTAGCGTTCTGCGACT
CGAACACCCCCAGATTGTTGACCTTGTCCACATAGGTCTGCAGCCACTCC
GGAATCTCCTCGGCAATCATTCCGTTGGGATGCGGCACACCGCCGTAGTT
GACCAGCCGGCGGTTCAGCAGCTGCGTCCATCGAGGCTTCGGAGTGCGCT
CGATGTGGCTCAGGATGCGCTGCTCCTCCTCGGAAGTGATGAAGTTCGGA
ATGTACATGACAGTCGGTGGGCACTTTCGCACTTCAAAGCCCGTGAAATC
CATGTCGACTGATAACT
BS08714.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-PA | 687 | CG6144-RA | 1..687 | 703..17 | 3435 | 100 | Minus |
CG6144-PB | 687 | CG6144-RB | 1..687 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 1553 | CG6144-RC | 113..800 | 704..17 | 3440 | 100 | Minus |
CG6144-RB | 1705 | CG6144-RB | 265..952 | 704..17 | 3440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10489050..10489708 | 675..17 | 3295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:58:51 has no hits.
BS08714.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:07 Download gff for
BS08714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:14 Download gff for
BS08714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:46:16 Download gff for
BS08714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 11..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:18 Download gff for
BS08714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 11..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:18 Download gff for
BS08714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10488958..10488988 | 674..704 | 100 | -> | Minus |
2L | 10489052..10489711 | 11..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:46:16 Download gff for
BS08714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10488958..10488988 | 674..704 | 100 | -> | Minus |
arm_2L | 10489052..10489711 | 11..673 | 99 | | Minus |
BS08714.5prime Sequence
717 bp (716 high quality bases) assembled on 2006-01-11
> BS08714.5prime
GAAGTTATCAGTCGACATGGATTTCACGGGCTTTGAAGTGCGAAAGTGCC
CACCGACTGTCATGTACATTCCGAACTTCATCACTTCCGAGGAGGAGCAG
CGCATCCTGAGCCACATCGAGCGCACTCCGAAGCCTCGATGGACGCAGCT
GCTGAACCGCCGGCTGGTCAACTACGGCGGTGTGCCGCATCCCAACGGAA
TGATTGCCGAGGAGATTCCGGAGTGGCTGCAGACCTATGTGGACAAGGTC
AACAATCTGGGGGTGTTCGAGTCGCAGAACGCTAACCATGTTTTGGTCAA
CGAGTATCTGCCGGGTCAGGGAATTCTGCCGCACACAGATGGACCACTGT
TCCATCCCATCATCTCCACCATTTCCACGGGTGCTCATACCGTGCTGGAG
TTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGAC
GACCCGTGAAGTGCTCTTCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCA
TCCTCAAGGACACGCTGTACACCGACTATCTGCACGCCATCTCCGAGACT
AGCGAGGATGTGCTCTGCGATCGCATCTCCAACTACGATCTGTGCGAGAA
TACCTACAAGATCGGGGATCACTTAGTACGCCGATCGCCGCGCATCTCCC
TCACCATCCGTAATGTGCCCAAGACCAGCAAGATGAAGCTCAAGTTCTGC
TAGAAGCTTTCTAGACC
BS08714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-PA | 687 | CG6144-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG6144-PB | 687 | CG6144-RB | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 1553 | CG6144-RC | 113..800 | 16..703 | 3440 | 100 | Plus |
CG6144-RB | 1705 | CG6144-RB | 265..952 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10489050..10489708 | 45..703 | 3295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:14:08 has no hits.
BS08714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:08 Download gff for
BS08714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:15 Download gff for
BS08714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:38 Download gff for
BS08714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 16..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:10 Download gff for
BS08714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 16..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:10 Download gff for
BS08714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10488958..10488988 | 16..46 | 100 | -> | Plus |
2L | 10489052..10489711 | 47..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:38 Download gff for
BS08714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10488958..10488988 | 16..46 | 100 | -> | Plus |
arm_2L | 10489052..10489711 | 47..709 | 99 | | Plus |
BS08714.complete Sequence
719 bp (719 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ638816
> BS08714.complete
GAAGTTATCAGTCGACATGGATTTCACGGGCTTTGAAGTGCGAAAGTGCC
CACCGACTGTCATGTACATTCCGAACTTCATCACTTCCGAGGAGGAGCAG
CGCATCCTGAGCCACATCGAGCGCACTCCGAAGCCTCGATGGACGCAGCT
GCTGAACCGCCGGCTGGTCAACTACGGCGGTGTGCCGCATCCCAACGGAA
TGATTGCCGAGGAGATTCCGGAGTGGCTGCAGACCTATGTGGACAAGGTC
AACAATCTGGGGGTGTTCGAGTCGCAGAACGCTAACCATGTTTTGGTCAA
CGAGTATCTGCCGGGTCAGGGAATTCTGCCGCACACAGATGGACCACTGT
TCCATCCCATCATCTCCACCATTTCCACGGGTGCTCATACCGTGCTGGAG
TTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGAC
GACCCGTGAAGTGCTCTTCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCA
TCCTCAAGGACACGCTGTACACCGACTATCTGCACGCCATCTCCGAGACT
AGCGAGGATGTGCTCTGCGATCGCATCTCCAACTACGATCTGTGCGAGAA
TACCTACAAGATCGGGGATCACTTAGTACGCCGATCGCCGCGCATCTCCC
TCACCATCCGTAATGTGCCCAAGACCAGCAAGATGAAGCTCAAGTTCTGC
TAGAAGCTTTCTAGACCAT
BS08714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 687 | CG6144-PC | 1..687 | 17..703 | 3435 | 100 | Plus |
CG6144-RB | 687 | CG6144-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 1553 | CG6144-RC | 113..800 | 16..703 | 3440 | 100 | Plus |
CG6144-RB | 1705 | CG6144-RB | 265..952 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10489050..10489708 | 45..703 | 3295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:46:31 has no hits.
BS08714.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:43 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:58 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 214..904 | 16..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:51 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 266..952 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:43 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 214..904 | 16..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:32 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 266..952 | 17..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:32 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10488959..10488988 | 17..46 | 100 | -> | Plus |
2L | 10489052..10489708 | 47..703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:51 Download gff for
BS08714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10488959..10488988 | 17..46 | 100 | -> | Plus |
arm_2L | 10489052..10489708 | 47..703 | 100 | | Plus |
BS08714.pep Sequence
Translation from 16 to 702
> BS08714.pep
MDFTGFEVRKCPPTVMYIPNFITSEEEQRILSHIERTPKPRWTQLLNRRL
VNYGGVPHPNGMIAEEIPEWLQTYVDKVNNLGVFESQNANHVLVNEYLPG
QGILPHTDGPLFHPIISTISTGAHTVLEFVKREDTTTETEAGDQTTREVL
FKLLLEPRSLLILKDTLYTDYLHAISETSEDVLCDRISNYDLCENTYKIG
DHLVRRSPRISLTIRNVPKTSKMKLKFC*
BS08714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-PC | 228 | CG6144-PC | 1..228 | 1..228 | 1207 | 100 | Plus |
CG6144-PB | 228 | CG6144-PB | 1..228 | 1..228 | 1207 | 100 | Plus |